Wall clock time and date at job start Wed Apr 1 2020 01:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.99234 * 2 1 4 4 O 1.43745 * 109.87911 * 121.08472 * 2 1 3 5 5 C 1.44382 * 106.97556 * 145.93925 * 4 2 1 6 6 C 1.54995 * 103.48687 * 319.93983 * 5 4 2 7 7 C 1.54101 * 109.87886 * 238.91864 * 2 1 3 8 8 H 1.09006 * 110.48910 * 119.87447 * 7 2 1 9 9 C 1.50691 * 110.48876 * 357.22129 * 7 2 1 10 10 O 1.21286 * 119.99959 * 275.58520 * 9 7 2 11 11 N 1.34779 * 120.00223 * 95.58609 * 9 7 2 12 12 C 1.46498 * 119.99844 * 0.02562 * 11 9 7 13 13 C 1.46497 * 120.00209 * 179.97438 * 11 9 7 14 14 C 1.53009 * 109.46848 * 90.00261 * 13 11 9 15 15 C 1.52996 * 109.46946 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.46951 * 180.02562 * 15 14 13 17 17 C 1.46900 * 111.00231 * 66.04246 * 16 15 14 18 18 C 1.46903 * 110.99939 * 189.99811 * 16 15 14 19 19 C 1.50702 * 109.47115 * 170.00178 * 18 16 15 20 20 O 1.21288 * 120.00201 * 359.97438 * 19 18 16 21 21 N 1.34771 * 120.00119 * 179.97438 * 19 18 16 22 22 C 1.37096 * 120.00345 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99783 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00318 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00046 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00228 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47078 * 89.99921 * 26 24 22 28 28 H 1.48499 * 109.47285 * 210.00186 * 26 24 22 29 29 H 1.48504 * 109.46791 * 330.00077 * 26 24 22 30 30 H 1.08994 * 109.46868 * 183.64141 * 1 2 3 31 31 H 1.08992 * 109.47449 * 303.64407 * 1 2 3 32 32 H 1.09002 * 109.47076 * 63.64379 * 1 2 3 33 33 H 1.08998 * 110.61500 * 201.43939 * 5 4 2 34 34 H 1.08999 * 110.61617 * 78.44213 * 5 4 2 35 35 H 1.09005 * 110.90293 * 155.22093 * 6 5 4 36 36 H 1.08995 * 110.90790 * 278.81921 * 6 5 4 37 37 H 1.09003 * 109.47438 * 89.99465 * 12 11 9 38 38 H 1.08997 * 109.46987 * 210.00280 * 12 11 9 39 39 H 1.09004 * 109.47240 * 329.99693 * 12 11 9 40 40 H 1.08992 * 109.47355 * 210.00227 * 13 11 9 41 41 H 1.09001 * 109.47368 * 330.00533 * 13 11 9 42 42 H 1.09005 * 109.46908 * 299.99838 * 14 13 11 43 43 H 1.09001 * 109.46914 * 59.99994 * 14 13 11 44 44 H 1.09005 * 109.46879 * 299.99482 * 15 14 13 45 45 H 1.08994 * 109.47444 * 59.99667 * 15 14 13 46 46 H 1.09000 * 109.46994 * 59.99977 * 17 16 15 47 47 H 1.09001 * 109.47623 * 179.97438 * 17 16 15 48 48 H 1.08997 * 109.46953 * 300.00037 * 17 16 15 49 49 H 1.09008 * 109.46928 * 289.99447 * 18 16 15 50 50 H 1.08990 * 109.47530 * 49.99884 * 18 16 15 51 51 H 0.97006 * 119.99885 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00548 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2380 -1.3641 0.7647 6 6 2.9195 -1.8914 -0.6576 7 6 2.0540 -0.7481 -1.2411 8 1 2.6620 -0.0858 -1.8574 9 6 0.9074 -1.3103 -2.0412 10 8 0.4275 -2.3832 -1.7418 11 7 0.4152 -0.6210 -3.0896 12 6 0.9953 0.6746 -3.4516 13 6 -0.6991 -1.1678 -3.8677 14 6 -2.0231 -0.6956 -3.2635 15 6 -3.1869 -1.2672 -4.0758 16 7 -4.4581 -0.8134 -3.4961 17 6 -4.6127 0.6404 -3.6391 18 6 -5.5943 -1.5253 -4.0964 19 6 -6.8472 -1.2196 -3.3168 20 8 -6.7984 -0.4816 -2.3554 21 7 -8.0219 -1.7660 -3.6878 22 6 -9.1617 -1.4883 -2.9783 23 1 -9.1182 -0.8312 -2.1222 24 6 -10.3729 -2.0513 -3.3611 25 7 -10.4260 -2.8504 -4.4029 26 14 -11.9260 -1.6723 -2.3947 27 1 -12.5861 -0.4725 -2.9692 28 1 -12.8518 -2.8309 -2.4712 29 1 -11.5748 -1.4122 -0.9755 30 1 -0.3633 -1.0256 0.0653 31 1 -0.3634 0.5693 0.8554 32 1 -0.3633 0.4562 -0.9209 33 1 3.4584 -2.1907 1.4401 34 1 4.0685 -0.6588 0.7357 35 1 3.8332 -2.0223 -1.2374 36 1 2.3541 -2.8219 -0.6099 37 1 1.8055 0.5234 -4.1649 38 1 0.2273 1.3034 -3.9020 39 1 1.3847 1.1611 -2.5573 40 1 -0.6264 -0.8220 -4.8988 41 1 -0.6576 -2.2568 -3.8460 42 1 -2.0958 -1.0415 -2.2324 43 1 -2.0646 0.3934 -3.2853 44 1 -3.1144 -0.9217 -5.1071 45 1 -3.1452 -2.3561 -4.0537 46 1 -4.5964 0.9052 -4.6964 47 1 -5.5622 0.9496 -3.2021 48 1 -3.7945 1.1451 -3.1255 49 1 -5.7211 -1.2015 -5.1295 50 1 -5.4044 -2.5983 -4.0726 51 1 -8.0611 -2.3559 -4.4569 52 1 -11.2716 -3.2432 -4.6704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570214304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:53 Heat of formation + Delta-G solvation = -105.667687 kcal Electronic energy + Delta-G solvation = -30427.030515 eV Core-core repulsion = 26234.060251 eV Total energy + Delta-G solvation = -4192.970264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13343 -38.97756 -38.55816 -36.86451 -35.84181 -33.87163 -33.17915 -31.83079 -31.76133 -31.18526 -28.02125 -27.36889 -27.03916 -25.94173 -24.78989 -23.37134 -22.56124 -21.71825 -20.70291 -19.14463 -19.01153 -17.80385 -17.78926 -16.92805 -16.51622 -16.12391 -15.87375 -15.66174 -15.49738 -15.16391 -14.81136 -14.58978 -14.29185 -13.95100 -13.82160 -13.57223 -13.36690 -13.27538 -13.11087 -12.81594 -12.61002 -12.56653 -12.41685 -12.17831 -11.96798 -11.89424 -11.60045 -11.55799 -11.44116 -11.34749 -11.24104 -11.21092 -11.16913 -10.88850 -10.54487 -10.36275 -10.24990 -10.18362 -9.84805 -9.44213 -8.99190 -8.39693 -7.93690 -7.79362 -6.38197 -3.78768 2.27996 2.61437 3.20214 3.28619 3.35003 3.45062 3.94408 3.95543 4.04843 4.11041 4.28610 4.38169 4.56111 4.67671 4.70034 4.80333 4.83824 4.90667 4.99580 5.07828 5.11275 5.15236 5.20526 5.22518 5.25859 5.28747 5.34258 5.36775 5.49191 5.51016 5.63723 5.68943 5.72624 5.76020 5.76701 5.97131 6.00943 6.03882 6.08293 6.13823 6.31649 6.35160 6.52509 6.59590 7.01882 7.33258 7.46109 7.58675 7.88267 8.10437 8.66072 9.22000 9.58675 10.10911 10.79654 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.001869 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.059230 B =14978.566786 C =15563.594956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.076 0.924 4 O -0.367 6.367 5 C 0.048 3.952 6 C -0.144 4.144 7 C -0.147 4.147 8 H 0.102 0.898 9 C 0.530 3.470 10 O -0.525 6.525 11 N -0.617 5.617 12 C 0.074 3.926 13 C 0.116 3.884 14 C -0.130 4.130 15 C 0.059 3.941 16 N -0.518 5.518 17 C 0.023 3.977 18 C 0.046 3.954 19 C 0.445 3.555 20 O -0.577 6.577 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.012 0.988 47 H 0.094 0.906 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.859 6.016 -0.968 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.094 0.906 4 O -0.286 6.286 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.169 4.169 8 H 0.120 0.880 9 C 0.317 3.683 10 O -0.401 6.401 11 N -0.351 5.351 12 C -0.069 4.069 13 C -0.007 4.007 14 C -0.169 4.169 15 C -0.070 4.070 16 N -0.242 5.242 17 C -0.125 4.125 18 C -0.085 4.085 19 C 0.230 3.770 20 O -0.461 6.461 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.030 0.970 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.106 0.894 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 29.361 5.724 0.462 29.917 hybrid contribution -0.712 0.114 -1.347 1.528 sum 28.648 5.837 -0.886 29.250 Atomic orbital electron populations 1.22161 0.92915 1.04471 1.02884 1.22572 0.95874 0.94881 0.83192 0.90623 1.88947 1.39635 1.67608 1.32422 1.23551 0.87617 0.96493 0.95188 1.23185 0.99693 0.99129 0.96133 1.22888 0.96578 0.99434 0.97980 0.87966 1.20127 0.83719 0.84625 0.79799 1.90732 1.60287 1.21717 1.67341 1.47870 1.34948 1.21090 1.31178 1.21856 0.99233 0.84638 1.01162 1.21488 0.84872 1.00275 0.94017 1.21928 0.92533 1.00880 1.01512 1.22027 0.89388 1.00355 0.95236 1.61519 1.00257 1.05489 1.56942 1.22549 1.04414 0.87433 0.98134 1.21863 0.91224 0.99437 0.96004 1.19753 0.84231 0.85470 0.87534 1.90480 1.85690 1.40108 1.29830 1.41870 1.06343 1.43102 1.28921 1.19694 0.84624 1.27163 1.11207 0.87940 1.25257 0.99449 0.96466 0.96869 1.69610 1.27462 1.31602 1.25748 0.85860 0.80756 0.77744 0.79943 1.20482 1.20950 1.19408 0.90518 0.91273 0.90954 0.88541 0.92041 0.89868 0.88414 0.92401 0.90513 0.91027 0.90599 0.89625 0.90385 0.91779 0.95278 0.90760 0.96968 0.88714 0.92239 0.93569 0.89410 0.77512 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.41 37.16 0.31 -1.45 16 2 C 0.09 0.82 3.94 -26.16 -0.10 0.71 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 O -0.37 -3.91 11.19 -35.23 -0.39 -4.30 16 5 C 0.05 0.35 7.72 38.21 0.29 0.64 16 6 C -0.14 -1.08 6.65 -24.72 -0.16 -1.24 16 7 C -0.15 -1.13 2.51 -90.25 -0.23 -1.36 16 8 H 0.10 0.49 6.54 -51.93 -0.34 0.15 16 9 C 0.53 5.52 4.61 -10.99 -0.05 5.47 16 10 O -0.53 -7.67 14.54 5.55 0.08 -7.59 16 11 N -0.62 -5.19 2.46 -181.57 -0.45 -5.63 16 12 C 0.07 0.35 9.79 59.85 0.59 0.94 16 13 C 0.12 1.07 5.41 -4.04 -0.02 1.05 16 14 C -0.13 -1.48 5.46 -26.73 -0.15 -1.63 16 15 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 16 N -0.52 -8.93 4.50 -244.37 -1.10 -10.03 16 17 C 0.02 0.37 8.96 60.06 0.54 0.91 16 18 C 0.05 0.85 5.45 -4.97 -0.03 0.83 16 19 C 0.44 10.76 7.47 -10.99 -0.08 10.68 16 20 O -0.58 -15.86 13.91 5.55 0.08 -15.78 16 21 N -0.57 -14.62 5.29 -10.96 -0.06 -14.68 16 22 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 23 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 26 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 30 H 0.08 1.03 7.00 -51.93 -0.36 0.67 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.71 7.07 -51.93 -0.37 0.34 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.98 6.93 -51.93 -0.36 0.62 16 37 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 39 H 0.07 0.26 6.38 -51.93 -0.33 -0.07 16 40 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.09 0.92 7.42 -51.93 -0.39 0.54 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.69 6.55 -51.93 -0.34 0.35 16 44 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 45 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 46 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 47 H 0.09 1.91 5.83 -51.93 -0.30 1.61 16 48 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 49 H 0.05 0.78 8.12 -51.92 -0.42 0.36 16 50 H 0.09 1.49 7.93 -51.93 -0.41 1.08 16 51 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 52 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 409.27 15.07 6.17 6.17 Total: -1.00 -34.92 409.27 -8.17 -43.09 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.85 Total: 8.36 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 0.65 Total: 8.20 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.88 Total: -54.50 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.24 Total: -27.67 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.92 -8.17 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570214304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.575 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds