Wall clock time and date at job start Wed Apr 1 2020 01:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.99384 * 2 1 4 4 O 1.43741 * 109.87941 * 121.08478 * 2 1 3 5 5 C 1.44376 * 106.97643 * 145.93461 * 4 2 1 6 6 C 1.54996 * 103.49366 * 319.94212 * 5 4 2 7 7 C 1.54097 * 109.87910 * 238.91586 * 2 1 3 8 8 H 1.08996 * 110.48611 * 357.35898 * 7 2 1 9 9 C 1.50702 * 110.48651 * 119.86894 * 7 2 1 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99928 * 179.72368 * 9 7 2 12 12 C 1.46506 * 120.00264 * 0.28128 * 11 9 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 14 14 C 1.53002 * 109.47088 * 89.99979 * 13 11 9 15 15 C 1.52995 * 109.47427 * 179.97438 * 14 13 11 16 16 N 1.46894 * 109.47357 * 180.02562 * 15 14 13 17 17 C 1.46900 * 111.00068 * 293.95425 * 16 15 14 18 18 C 1.46901 * 111.00088 * 170.00361 * 16 15 14 19 19 C 1.50701 * 109.47263 * 190.00202 * 18 16 15 20 20 O 1.21295 * 119.99778 * 359.97438 * 19 18 16 21 21 N 1.34772 * 120.00362 * 180.02562 * 19 18 16 22 22 C 1.37103 * 120.00364 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99798 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99928 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00400 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99875 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46719 * 59.99961 * 26 24 22 28 28 H 1.48497 * 109.47326 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46980 * 300.00366 * 26 24 22 30 30 H 1.09001 * 109.47002 * 181.08418 * 1 2 3 31 31 H 1.09000 * 109.46616 * 301.08397 * 1 2 3 32 32 H 1.08994 * 109.46912 * 61.07918 * 1 2 3 33 33 H 1.09006 * 110.61716 * 78.44600 * 5 4 2 34 34 H 1.09000 * 110.62176 * 201.44025 * 5 4 2 35 35 H 1.08997 * 110.90770 * 278.82299 * 6 5 4 36 36 H 1.09002 * 110.90970 * 155.21733 * 6 5 4 37 37 H 1.08998 * 109.46921 * 89.99095 * 12 11 9 38 38 H 1.08994 * 109.46996 * 209.99677 * 12 11 9 39 39 H 1.09001 * 109.46578 * 329.99540 * 12 11 9 40 40 H 1.09001 * 109.47567 * 210.00057 * 13 11 9 41 41 H 1.09005 * 109.47076 * 330.00563 * 13 11 9 42 42 H 1.08999 * 109.47707 * 300.00330 * 14 13 11 43 43 H 1.09005 * 109.46685 * 60.00344 * 14 13 11 44 44 H 1.09006 * 109.47343 * 300.00688 * 15 14 13 45 45 H 1.09005 * 109.46868 * 60.00504 * 15 14 13 46 46 H 1.09002 * 109.47006 * 60.00195 * 17 16 15 47 47 H 1.09000 * 109.46986 * 179.97438 * 17 16 15 48 48 H 1.08994 * 109.47119 * 300.00065 * 17 16 15 49 49 H 1.08995 * 109.47045 * 309.99664 * 18 16 15 50 50 H 1.08998 * 109.47555 * 69.99968 * 18 16 15 51 51 H 0.97005 * 119.99769 * 359.97438 * 21 19 18 52 52 H 0.96994 * 120.00067 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2379 -1.3642 0.7647 6 6 2.9195 -1.8915 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 1 1.2245 -1.1528 -1.8210 9 6 2.8945 0.1676 -2.0932 10 8 3.0707 1.3188 -1.7547 11 7 3.4554 -0.2945 -3.2282 12 6 3.2430 -1.6852 -3.6370 13 6 4.2774 0.5940 -4.0535 14 6 5.7361 0.5067 -3.5999 15 6 6.5947 1.4341 -4.4621 16 7 7.9952 1.3497 -4.0271 17 6 8.1578 1.8854 -2.6689 18 6 8.8830 2.0376 -4.9740 19 6 10.3178 1.7255 -4.6349 20 8 10.5755 1.0016 -3.6964 21 7 11.3147 2.2515 -5.3738 22 6 12.6200 1.9680 -5.0649 23 1 12.8495 1.3235 -4.2293 24 6 13.6477 2.5099 -5.8271 25 7 13.3686 3.2946 -6.8436 26 14 15.4263 2.1242 -5.4058 27 1 15.6490 0.6586 -5.4934 28 1 16.3237 2.8189 -6.3635 29 1 15.7199 2.5879 -4.0259 30 1 -0.3633 -1.0275 0.0194 31 1 -0.3632 0.5306 0.8801 32 1 -0.3633 0.4970 -0.8995 33 1 4.0685 -0.6589 0.7356 34 1 3.4584 -2.1908 1.4400 35 1 2.3540 -2.8220 -0.6099 36 1 3.8332 -2.0224 -1.2375 37 1 2.3550 -1.7474 -4.2660 38 1 4.1100 -2.0359 -4.1966 39 1 3.1058 -2.3069 -2.7522 40 1 4.2031 0.2918 -5.0981 41 1 3.9244 1.6197 -3.9459 42 1 5.8106 0.8089 -2.5553 43 1 6.0891 -0.5190 -3.7075 44 1 6.5202 1.1314 -5.5067 45 1 6.2418 2.4598 -4.3550 46 1 7.5415 1.3123 -1.9762 47 1 9.2037 1.8104 -2.3716 48 1 7.8486 2.9304 -2.6512 49 1 8.6670 1.6979 -5.9869 50 1 8.7200 3.1134 -4.9090 51 1 11.1086 2.8308 -6.1241 52 1 14.0860 3.6726 -7.3758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570214305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:57 Heat of formation + Delta-G solvation = -105.777135 kcal Electronic energy + Delta-G solvation = -30150.595591 eV Core-core repulsion = 25957.620581 eV Total energy + Delta-G solvation = -4192.975010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11634 -38.98934 -38.56891 -36.88562 -35.93571 -33.90127 -33.30158 -32.08664 -31.51968 -31.19426 -27.99280 -27.42291 -27.22837 -25.89435 -24.74968 -23.18930 -22.78648 -21.61236 -20.75111 -19.54564 -19.09993 -17.81528 -17.57854 -16.90317 -16.45574 -16.17664 -15.86315 -15.48308 -15.45751 -15.38939 -14.78780 -14.59799 -14.28359 -13.93701 -13.73136 -13.66732 -13.55480 -13.33453 -13.25545 -12.96036 -12.90326 -12.61004 -12.29993 -12.12931 -12.02019 -11.92050 -11.66860 -11.59170 -11.46208 -11.39284 -11.28904 -11.21065 -11.16557 -10.88136 -10.56752 -10.42961 -10.20274 -10.17403 -9.86169 -9.44993 -9.04416 -8.41628 -7.95599 -7.81314 -6.39899 -3.80669 2.22196 2.57155 3.21095 3.26547 3.30988 3.42908 3.93031 3.97670 3.99889 4.07155 4.26586 4.27370 4.50084 4.64138 4.77753 4.80608 4.83848 4.92600 5.00804 5.07484 5.11162 5.14010 5.18961 5.22567 5.26282 5.27350 5.30964 5.33371 5.40726 5.49520 5.52409 5.63881 5.70309 5.75086 5.79309 5.80396 5.96411 6.01945 6.03489 6.13947 6.25826 6.31909 6.52283 6.62480 6.97505 7.32341 7.44079 7.56674 7.79096 8.08361 8.64200 9.20014 9.56703 10.08953 10.77835 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.001744 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.745514 B =16049.295896 C =16468.787489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 H 0.094 0.906 4 O -0.372 6.372 5 C 0.047 3.953 6 C -0.150 4.150 7 C -0.142 4.142 8 H 0.111 0.889 9 C 0.520 3.480 10 O -0.531 6.531 11 N -0.612 5.612 12 C 0.064 3.936 13 C 0.115 3.885 14 C -0.129 4.129 15 C 0.058 3.942 16 N -0.519 5.519 17 C 0.022 3.978 18 C 0.046 3.954 19 C 0.444 3.556 20 O -0.578 6.578 21 N -0.565 5.565 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.014 0.986 49 H 0.087 0.913 50 H 0.047 0.953 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.873 -9.229 5.903 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 H 0.112 0.888 4 O -0.291 6.291 5 C -0.030 4.030 6 C -0.187 4.187 7 C -0.164 4.164 8 H 0.129 0.871 9 C 0.308 3.692 10 O -0.407 6.407 11 N -0.345 5.345 12 C -0.079 4.079 13 C -0.007 4.007 14 C -0.168 4.168 15 C -0.071 4.071 16 N -0.242 5.242 17 C -0.126 4.126 18 C -0.086 4.086 19 C 0.230 3.770 20 O -0.462 6.462 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.032 0.968 49 H 0.105 0.895 50 H 0.065 0.935 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.433 -9.496 6.779 28.894 hybrid contribution 0.693 0.948 -0.814 1.429 sum -25.741 -8.547 5.965 27.771 Atomic orbital electron populations 1.21915 0.93344 1.02625 1.02740 1.22798 0.95114 0.97238 0.82702 0.88800 1.88881 1.39496 1.67792 1.32949 1.23567 0.88145 0.96644 0.94626 1.23292 1.00454 0.97754 0.97248 1.22743 0.99219 0.96556 0.97877 0.87089 1.20354 0.79762 0.88152 0.80971 1.90708 1.60900 1.18723 1.70391 1.47803 1.50413 1.12475 1.23805 1.22100 1.02378 0.81785 1.01652 1.21515 0.90249 0.95109 0.93875 1.21910 0.93000 1.01145 1.00736 1.22027 0.88454 0.97605 0.99022 1.61566 1.03683 1.56519 1.02466 1.22550 1.04768 0.95773 0.89493 1.21863 0.93288 0.96682 0.96740 1.19751 0.85985 0.85290 0.85985 1.90480 1.83999 1.40541 1.31166 1.41865 1.05513 1.43858 1.28940 1.19648 0.80974 1.28100 1.14108 0.87991 1.25255 1.00444 0.96502 0.95764 1.69604 1.33917 1.32426 1.18456 0.85920 0.81465 0.78645 0.78188 1.19921 1.21000 1.19940 0.91966 0.91487 0.91269 0.91768 0.88459 0.89142 0.89080 0.92385 0.90339 0.90138 0.90252 0.89828 0.91358 0.90884 0.90903 0.95035 0.92202 0.88708 0.96797 0.89466 0.93516 0.77503 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.36 37.16 0.35 -0.69 16 2 C 0.08 0.73 3.67 -26.16 -0.10 0.64 16 3 H 0.09 1.09 6.43 -51.93 -0.33 0.76 16 4 O -0.37 -3.85 11.19 -35.23 -0.39 -4.24 16 5 C 0.05 0.38 7.72 38.21 0.29 0.67 16 6 C -0.15 -0.92 5.17 -24.72 -0.13 -1.04 16 7 C -0.14 -1.06 2.23 -90.24 -0.20 -1.26 16 8 H 0.11 0.59 7.63 -51.93 -0.40 0.19 16 9 C 0.52 5.29 6.98 -10.98 -0.08 5.21 16 10 O -0.53 -7.50 14.83 5.55 0.08 -7.42 16 11 N -0.61 -5.13 2.85 -181.57 -0.52 -5.65 16 12 C 0.06 0.32 9.85 59.85 0.59 0.91 16 13 C 0.12 1.06 5.41 -4.04 -0.02 1.04 16 14 C -0.13 -1.47 5.46 -26.73 -0.15 -1.62 16 15 C 0.06 0.75 4.96 -3.83 -0.02 0.73 16 16 N -0.52 -8.90 4.50 -244.38 -1.10 -10.00 16 17 C 0.02 0.38 8.96 60.06 0.54 0.92 16 18 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 19 C 0.44 10.64 7.48 -10.99 -0.08 10.56 16 20 O -0.58 -15.72 13.91 5.54 0.08 -15.65 16 21 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 22 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 26 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.54 6.26 -51.93 -0.33 0.21 16 37 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.36 8.07 -51.93 -0.42 -0.05 16 39 H 0.08 0.31 4.35 -51.93 -0.23 0.08 16 40 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 41 H 0.08 0.89 7.42 -51.93 -0.39 0.51 16 42 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 45 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 46 H 0.06 0.95 6.47 -51.93 -0.34 0.61 16 47 H 0.09 1.97 5.82 -51.93 -0.30 1.66 16 48 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 50 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 51 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -34.27 410.19 -8.08 -42.36 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.79 Total: 7.90 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 0.73 Total: 8.83 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.95 Total: -54.11 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.23 Total: -27.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.27 -8.08 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570214305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.421 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds