Wall clock time and date at job start Wed Apr 1 2020 00:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 O 1.42901 * 109.46860 * 119.99796 * 2 1 3 5 5 C 1.42899 * 113.99607 * 149.99921 * 4 2 1 6 6 C 1.50702 * 109.46876 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09004 * 109.52329 * 35.13010 * 9 8 6 11 11 C 1.53123 * 109.52529 * 275.00422 * 9 8 6 12 12 C 1.53036 * 109.27751 * 182.43803 * 11 9 8 13 13 N 1.46850 * 109.52417 * 59.18024 * 12 11 9 14 14 C 1.46896 * 110.99850 * 174.15987 * 13 12 11 15 15 C 1.50699 * 109.47529 * 66.04567 * 14 13 12 16 16 O 1.21293 * 119.99647 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00405 * 179.97438 * 15 14 13 18 18 C 1.37102 * 120.00047 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99873 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99552 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99789 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00450 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47048 * 90.00239 * 22 20 18 24 24 H 1.48498 * 109.46989 * 209.99930 * 22 20 18 25 25 H 1.48494 * 109.47071 * 330.00293 * 22 20 18 26 26 C 1.46845 * 111.19662 * 298.25754 * 13 12 11 27 27 H 1.09002 * 109.45978 * 301.72426 * 26 13 12 28 28 C 1.52996 * 109.46234 * 181.75051 * 26 13 12 29 29 C 1.53030 * 109.52544 * 61.73965 * 26 13 12 30 30 H 1.08994 * 109.46865 * 299.99979 * 1 2 3 31 31 H 1.09002 * 109.46664 * 60.00131 * 1 2 3 32 32 H 1.08998 * 109.46531 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47218 * 239.99609 * 2 1 3 34 34 H 1.08998 * 109.47457 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47231 * 300.00030 * 3 2 1 36 36 H 1.09004 * 109.47138 * 59.99644 * 3 2 1 37 37 H 1.09004 * 109.47206 * 60.00168 * 5 4 2 38 38 H 1.08994 * 109.47548 * 299.99825 * 5 4 2 39 39 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 40 40 H 1.08999 * 109.50098 * 302.38068 * 11 9 8 41 41 H 1.08998 * 109.50085 * 62.45962 * 11 9 8 42 42 H 1.08999 * 109.46537 * 179.19751 * 12 11 9 43 43 H 1.08999 * 109.46447 * 299.16333 * 12 11 9 44 44 H 1.09007 * 109.47163 * 186.04926 * 14 13 12 45 45 H 1.09001 * 109.47486 * 306.04182 * 14 13 12 46 46 H 0.97001 * 119.99985 * 359.97438 * 17 15 14 47 47 H 0.97004 * 120.00411 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.47461 * 59.99453 * 28 26 13 49 49 H 1.08995 * 109.47593 * 180.02562 * 28 26 13 50 50 H 1.09007 * 109.46733 * 299.99782 * 28 26 13 51 51 H 1.09002 * 109.50806 * 180.87909 * 29 26 13 52 52 H 1.08999 * 109.50493 * 60.76241 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6699 -1.9978 2.2750 7 8 2.9497 -1.9276 3.2483 8 7 4.8285 -2.6830 2.3420 9 6 5.2182 -3.3426 3.5907 10 1 4.3296 -3.7229 4.0946 11 6 5.9311 -2.3374 4.4996 12 6 6.3894 -3.0468 5.7758 13 7 7.2967 -4.1474 5.4268 14 6 7.8654 -4.7635 6.6330 15 6 6.7692 -5.4375 7.4174 16 8 5.6266 -5.4072 7.0117 17 7 7.0586 -6.0740 8.5696 18 6 6.0614 -6.6876 9.2829 19 1 5.0440 -6.6606 8.9216 20 6 6.3597 -7.3433 10.4710 21 7 5.4039 -7.9310 11.1550 22 14 8.1194 -7.3893 11.0962 23 1 8.3644 -6.2154 11.9721 24 1 8.3373 -8.6380 11.8698 25 1 9.0552 -7.3511 9.9439 26 6 6.6201 -5.1492 4.5932 27 1 5.7512 -5.5371 5.1249 28 6 7.5859 -6.2964 4.2899 29 6 6.1686 -4.5027 3.2817 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 4.0200 -0.5873 0.7125 38 1 3.1809 -2.0707 0.1987 39 1 5.4044 -2.7394 1.5635 40 1 6.7972 -1.9275 3.9800 41 1 5.2456 -1.5301 4.7573 42 1 6.9098 -2.3371 6.4189 43 1 5.5215 -3.4445 6.3019 44 1 8.6135 -5.5023 6.3455 45 1 8.3322 -3.9943 7.2483 46 1 7.9725 -6.0985 8.8939 47 1 5.6121 -8.3891 11.9843 48 1 7.9070 -6.7576 5.2239 49 1 7.0841 -7.0399 3.6707 50 1 8.4552 -5.9086 3.7585 51 1 5.6527 -5.2427 2.6698 52 1 7.0384 -4.1269 2.7429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570432260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:33 Heat of formation + Delta-G solvation = -112.688987 kcal Electronic energy + Delta-G solvation = -30636.898878 eV Core-core repulsion = 26443.624147 eV Total energy + Delta-G solvation = -4193.274731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.30717 -39.51696 -38.35756 -37.36923 -35.01977 -33.89738 -33.12766 -32.15258 -31.90882 -31.57129 -28.46844 -27.58556 -26.90226 -26.60726 -24.26907 -22.68290 -21.73365 -21.60697 -20.46010 -19.81062 -19.35311 -18.13831 -17.35767 -17.30635 -16.31376 -15.95817 -15.79517 -15.42658 -15.30477 -14.89908 -14.81779 -14.65777 -14.36741 -13.90898 -13.63389 -13.42236 -13.27534 -13.07508 -12.99635 -12.79551 -12.54391 -12.45861 -12.30600 -12.24839 -11.86241 -11.81471 -11.78122 -11.66215 -11.41669 -11.21748 -11.10461 -10.89325 -10.64811 -10.61138 -10.45467 -10.29446 -10.02899 -10.00712 -9.73471 -9.51367 -9.29067 -9.05391 -8.20349 -7.46582 -6.34882 -3.86072 2.54032 2.62619 3.00111 3.04790 3.13219 3.65706 3.69572 4.07038 4.22335 4.42172 4.59068 4.64388 4.67856 4.75662 4.79346 4.86408 4.88099 5.00291 5.14750 5.21408 5.21989 5.32861 5.39057 5.41766 5.47637 5.58395 5.65267 5.67361 5.75574 5.76544 5.80907 5.85737 5.88266 5.92018 5.96970 6.06572 6.14094 6.18199 6.23913 6.36879 6.46570 6.58814 6.76421 6.80426 7.29463 7.41656 7.44509 7.53308 8.12056 8.16965 8.54216 8.91144 9.38632 9.77197 10.77939 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002047 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.334096 B =13674.110002 C =14309.779454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.356 6.356 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.513 6.513 8 N -0.725 5.725 9 C 0.146 3.854 10 H 0.091 0.909 11 C -0.118 4.118 12 C 0.044 3.956 13 N -0.509 5.509 14 C 0.035 3.965 15 C 0.415 3.585 16 O -0.574 6.574 17 N -0.584 5.584 18 C -0.307 4.307 19 H 0.119 0.881 20 C 0.042 3.958 21 N -0.878 5.878 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.059 3.941 27 H 0.097 0.903 28 C -0.143 4.143 29 C -0.110 4.110 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.397 0.603 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.371 0.629 47 H 0.274 0.726 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.068 0.932 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 13.492 -24.286 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.275 6.275 5 C -0.035 4.035 6 C 0.294 3.706 7 O -0.387 6.387 8 N -0.378 5.378 9 C 0.042 3.958 10 H 0.109 0.891 11 C -0.157 4.157 12 C -0.084 4.084 13 N -0.233 5.233 14 C -0.097 4.097 15 C 0.201 3.799 16 O -0.458 6.458 17 N -0.222 5.222 18 C -0.436 4.436 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.518 5.518 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.049 4.049 27 H 0.114 0.886 28 C -0.200 4.200 29 C -0.149 4.149 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.204 0.796 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.086 0.914 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.114 13.643 -23.752 27.473 hybrid contribution 1.257 -0.490 0.553 1.458 sum 3.370 13.153 -23.199 26.880 Atomic orbital electron populations 1.21857 0.93235 1.02996 1.02652 1.22177 0.95433 0.92470 0.87828 1.22317 1.01466 0.96763 1.02841 1.88096 1.34581 1.69658 1.35144 1.22239 0.88239 0.97041 0.96023 1.20245 0.81375 0.79284 0.89690 1.90778 1.51573 1.58820 1.37482 1.46014 1.22103 1.54331 1.15344 1.21095 0.98450 0.92379 0.83863 0.89109 1.21891 0.99627 0.97982 0.96203 1.22169 0.97153 0.92896 0.96214 1.62479 1.35136 1.09893 1.15766 1.22147 0.96688 0.99319 0.91502 1.21060 0.90750 0.84610 0.83431 1.90441 1.22122 1.64134 1.69146 1.42410 1.09548 1.48934 1.21318 1.19454 0.91822 1.29395 1.02894 0.86329 1.25080 0.97957 0.96813 0.96311 1.69629 1.32025 1.34417 1.15713 0.86666 0.84238 0.78889 0.79584 1.19582 1.20153 1.19413 1.21924 0.98654 0.91645 0.92712 0.88577 1.21844 0.99168 0.97342 1.01657 1.21847 0.98340 0.96529 0.98176 0.91504 0.91171 0.91819 0.92111 0.92522 0.91534 0.91493 0.90529 0.90436 0.76949 0.91646 0.91461 0.91340 0.91086 0.88853 0.89381 0.79646 0.91563 0.92353 0.92596 0.92595 0.91381 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.56 37.16 0.36 -0.71 16 2 C 0.08 0.60 3.34 -26.73 -0.09 0.52 16 3 C -0.18 -1.15 9.53 37.16 0.35 -0.80 16 4 O -0.36 -4.10 9.52 -55.14 -0.52 -4.63 16 5 C 0.04 0.40 6.23 36.01 0.22 0.62 16 6 C 0.51 6.49 7.87 -10.98 -0.09 6.40 16 7 O -0.51 -9.39 16.17 -14.35 -0.23 -9.62 16 8 N -0.73 -7.56 5.08 -53.68 -0.27 -7.84 16 9 C 0.15 1.96 2.52 -67.81 -0.17 1.78 16 10 H 0.09 1.57 7.58 -51.93 -0.39 1.17 16 11 C -0.12 -1.63 5.67 -26.65 -0.15 -1.78 16 12 C 0.04 0.71 5.09 -3.83 -0.02 0.69 16 13 N -0.51 -7.84 4.69 -228.13 -1.07 -8.91 16 14 C 0.04 0.58 5.30 -4.98 -0.03 0.55 16 15 C 0.42 9.03 7.04 -10.99 -0.08 8.95 16 16 O -0.57 -14.43 11.20 5.55 0.06 -14.36 16 17 N -0.58 -13.62 5.09 -10.96 -0.06 -13.68 16 18 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 22 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 26 C 0.06 0.90 1.95 -67.73 -0.13 0.77 16 27 H 0.10 1.90 5.36 -51.93 -0.28 1.62 16 28 C -0.14 -1.93 8.76 37.16 0.33 -1.60 16 29 C -0.11 -1.34 4.84 -26.65 -0.13 -1.47 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 34 H 0.06 0.34 7.87 -51.93 -0.41 -0.06 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 38 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.40 2.66 8.60 -40.82 -0.35 2.31 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 43 H 0.07 1.43 6.00 -51.93 -0.31 1.12 16 44 H 0.09 1.35 6.33 -51.93 -0.33 1.02 16 45 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 46 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.06 0.87 6.24 -51.93 -0.32 0.55 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -35.03 406.43 -8.69 -43.72 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -8.91 Total: 13.26 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 0.13 Total: 6.24 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.62 Total: -55.27 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.69 Total: -28.61 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.03 -8.69 -43.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570432260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.972 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds