Wall clock time and date at job start Wed Apr 1 2020 01:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67853 * 2 1 4 4 O 1.44478 * 110.65583 * 237.00731 * 2 1 3 5 5 C 1.43746 * 106.98554 * 201.45586 * 4 2 1 6 6 C 1.54100 * 107.29659 * 26.51171 * 5 4 2 7 7 C 1.54817 * 104.18606 * 357.97343 * 6 5 4 8 8 H 1.09002 * 110.90844 * 97.31763 * 7 6 5 9 9 C 1.50702 * 110.90659 * 220.88670 * 7 6 5 10 10 O 1.21273 * 119.99869 * 115.67124 * 9 7 6 11 11 N 1.34779 * 119.99708 * 295.66813 * 9 7 6 12 12 C 1.46499 * 120.00205 * 0.02562 * 11 9 7 13 13 C 1.46500 * 119.99547 * 179.97438 * 11 9 7 14 14 C 1.53006 * 109.46907 * 90.00322 * 13 11 9 15 15 C 1.53001 * 109.47227 * 179.97438 * 14 13 11 16 16 N 1.46896 * 109.46951 * 179.97438 * 15 14 13 17 17 C 1.46904 * 110.99832 * 66.05095 * 16 15 14 18 18 C 1.46903 * 110.99925 * 190.00079 * 16 15 14 19 19 C 1.50705 * 109.47172 * 170.00232 * 18 16 15 20 20 O 1.21290 * 119.99765 * 0.02562 * 19 18 16 21 21 N 1.34777 * 120.00007 * 180.02562 * 19 18 16 22 22 C 1.37090 * 120.00142 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99839 * 359.97438 * 22 21 19 24 24 C 1.38943 * 120.00429 * 180.02562 * 22 21 19 25 25 N 1.31419 * 119.99707 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00492 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46863 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47182 * 119.99766 * 26 24 22 29 29 H 1.48495 * 109.46936 * 240.00113 * 26 24 22 30 30 H 1.09000 * 109.47038 * 297.03429 * 1 2 3 31 31 H 1.09002 * 109.47096 * 57.03031 * 1 2 3 32 32 H 1.09001 * 109.47472 * 177.03187 * 1 2 3 33 33 H 1.09002 * 109.87733 * 267.08885 * 5 4 2 34 34 H 1.08999 * 109.88004 * 145.93837 * 5 4 2 35 35 H 1.08991 * 110.48958 * 239.30057 * 6 5 4 36 36 H 1.08998 * 110.49031 * 116.64700 * 6 5 4 37 37 H 1.08992 * 109.47035 * 89.99748 * 12 11 9 38 38 H 1.09002 * 109.46911 * 210.00066 * 12 11 9 39 39 H 1.09000 * 109.46893 * 329.99767 * 12 11 9 40 40 H 1.08997 * 109.47165 * 209.99650 * 13 11 9 41 41 H 1.09000 * 109.47837 * 330.00477 * 13 11 9 42 42 H 1.08998 * 109.46991 * 300.00065 * 14 13 11 43 43 H 1.09000 * 109.47090 * 59.99909 * 14 13 11 44 44 H 1.08995 * 109.47083 * 300.00367 * 15 14 13 45 45 H 1.09000 * 109.46804 * 60.00170 * 15 14 13 46 46 H 1.08997 * 109.47461 * 59.99941 * 17 16 15 47 47 H 1.09005 * 109.46737 * 179.97438 * 17 16 15 48 48 H 1.08998 * 109.47220 * 299.99469 * 17 16 15 49 49 H 1.08999 * 109.47065 * 290.00386 * 18 16 15 50 50 H 1.08997 * 109.47208 * 50.00564 * 18 16 15 51 51 H 0.97001 * 119.99883 * 0.02562 * 21 19 18 52 52 H 0.96997 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0396 -0.7362 -1.1339 5 6 3.3850 -1.1261 -0.8111 6 6 3.4798 -1.2169 0.7243 7 6 2.0758 -0.7895 1.2171 8 1 1.4549 -1.6607 1.4258 9 6 2.1789 0.0975 2.4310 10 8 1.8023 1.2489 2.3745 11 7 2.6895 -0.3889 3.5796 12 6 3.1449 -1.7797 3.6477 13 6 2.7902 0.4735 4.7595 14 6 1.5055 0.3630 5.5832 15 6 1.6109 1.2632 6.8158 16 7 0.3772 1.1574 7.6062 17 6 0.2272 -0.1908 8.1699 18 6 0.3402 2.1771 8.6631 19 6 -1.0301 2.2011 9.2901 20 8 -1.8908 1.4431 8.8956 21 7 -1.2990 3.0649 10.2891 22 6 -2.5456 3.0872 10.8591 23 1 -3.3123 2.4128 10.5073 24 6 -2.8230 3.9780 11.8886 25 7 -1.8905 4.7997 12.3156 26 14 -4.5214 4.0079 12.6658 27 1 -5.3839 2.9926 12.0097 28 1 -4.4085 3.7007 14.1142 29 1 -5.1222 5.3546 12.4907 30 1 -0.3633 0.4671 0.9154 31 1 -0.3633 0.5593 -0.8622 32 1 -0.3634 -1.0263 -0.0532 33 1 4.0866 -0.3790 -1.1822 34 1 3.6059 -2.0972 -1.2541 35 1 4.2406 -0.5332 1.1007 36 1 3.6977 -2.2392 1.0334 37 1 4.1978 -1.8312 3.3709 38 1 3.0174 -2.1543 4.6634 39 1 2.5581 -2.3882 2.9597 40 1 3.6393 0.1604 5.3670 41 1 2.9312 1.5071 4.4433 42 1 0.6564 0.6760 4.9757 43 1 1.3646 -0.6706 5.8995 44 1 2.4600 0.9497 7.4231 45 1 1.7521 2.2968 6.4998 46 1 1.0765 -0.4109 8.8167 47 1 -0.6939 -0.2413 8.7507 48 1 0.1876 -0.9204 7.3612 49 1 1.0837 1.9391 9.4238 50 1 0.5601 3.1542 8.2332 51 1 -0.6107 3.6714 10.6043 52 1 -2.0840 5.4214 13.0346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570214306.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:59 Heat of formation + Delta-G solvation = -135.954242 kcal Electronic energy + Delta-G solvation = -29947.794789 eV Core-core repulsion = 25753.511201 eV Total energy + Delta-G solvation = -4194.283588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66739 -40.40313 -39.69208 -38.22467 -36.80389 -35.88755 -34.03085 -33.29025 -32.77199 -32.28247 -29.45727 -28.21896 -27.89945 -27.06518 -26.29457 -24.42485 -22.92589 -22.58035 -21.78866 -20.99268 -20.18695 -19.85212 -18.47217 -17.89331 -17.39734 -17.18408 -16.73804 -16.64037 -16.44754 -16.27539 -16.12720 -15.80730 -15.72657 -15.16484 -14.99922 -14.89182 -14.63640 -14.42235 -13.98869 -13.76288 -13.55027 -13.49970 -13.40275 -13.18734 -13.06287 -12.98313 -12.85330 -12.78788 -12.71124 -12.50359 -12.39398 -12.34997 -12.27841 -12.11972 -12.08359 -11.70787 -11.52794 -11.46492 -10.90225 -10.63290 -10.29269 -10.00295 -9.69720 -9.17527 -8.46967 -5.95587 1.35898 1.40891 1.52329 1.55289 1.93291 2.05060 2.28382 2.75877 2.81479 3.19762 3.40511 3.43717 3.57376 3.60934 3.92090 3.98354 4.11481 4.14386 4.16208 4.23633 4.30876 4.35185 4.37974 4.40006 4.46803 4.53053 4.56407 4.59025 4.62215 4.66423 4.70271 4.71294 4.81799 4.83649 4.87249 4.97336 5.02600 5.04983 5.10561 5.16747 5.18336 5.29496 5.41031 5.54814 5.87571 5.89290 6.08514 6.25193 6.33706 6.60800 7.10494 7.12989 7.56325 8.12560 8.70723 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.001706 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.308261 B =16411.012165 C =16994.550112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 H 0.061 0.939 4 O -0.392 6.392 5 C 0.040 3.960 6 C -0.135 4.135 7 C -0.136 4.136 8 H 0.129 0.871 9 C 0.518 3.482 10 O -0.579 6.579 11 N -0.611 5.611 12 C 0.066 3.934 13 C 0.120 3.880 14 C -0.117 4.117 15 C 0.061 3.939 16 N -0.546 5.546 17 C 0.029 3.971 18 C 0.058 3.942 19 C 0.440 3.560 20 O -0.615 6.615 21 N -0.575 5.575 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.034 0.966 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.105 0.895 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.963 -15.436 -20.887 32.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 H 0.079 0.921 4 O -0.312 6.312 5 C -0.037 4.037 6 C -0.173 4.173 7 C -0.157 4.157 8 H 0.146 0.854 9 C 0.306 3.694 10 O -0.459 6.459 11 N -0.342 5.342 12 C -0.075 4.075 13 C -0.003 4.003 14 C -0.156 4.156 15 C -0.067 4.067 16 N -0.270 5.270 17 C -0.119 4.119 18 C -0.073 4.073 19 C 0.228 3.772 20 O -0.501 6.501 21 N -0.213 5.213 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.123 0.877 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.714 -15.177 -21.529 31.744 hybrid contribution -0.027 0.733 1.467 1.640 sum 17.687 -14.444 -20.063 30.397 Atomic orbital electron populations 1.21727 0.92610 1.03258 1.02453 1.22878 0.95759 0.94736 0.83444 0.92120 1.88902 1.29216 1.73775 1.39303 1.23368 0.83556 1.01846 0.94904 1.23005 0.94018 1.04873 0.95394 1.22914 1.00694 0.99467 0.92638 0.85373 1.20699 0.76338 0.87510 0.84815 1.90720 1.49837 1.20502 1.84804 1.47932 1.61764 1.14138 1.10382 1.22211 1.01145 0.79446 1.04720 1.21422 0.97675 0.95410 0.85773 1.21783 0.98089 1.00184 0.95536 1.22085 0.89615 1.00808 0.94145 1.61469 1.37880 1.03937 1.23729 1.22411 1.00749 0.89407 0.99307 1.21728 0.93289 0.97975 0.94292 1.20817 0.91228 0.83004 0.82172 1.90458 1.50197 1.44239 1.65253 1.41944 1.13083 1.34339 1.31899 1.19688 0.90360 1.20007 1.16092 0.90413 1.26043 1.03167 0.95063 0.97086 1.69682 1.34949 1.22433 1.29127 0.84863 0.77168 0.78240 0.78010 1.19888 1.19435 1.19684 0.91951 0.91673 0.90732 0.92094 0.87300 0.90301 0.86214 0.90111 0.89674 0.89615 0.87298 0.91509 0.94178 0.90847 0.92465 0.90766 0.94785 0.93008 0.90378 0.91138 0.87693 0.77028 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.66 71.98 0.70 -2.01 16 2 C 0.09 1.71 3.05 31.28 0.10 1.80 16 3 H 0.06 1.42 7.48 -2.39 -0.02 1.40 16 4 O -0.39 -7.16 11.23 -148.98 -1.67 -8.83 16 5 C 0.04 0.42 7.70 72.35 0.56 0.97 16 6 C -0.14 -1.06 5.32 31.59 0.17 -0.89 16 7 C -0.14 -1.90 1.96 -10.24 -0.02 -1.92 16 8 H 0.13 1.38 7.32 -2.39 -0.02 1.36 16 9 C 0.52 10.31 6.95 87.66 0.61 10.92 16 10 O -0.58 -17.19 15.34 -3.01 -0.05 -17.24 16 11 N -0.61 -8.92 2.87 -846.76 -2.43 -11.35 16 12 C 0.07 0.37 9.13 127.77 1.17 1.54 16 13 C 0.12 1.97 5.41 86.38 0.47 2.43 16 14 C -0.12 -2.51 5.46 30.60 0.17 -2.34 16 15 C 0.06 1.46 4.96 86.30 0.43 1.88 16 16 N -0.55 -18.21 4.50 -927.04 -4.17 -22.39 16 17 C 0.03 0.92 8.96 127.69 1.14 2.07 16 18 C 0.06 2.09 5.45 85.56 0.47 2.56 16 19 C 0.44 21.64 7.47 87.66 0.66 22.29 16 20 O -0.62 -34.97 13.91 -3.06 -0.04 -35.01 16 21 N -0.58 -30.26 5.29 -306.99 -1.62 -31.88 16 22 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.76 5.50 84.92 0.47 -0.30 16 25 N -0.92 -50.36 13.05 21.66 0.28 -50.07 16 26 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.67 7.85 -2.39 -0.02 0.65 16 36 H 0.12 0.18 7.53 -2.39 -0.02 0.16 16 37 H 0.08 0.15 8.04 -2.39 -0.02 0.13 16 38 H 0.08 0.36 8.07 -2.39 -0.02 0.34 16 39 H 0.09 0.28 6.05 -2.39 -0.01 0.26 16 40 H 0.11 1.10 8.07 -2.39 -0.02 1.08 16 41 H 0.07 1.38 7.42 -2.39 -0.02 1.36 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.42 6.55 -2.39 -0.02 1.41 16 44 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 45 H 0.07 1.77 7.93 -2.39 -0.02 1.75 16 46 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.05 2.11 5.82 -2.38 -0.01 2.10 16 48 H 0.08 2.13 6.47 -2.39 -0.02 2.11 16 49 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 50 H 0.11 3.41 7.93 -2.39 -0.02 3.39 16 51 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 52 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -78.76 412.87 0.38 -78.38 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.18 Total: 32.10 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 7.88 Total: 20.58 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -7.94 Total: -115.69 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -1.76 Total: -61.08 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -78.76 0.38 -78.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570214306.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.569 kcal (2) G-P(sol) polarization free energy of solvation -78.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds