Wall clock time and date at job start Wed Apr 1 2020 01:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.99234 * 2 1 4 4 O 1.43745 * 109.87911 * 121.08472 * 2 1 3 5 5 C 1.44382 * 106.97556 * 145.93925 * 4 2 1 6 6 C 1.54995 * 103.48687 * 319.93983 * 5 4 2 7 7 C 1.54101 * 109.87886 * 238.91864 * 2 1 3 8 8 H 1.09006 * 110.48910 * 119.87447 * 7 2 1 9 9 C 1.50691 * 110.48876 * 357.22129 * 7 2 1 10 10 O 1.21286 * 119.99959 * 275.58520 * 9 7 2 11 11 N 1.34779 * 120.00223 * 95.58609 * 9 7 2 12 12 C 1.46498 * 119.99844 * 0.02562 * 11 9 7 13 13 C 1.46497 * 120.00209 * 179.97438 * 11 9 7 14 14 C 1.53009 * 109.46848 * 90.00261 * 13 11 9 15 15 C 1.52996 * 109.46946 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.46951 * 180.02562 * 15 14 13 17 17 C 1.46900 * 111.00231 * 66.04246 * 16 15 14 18 18 C 1.46903 * 110.99939 * 189.99811 * 16 15 14 19 19 C 1.50702 * 109.47115 * 170.00178 * 18 16 15 20 20 O 1.21288 * 120.00201 * 359.97438 * 19 18 16 21 21 N 1.34771 * 120.00119 * 179.97438 * 19 18 16 22 22 C 1.37096 * 120.00345 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99783 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00318 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00046 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00228 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47078 * 89.99921 * 26 24 22 28 28 H 1.48499 * 109.47285 * 210.00186 * 26 24 22 29 29 H 1.48504 * 109.46791 * 330.00077 * 26 24 22 30 30 H 1.08994 * 109.46868 * 183.64141 * 1 2 3 31 31 H 1.08992 * 109.47449 * 303.64407 * 1 2 3 32 32 H 1.09002 * 109.47076 * 63.64379 * 1 2 3 33 33 H 1.08998 * 110.61500 * 201.43939 * 5 4 2 34 34 H 1.08999 * 110.61617 * 78.44213 * 5 4 2 35 35 H 1.09005 * 110.90293 * 155.22093 * 6 5 4 36 36 H 1.08995 * 110.90790 * 278.81921 * 6 5 4 37 37 H 1.09003 * 109.47438 * 89.99465 * 12 11 9 38 38 H 1.08997 * 109.46987 * 210.00280 * 12 11 9 39 39 H 1.09004 * 109.47240 * 329.99693 * 12 11 9 40 40 H 1.08992 * 109.47355 * 210.00227 * 13 11 9 41 41 H 1.09001 * 109.47368 * 330.00533 * 13 11 9 42 42 H 1.09005 * 109.46908 * 299.99838 * 14 13 11 43 43 H 1.09001 * 109.46914 * 59.99994 * 14 13 11 44 44 H 1.09005 * 109.46879 * 299.99482 * 15 14 13 45 45 H 1.08994 * 109.47444 * 59.99667 * 15 14 13 46 46 H 1.09000 * 109.46994 * 59.99977 * 17 16 15 47 47 H 1.09001 * 109.47623 * 179.97438 * 17 16 15 48 48 H 1.08997 * 109.46953 * 300.00037 * 17 16 15 49 49 H 1.09008 * 109.46928 * 289.99447 * 18 16 15 50 50 H 1.08990 * 109.47530 * 49.99884 * 18 16 15 51 51 H 0.97006 * 119.99885 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00548 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2380 -1.3641 0.7647 6 6 2.9195 -1.8914 -0.6576 7 6 2.0540 -0.7481 -1.2411 8 1 2.6620 -0.0858 -1.8574 9 6 0.9074 -1.3103 -2.0412 10 8 0.4275 -2.3832 -1.7418 11 7 0.4152 -0.6210 -3.0896 12 6 0.9953 0.6746 -3.4516 13 6 -0.6991 -1.1678 -3.8677 14 6 -2.0231 -0.6956 -3.2635 15 6 -3.1869 -1.2672 -4.0758 16 7 -4.4581 -0.8134 -3.4961 17 6 -4.6127 0.6404 -3.6391 18 6 -5.5943 -1.5253 -4.0964 19 6 -6.8472 -1.2196 -3.3168 20 8 -6.7984 -0.4816 -2.3554 21 7 -8.0219 -1.7660 -3.6878 22 6 -9.1617 -1.4883 -2.9783 23 1 -9.1182 -0.8312 -2.1222 24 6 -10.3729 -2.0513 -3.3611 25 7 -10.4260 -2.8504 -4.4029 26 14 -11.9260 -1.6723 -2.3947 27 1 -12.5861 -0.4725 -2.9692 28 1 -12.8518 -2.8309 -2.4712 29 1 -11.5748 -1.4122 -0.9755 30 1 -0.3633 -1.0256 0.0653 31 1 -0.3634 0.5693 0.8554 32 1 -0.3633 0.4562 -0.9209 33 1 3.4584 -2.1907 1.4401 34 1 4.0685 -0.6588 0.7357 35 1 3.8332 -2.0223 -1.2374 36 1 2.3541 -2.8219 -0.6099 37 1 1.8055 0.5234 -4.1649 38 1 0.2273 1.3034 -3.9020 39 1 1.3847 1.1611 -2.5573 40 1 -0.6264 -0.8220 -4.8988 41 1 -0.6576 -2.2568 -3.8460 42 1 -2.0958 -1.0415 -2.2324 43 1 -2.0646 0.3934 -3.2853 44 1 -3.1144 -0.9217 -5.1071 45 1 -3.1452 -2.3561 -4.0537 46 1 -4.5964 0.9052 -4.6964 47 1 -5.5622 0.9496 -3.2021 48 1 -3.7945 1.1451 -3.1255 49 1 -5.7211 -1.2015 -5.1295 50 1 -5.4044 -2.5983 -4.0726 51 1 -8.0611 -2.3559 -4.4569 52 1 -11.2716 -3.2432 -4.6704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570214304.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:52 Heat of formation + Delta-G solvation = -131.979296 kcal Electronic energy + Delta-G solvation = -30428.171472 eV Core-core repulsion = 26234.060251 eV Total energy + Delta-G solvation = -4194.111221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83349 -40.40427 -39.61213 -38.21455 -36.75609 -35.88573 -33.99176 -33.29435 -32.65341 -32.48447 -29.46583 -28.23128 -27.67841 -27.05713 -26.35252 -24.55132 -23.17415 -22.59383 -21.74117 -20.98742 -19.87265 -19.71892 -18.45912 -17.85490 -17.57235 -17.15319 -16.75293 -16.71231 -16.59897 -16.42484 -16.10174 -15.87687 -15.76649 -15.25202 -15.04469 -14.75326 -14.49358 -14.30446 -13.78718 -13.75109 -13.51010 -13.43811 -13.35384 -13.29060 -13.12269 -12.99768 -12.86655 -12.81594 -12.66908 -12.51185 -12.40206 -12.31803 -12.23118 -12.12874 -12.00752 -11.83154 -11.52685 -11.46064 -10.96240 -10.56813 -10.29346 -10.00642 -9.66684 -9.17239 -8.46963 -5.95624 1.36941 1.40363 1.52891 1.53643 1.97343 2.04902 2.28212 2.80130 2.84630 3.19601 3.34125 3.42649 3.52351 3.77177 3.93511 4.02705 4.10720 4.16007 4.18288 4.23795 4.29649 4.34188 4.37759 4.40321 4.44869 4.51030 4.53546 4.55331 4.59543 4.62670 4.70430 4.71254 4.81078 4.82496 4.88313 4.91433 4.97393 5.10068 5.12380 5.15863 5.18526 5.30694 5.40574 5.57475 5.89136 5.91532 6.08470 6.25328 6.37157 6.60629 7.12690 7.16401 7.56069 8.12392 8.70487 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.001869 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.059230 B =14978.566786 C =15563.594956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 H 0.109 0.891 4 O -0.401 6.401 5 C 0.045 3.955 6 C -0.144 4.144 7 C -0.141 4.141 8 H 0.143 0.857 9 C 0.522 3.478 10 O -0.580 6.580 11 N -0.614 5.614 12 C 0.064 3.936 13 C 0.121 3.879 14 C -0.117 4.117 15 C 0.061 3.939 16 N -0.545 5.545 17 C 0.030 3.970 18 C 0.058 3.942 19 C 0.440 3.560 20 O -0.615 6.615 21 N -0.575 5.575 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.269 1.269 28 H -0.270 1.270 29 H -0.275 1.275 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.054 7.535 -2.709 33.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.126 0.874 4 O -0.321 6.321 5 C -0.030 4.030 6 C -0.182 4.182 7 C -0.163 4.163 8 H 0.161 0.839 9 C 0.311 3.689 10 O -0.460 6.460 11 N -0.346 5.346 12 C -0.077 4.077 13 C -0.003 4.003 14 C -0.156 4.156 15 C -0.066 4.066 16 N -0.270 5.270 17 C -0.118 4.118 18 C -0.073 4.073 19 C 0.228 3.772 20 O -0.501 6.501 21 N -0.213 5.213 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.195 1.195 28 H -0.195 1.195 29 H -0.200 1.200 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.122 0.878 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 31.589 7.264 -1.323 32.440 hybrid contribution -1.354 -0.347 -0.802 1.612 sum 30.234 6.918 -2.126 31.088 Atomic orbital electron populations 1.22106 0.95089 1.01794 1.03068 1.22715 0.94186 0.96470 0.83222 0.87368 1.88909 1.41279 1.68275 1.33659 1.23762 0.87277 0.97151 0.94855 1.23174 1.00351 0.97615 0.97015 1.22966 0.95825 0.99855 0.97608 0.83902 1.20693 0.84090 0.84081 0.80056 1.90710 1.62097 1.24322 1.68873 1.47987 1.34223 1.22145 1.30262 1.22182 1.00192 0.82757 1.02571 1.21399 0.84087 0.99259 0.95516 1.21793 0.93383 1.01231 0.99216 1.22083 0.87508 1.00415 0.96639 1.61460 1.01327 1.05851 1.58367 1.22406 1.02805 0.87285 0.99328 1.21725 0.88908 1.00645 0.95996 1.20813 0.85408 0.83868 0.87156 1.90458 1.86532 1.41467 1.31674 1.41940 1.06537 1.43679 1.29094 1.19645 0.86409 1.28401 1.11714 0.90434 1.26049 1.01855 0.95842 0.97667 1.69670 1.28544 1.31615 1.26327 0.84924 0.77043 0.78194 0.78139 1.19453 1.19504 1.19964 0.94514 0.91599 0.90266 0.88423 0.89017 0.86984 0.91924 0.90141 0.89467 0.89528 0.87289 0.91741 0.94250 0.90717 0.92439 0.90913 0.94773 0.93031 0.90355 0.91123 0.87782 0.77032 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.41 71.98 0.61 -2.94 16 2 C 0.09 1.48 3.94 30.97 0.12 1.60 16 3 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 4 O -0.40 -8.37 11.19 -148.98 -1.67 -10.04 16 5 C 0.05 0.59 7.72 72.66 0.56 1.15 16 6 C -0.14 -2.00 6.65 31.89 0.21 -1.79 16 7 C -0.14 -1.90 2.51 -10.55 -0.03 -1.92 16 8 H 0.14 0.72 6.54 -2.38 -0.02 0.71 16 9 C 0.52 10.64 4.61 87.65 0.40 11.05 16 10 O -0.58 -18.04 14.54 -3.05 -0.04 -18.08 16 11 N -0.61 -9.14 2.46 -846.76 -2.08 -11.23 16 12 C 0.06 0.36 9.79 127.77 1.25 1.61 16 13 C 0.12 2.04 5.41 86.38 0.47 2.50 16 14 C -0.12 -2.57 5.46 30.60 0.17 -2.41 16 15 C 0.06 1.49 4.96 86.30 0.43 1.92 16 16 N -0.55 -18.47 4.50 -927.06 -4.17 -22.64 16 17 C 0.03 0.95 8.96 127.69 1.14 2.09 16 18 C 0.06 2.13 5.45 85.56 0.47 2.59 16 19 C 0.44 21.83 7.47 87.66 0.66 22.48 16 20 O -0.62 -35.24 13.91 -3.05 -0.04 -35.28 16 21 N -0.57 -30.49 5.29 -306.99 -1.62 -32.11 16 22 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 26 Si 0.99 43.96 29.55 68.60 2.03 45.99 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 30 H 0.04 1.08 7.00 -2.39 -0.02 1.06 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.53 7.07 -2.39 -0.02 1.51 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.06 1.34 6.93 -2.39 -0.02 1.32 16 37 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.09 0.35 8.07 -2.39 -0.02 0.33 16 39 H 0.09 0.24 6.38 -2.38 -0.02 0.23 16 40 H 0.11 1.14 8.07 -2.39 -0.02 1.12 16 41 H 0.06 1.39 7.42 -2.39 -0.02 1.37 16 42 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.07 1.46 6.55 -2.39 -0.02 1.45 16 44 H 0.06 1.11 8.12 -2.38 -0.02 1.09 16 45 H 0.07 1.79 7.93 -2.39 -0.02 1.77 16 46 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.05 2.12 5.83 -2.39 -0.01 2.11 16 48 H 0.08 2.15 6.47 -2.39 -0.02 2.14 16 49 H 0.07 2.24 8.12 -2.38 -0.02 2.22 16 50 H 0.10 3.44 7.93 -2.39 -0.02 3.43 16 51 H 0.40 19.89 7.90 -92.70 -0.73 19.16 16 52 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -81.64 409.27 0.60 -81.04 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.18 Total: 33.64 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 7.74 Total: 19.06 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -7.59 Total: -116.33 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -1.75 Total: -63.40 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -81.64 0.60 -81.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570214304.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.938 kcal (2) G-P(sol) polarization free energy of solvation -81.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds