Wall clock time and date at job start Wed Apr 1 2020 00:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 O 1.42901 * 109.46860 * 119.99796 * 2 1 3 5 5 C 1.42899 * 113.99607 * 149.99921 * 4 2 1 6 6 C 1.50702 * 109.46876 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09004 * 109.52329 * 35.13010 * 9 8 6 11 11 C 1.53123 * 109.52529 * 275.00422 * 9 8 6 12 12 C 1.53036 * 109.27751 * 182.43803 * 11 9 8 13 13 N 1.46850 * 109.52417 * 59.18024 * 12 11 9 14 14 C 1.46896 * 110.99850 * 174.15987 * 13 12 11 15 15 C 1.50699 * 109.47529 * 66.04567 * 14 13 12 16 16 O 1.21293 * 119.99647 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00405 * 179.97438 * 15 14 13 18 18 C 1.37102 * 120.00047 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99873 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99552 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99789 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00450 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47048 * 90.00239 * 22 20 18 24 24 H 1.48498 * 109.46989 * 209.99930 * 22 20 18 25 25 H 1.48494 * 109.47071 * 330.00293 * 22 20 18 26 26 C 1.46845 * 111.19662 * 298.25754 * 13 12 11 27 27 H 1.09002 * 109.45978 * 301.72426 * 26 13 12 28 28 C 1.52996 * 109.46234 * 181.75051 * 26 13 12 29 29 C 1.53030 * 109.52544 * 61.73965 * 26 13 12 30 30 H 1.08994 * 109.46865 * 299.99979 * 1 2 3 31 31 H 1.09002 * 109.46664 * 60.00131 * 1 2 3 32 32 H 1.08998 * 109.46531 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47218 * 239.99609 * 2 1 3 34 34 H 1.08998 * 109.47457 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47231 * 300.00030 * 3 2 1 36 36 H 1.09004 * 109.47138 * 59.99644 * 3 2 1 37 37 H 1.09004 * 109.47206 * 60.00168 * 5 4 2 38 38 H 1.08994 * 109.47548 * 299.99825 * 5 4 2 39 39 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 40 40 H 1.08999 * 109.50098 * 302.38068 * 11 9 8 41 41 H 1.08998 * 109.50085 * 62.45962 * 11 9 8 42 42 H 1.08999 * 109.46537 * 179.19751 * 12 11 9 43 43 H 1.08999 * 109.46447 * 299.16333 * 12 11 9 44 44 H 1.09007 * 109.47163 * 186.04926 * 14 13 12 45 45 H 1.09001 * 109.47486 * 306.04182 * 14 13 12 46 46 H 0.97001 * 119.99985 * 359.97438 * 17 15 14 47 47 H 0.97004 * 120.00411 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.47461 * 59.99453 * 28 26 13 49 49 H 1.08995 * 109.47593 * 180.02562 * 28 26 13 50 50 H 1.09007 * 109.46733 * 299.99782 * 28 26 13 51 51 H 1.09002 * 109.50806 * 180.87909 * 29 26 13 52 52 H 1.08999 * 109.50493 * 60.76241 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6699 -1.9978 2.2750 7 8 2.9497 -1.9276 3.2483 8 7 4.8285 -2.6830 2.3420 9 6 5.2182 -3.3426 3.5907 10 1 4.3296 -3.7229 4.0946 11 6 5.9311 -2.3374 4.4996 12 6 6.3894 -3.0468 5.7758 13 7 7.2967 -4.1474 5.4268 14 6 7.8654 -4.7635 6.6330 15 6 6.7692 -5.4375 7.4174 16 8 5.6266 -5.4072 7.0117 17 7 7.0586 -6.0740 8.5696 18 6 6.0614 -6.6876 9.2829 19 1 5.0440 -6.6606 8.9216 20 6 6.3597 -7.3433 10.4710 21 7 5.4039 -7.9310 11.1550 22 14 8.1194 -7.3893 11.0962 23 1 8.3644 -6.2154 11.9721 24 1 8.3373 -8.6380 11.8698 25 1 9.0552 -7.3511 9.9439 26 6 6.6201 -5.1492 4.5932 27 1 5.7512 -5.5371 5.1249 28 6 7.5859 -6.2964 4.2899 29 6 6.1686 -4.5027 3.2817 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 4.0200 -0.5873 0.7125 38 1 3.1809 -2.0707 0.1987 39 1 5.4044 -2.7394 1.5635 40 1 6.7972 -1.9275 3.9800 41 1 5.2456 -1.5301 4.7573 42 1 6.9098 -2.3371 6.4189 43 1 5.5215 -3.4445 6.3019 44 1 8.6135 -5.5023 6.3455 45 1 8.3322 -3.9943 7.2483 46 1 7.9725 -6.0985 8.8939 47 1 5.6121 -8.3891 11.9843 48 1 7.9070 -6.7576 5.2239 49 1 7.0841 -7.0399 3.6707 50 1 8.4552 -5.9086 3.7585 51 1 5.6527 -5.2427 2.6698 52 1 7.0384 -4.1269 2.7429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570432260.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:32 Heat of formation + Delta-G solvation = -141.342899 kcal Electronic energy + Delta-G solvation = -30638.141405 eV Core-core repulsion = 26443.624147 eV Total energy + Delta-G solvation = -4194.517258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53539 -40.77959 -39.33463 -38.69817 -36.37875 -35.71950 -33.83685 -33.75910 -33.33939 -32.86762 -29.53581 -28.27477 -27.95149 -27.83164 -26.00881 -23.94411 -22.81278 -22.24691 -21.55187 -21.36190 -21.02761 -19.92707 -18.31412 -18.05818 -17.69870 -17.12678 -16.93134 -16.71125 -16.62710 -16.35265 -16.02814 -15.65202 -15.47775 -15.33908 -14.98771 -14.65603 -14.55698 -14.43277 -14.11582 -13.88914 -13.74793 -13.49451 -13.16185 -13.07202 -13.01096 -12.97499 -12.88370 -12.76098 -12.59806 -12.44171 -12.36071 -12.11557 -11.99734 -11.82366 -11.77403 -11.64407 -11.48459 -11.32841 -11.01501 -10.81088 -10.63764 -10.23392 -10.10971 -9.01708 -8.44130 -6.04762 1.28050 1.33608 1.42813 1.56291 1.79510 1.91306 2.20882 2.92097 2.95850 3.01907 3.12767 3.65019 3.77976 3.83257 4.01735 4.04635 4.10211 4.15816 4.19534 4.22852 4.28656 4.33611 4.42680 4.49042 4.52974 4.56698 4.61955 4.74789 4.75846 4.81221 4.85040 4.91328 4.91474 4.93497 4.99940 5.04373 5.08085 5.22763 5.27291 5.28620 5.33240 5.44681 5.50845 5.53256 5.90774 6.02100 6.12353 6.18275 6.55690 6.59456 6.86550 7.27008 7.37032 7.94686 8.73694 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002047 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.334096 B =13674.110002 C =14309.779454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.399 6.399 5 C 0.050 3.950 6 C 0.502 3.498 7 O -0.582 6.582 8 N -0.703 5.703 9 C 0.150 3.850 10 H 0.036 0.964 11 C -0.107 4.107 12 C 0.045 3.955 13 N -0.487 5.487 14 C 0.042 3.958 15 C 0.417 3.583 16 O -0.613 6.613 17 N -0.589 5.589 18 C -0.327 4.327 19 H 0.050 0.950 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.275 1.275 25 H -0.228 1.228 26 C 0.053 3.947 27 H 0.040 0.960 28 C -0.137 4.137 29 C -0.097 4.097 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.422 0.578 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.017 0.983 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.041 0.959 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.180 14.762 -27.696 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.319 6.319 5 C -0.030 4.030 6 C 0.289 3.711 7 O -0.461 6.461 8 N -0.357 5.357 9 C 0.044 3.956 10 H 0.054 0.946 11 C -0.146 4.146 12 C -0.084 4.084 13 N -0.210 5.210 14 C -0.090 4.090 15 C 0.205 3.795 16 O -0.499 6.499 17 N -0.230 5.230 18 C -0.457 4.457 19 H 0.068 0.932 20 C -0.216 4.216 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.151 1.151 26 C -0.056 4.056 27 H 0.058 0.942 28 C -0.194 4.194 29 C -0.135 4.135 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.260 0.740 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.035 0.965 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.060 0.940 49 H 0.082 0.918 50 H 0.106 0.894 51 H 0.097 0.903 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.106 14.927 -27.248 31.871 hybrid contribution -0.475 -0.851 1.512 1.799 sum 6.632 14.076 -25.736 30.074 Atomic orbital electron populations 1.21909 0.93517 1.02515 1.02986 1.22423 0.95383 0.93079 0.87601 1.22305 1.01912 0.96014 1.02882 1.88062 1.35845 1.70431 1.37544 1.22370 0.88345 0.98370 0.93875 1.21154 0.80898 0.78588 0.90410 1.90757 1.53717 1.61408 1.40232 1.45741 1.21935 1.52951 1.15092 1.20813 0.96670 0.93163 0.84905 0.94555 1.21776 1.00228 0.97144 0.95405 1.22128 0.95503 0.93470 0.97306 1.62617 1.34098 1.09357 1.14890 1.22376 0.94920 1.00433 0.91255 1.22403 0.91679 0.82769 0.82672 1.90489 1.24792 1.64699 1.69881 1.42244 1.09342 1.49661 1.21749 1.18974 0.90514 1.31703 1.04489 0.93195 1.26185 1.04375 0.95367 0.95693 1.69821 1.35546 1.35716 1.16540 0.85341 0.76917 0.79101 0.80008 1.18282 1.20025 1.15069 1.21922 0.97317 0.92668 0.93673 0.94188 1.21810 0.99705 0.96541 1.01361 1.21760 0.99177 0.95881 0.96727 0.93373 0.88618 0.92708 0.89401 0.91765 0.89445 0.93483 0.87080 0.87050 0.74011 0.88357 0.93418 0.89920 0.96462 0.85576 0.86341 0.77499 0.91185 0.94014 0.91817 0.89402 0.90295 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.56 71.98 0.69 -1.40 16 2 C 0.07 0.99 3.34 30.60 0.10 1.09 16 3 C -0.17 -1.94 9.53 71.98 0.69 -1.26 16 4 O -0.40 -9.00 9.52 -129.94 -1.24 -10.23 16 5 C 0.05 0.77 6.23 71.24 0.44 1.21 16 6 C 0.50 12.72 7.87 87.66 0.69 13.41 16 7 O -0.58 -22.86 16.17 16.00 0.26 -22.60 16 8 N -0.70 -13.58 5.08 -442.14 -2.25 -15.82 16 9 C 0.15 4.03 2.52 45.07 0.11 4.14 16 10 H 0.04 1.39 7.58 -2.38 -0.02 1.37 16 11 C -0.11 -2.90 5.67 30.65 0.17 -2.72 16 12 C 0.04 1.45 5.09 86.32 0.44 1.89 16 13 N -0.49 -14.10 4.69 -875.67 -4.11 -18.21 16 14 C 0.04 1.27 5.30 85.56 0.45 1.72 16 15 C 0.42 18.58 7.04 87.66 0.62 19.20 16 16 O -0.61 -33.35 11.20 -3.07 -0.03 -33.39 16 17 N -0.59 -27.84 5.09 -306.99 -1.56 -29.40 16 18 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 19 H 0.05 3.57 7.39 -2.91 -0.02 3.55 16 20 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 21 N -0.94 -57.51 13.96 21.66 0.30 -57.20 16 22 Si 0.97 39.19 27.74 68.60 1.90 41.10 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 24 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 26 C 0.05 1.58 1.95 44.93 0.09 1.67 16 27 H 0.04 1.69 5.36 -2.39 -0.01 1.68 16 28 C -0.14 -3.32 8.76 71.98 0.63 -2.69 16 29 C -0.10 -2.15 4.84 30.64 0.15 -2.00 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.71 7.79 -2.39 -0.02 0.69 16 34 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.96 7.87 -2.38 -0.02 0.94 16 38 H 0.11 0.98 8.08 -2.39 -0.02 0.96 16 39 H 0.42 4.00 8.60 -92.71 -0.80 3.20 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 2.40 8.06 -2.39 -0.02 2.38 16 43 H 0.02 0.75 6.00 -2.39 -0.01 0.73 16 44 H 0.13 3.11 6.33 -2.38 -0.02 3.10 16 45 H 0.12 2.97 8.06 -2.39 -0.02 2.95 16 46 H 0.39 15.21 5.76 -92.71 -0.53 14.68 16 47 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 48 H 0.04 1.14 6.24 -2.39 -0.01 1.13 16 49 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 51 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -90.52 406.43 -0.60 -91.12 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: -0.46 Total: 39.51 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.60 Total: 15.14 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -7.62 Total: -120.64 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -1.01 Total: -66.22 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.10 kcal Total: -90.52 -0.60 -91.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570432260.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.222 kcal (2) G-P(sol) polarization free energy of solvation -90.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds