Wall clock time and date at job start Wed Apr 1 2020 00:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 O 1.42899 * 109.47137 * 119.99648 * 2 1 3 5 5 C 1.42899 * 114.00256 * 149.99700 * 4 2 1 6 6 C 1.50695 * 109.47386 * 179.97438 * 5 4 2 7 7 O 1.21289 * 120.00031 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00435 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00287 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.52287 * 34.87438 * 9 8 6 11 11 C 1.53121 * 109.52398 * 274.68087 * 9 8 6 12 12 C 1.53034 * 109.27880 * 297.74972 * 11 9 8 13 13 N 1.46841 * 109.52458 * 300.82135 * 12 11 9 14 14 C 1.46905 * 111.00224 * 185.83845 * 13 12 11 15 15 C 1.50704 * 109.46913 * 300.41101 * 14 13 12 16 16 O 1.21289 * 120.00040 * 354.33743 * 15 14 13 17 17 N 1.34774 * 119.99364 * 174.33160 * 15 14 13 18 18 C 1.37106 * 119.99611 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99515 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00194 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99676 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47435 * 270.00265 * 22 20 18 24 24 H 1.48502 * 109.46958 * 150.00305 * 22 20 18 25 25 H 1.48505 * 109.47025 * 30.00324 * 22 20 18 26 26 C 1.46845 * 111.20232 * 61.74031 * 13 12 11 27 27 H 1.09003 * 109.46086 * 58.26219 * 26 13 12 28 28 C 1.52998 * 109.46510 * 178.24295 * 26 13 12 29 29 C 1.53045 * 109.52195 * 298.26098 * 26 13 12 30 30 H 1.08997 * 109.47172 * 300.00463 * 1 2 3 31 31 H 1.09002 * 109.46851 * 60.00072 * 1 2 3 32 32 H 1.08997 * 109.47556 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47172 * 239.99537 * 2 1 3 34 34 H 1.09007 * 109.46768 * 299.99485 * 3 2 1 35 35 H 1.08997 * 109.47407 * 59.99681 * 3 2 1 36 36 H 1.09006 * 109.47013 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.46832 * 60.00414 * 5 4 2 38 38 H 1.08996 * 109.47283 * 300.00545 * 5 4 2 39 39 H 0.97002 * 119.99954 * 0.02562 * 8 6 5 40 40 H 1.08999 * 109.49864 * 57.69034 * 11 9 8 41 41 H 1.08996 * 109.50404 * 177.76941 * 11 9 8 42 42 H 1.09004 * 109.46646 * 180.79999 * 12 11 9 43 43 H 1.09008 * 109.46075 * 60.83559 * 12 11 9 44 44 H 1.09000 * 109.47033 * 180.41416 * 14 13 12 45 45 H 1.08994 * 109.46967 * 60.41075 * 14 13 12 46 46 H 0.96993 * 120.00749 * 0.02562 * 17 15 14 47 47 H 0.96999 * 120.00572 * 0.02562 * 21 20 18 48 48 H 1.09001 * 109.47051 * 53.15663 * 28 26 13 49 49 H 1.09001 * 109.46771 * 173.15167 * 28 26 13 50 50 H 1.08996 * 109.47416 * 293.15130 * 28 26 13 51 51 H 1.08998 * 109.50392 * 179.11861 * 29 26 13 52 52 H 1.09001 * 109.50222 * 299.23336 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9887 6 6 3.6698 -1.9977 2.2750 7 8 2.9496 -1.9274 3.2484 8 7 4.8313 -2.6779 2.3439 9 6 5.2236 -3.3328 3.5942 10 1 4.3361 -3.7116 4.1011 11 6 5.9392 -2.3244 4.4975 12 6 7.2156 -1.8423 3.8045 13 7 8.0903 -2.9902 3.5332 14 6 9.3841 -2.5504 2.9941 15 6 9.1618 -1.7883 1.7131 16 8 8.0488 -1.7149 1.2365 17 7 10.1996 -1.1883 1.0973 18 6 9.9972 -0.4945 -0.0679 19 1 9.0061 -0.4286 -0.4918 20 6 11.0670 0.1246 -0.7026 21 7 12.2729 0.0447 -0.1864 22 14 10.7914 1.0692 -2.2904 23 1 10.9571 0.1526 -3.4469 24 1 11.7803 2.1728 -2.3878 25 1 9.4177 1.6332 -2.2987 26 6 7.4425 -3.9495 2.6296 27 1 7.1821 -3.4504 1.6962 28 6 8.4026 -5.1049 2.3394 29 6 6.1727 -4.4946 3.2875 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.1301 1.4424 -0.0005 37 1 4.0199 -0.5874 0.7126 38 1 3.1808 -2.0707 0.1988 39 1 5.4075 -2.7338 1.5656 40 1 5.2833 -1.4742 4.6846 41 1 6.1958 -2.8012 5.4434 42 1 7.7349 -1.1348 4.4511 43 1 6.9565 -1.3531 2.8655 44 1 10.0096 -3.4207 2.7952 45 1 9.8795 -1.9051 3.7195 46 1 11.0896 -1.2472 1.4782 47 1 12.4162 -0.4467 0.6375 48 1 8.7583 -5.5265 3.2795 49 1 7.8825 -5.8749 1.7696 50 1 9.2507 -4.7364 1.7624 51 1 5.6838 -5.1948 2.6102 52 1 6.4337 -5.0058 4.2141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570432262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:39 Heat of formation + Delta-G solvation = -141.831357 kcal Electronic energy + Delta-G solvation = -31766.464943 eV Core-core repulsion = 27571.926505 eV Total energy + Delta-G solvation = -4194.538439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70204 -40.68430 -39.40943 -38.68891 -36.49051 -35.66220 -33.82582 -33.36471 -33.20852 -32.70280 -29.38539 -28.33006 -27.92374 -27.84392 -26.15285 -24.06790 -22.74162 -22.31328 -22.16134 -21.39129 -20.17316 -19.80501 -18.41204 -18.15348 -17.83055 -17.17714 -17.04881 -16.64992 -16.50861 -16.27373 -16.05055 -15.79606 -15.51642 -15.46175 -15.22359 -14.59920 -14.44767 -14.43718 -13.92274 -13.64897 -13.53385 -13.34893 -13.28938 -13.09974 -13.01430 -12.94941 -12.86389 -12.77329 -12.63155 -12.45178 -12.39873 -11.97254 -11.93534 -11.81991 -11.70909 -11.65692 -11.32904 -11.16972 -10.94067 -10.89031 -10.72718 -10.10748 -10.05128 -8.98063 -8.89050 -6.04458 1.50020 1.50282 1.53325 1.78621 1.81645 2.00412 2.41547 2.90121 2.97753 3.10203 3.18510 3.62078 3.76476 3.79857 3.95330 3.98498 4.04645 4.10899 4.14129 4.20195 4.22973 4.24411 4.38535 4.40399 4.54926 4.56469 4.63704 4.68771 4.74640 4.77794 4.79077 4.83781 4.90024 4.91376 4.93058 5.03628 5.08091 5.20461 5.22651 5.24493 5.28237 5.44532 5.52148 5.62979 5.96160 6.00068 6.08125 6.15469 6.46892 6.57842 6.76754 7.14493 7.46859 7.92934 8.56612 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007815 B = 0.003803 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3582.030803 B = 7361.565401 C =10281.504299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 C -0.176 4.176 4 O -0.386 6.386 5 C 0.044 3.956 6 C 0.513 3.487 7 O -0.569 6.569 8 N -0.710 5.710 9 C 0.146 3.854 10 H 0.085 0.915 11 C -0.115 4.115 12 C 0.043 3.957 13 N -0.494 5.494 14 C 0.044 3.956 15 C 0.418 3.582 16 O -0.606 6.606 17 N -0.586 5.586 18 C -0.403 4.403 19 H 0.076 0.924 20 C -0.044 4.044 21 N -0.920 5.920 22 Si 1.132 2.868 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.277 1.277 26 C 0.059 3.941 27 H 0.053 0.947 28 C -0.140 4.140 29 C -0.105 4.105 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.408 0.592 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.381 0.619 47 H 0.260 0.740 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.086 0.914 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.671 -7.137 2.552 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 C -0.233 4.233 4 O -0.305 6.305 5 C -0.035 4.035 6 C 0.300 3.700 7 O -0.448 6.448 8 N -0.363 5.363 9 C 0.042 3.958 10 H 0.103 0.897 11 C -0.153 4.153 12 C -0.086 4.086 13 N -0.217 5.217 14 C -0.088 4.088 15 C 0.205 3.795 16 O -0.492 6.492 17 N -0.225 5.225 18 C -0.533 4.533 19 H 0.094 0.906 20 C -0.242 4.242 21 N -0.560 5.560 22 Si 0.953 3.047 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.202 1.202 26 C -0.050 4.050 27 H 0.071 0.929 28 C -0.198 4.198 29 C -0.143 4.143 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.244 0.756 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.215 0.785 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.056 0.944 51 H 0.104 0.896 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.190 -6.396 2.387 15.747 hybrid contribution 0.369 -0.094 0.171 0.417 sum -13.821 -6.490 2.557 15.481 Atomic orbital electron populations 1.21857 0.92151 1.02913 1.03264 1.22451 0.96191 0.92649 0.87520 1.22319 1.01111 0.96635 1.03261 1.88008 1.34935 1.70255 1.37328 1.22276 0.88068 0.97849 0.95337 1.20628 0.81025 0.78439 0.89917 1.90663 1.53679 1.61331 1.39143 1.46098 1.21085 1.53311 1.15813 1.21053 0.97572 0.92857 0.84316 0.89673 1.21852 0.95007 0.99073 0.99412 1.22174 0.93749 0.92774 0.99857 1.62549 1.02700 1.13506 1.42958 1.22215 0.94492 1.00076 0.92046 1.22027 0.84803 0.83822 0.88855 1.90349 1.24196 1.65773 1.68923 1.42226 1.09675 1.47548 1.23042 1.20514 0.98060 1.32244 1.02434 0.90567 1.27703 0.91172 0.98415 1.06918 1.70938 1.22381 1.41385 1.21301 0.82626 0.75908 0.75468 0.70742 1.19624 1.20266 1.20203 1.21896 0.94777 0.93145 0.95137 0.92916 1.21838 0.98559 0.97210 1.02183 1.21880 0.93223 0.96049 1.03101 0.92666 0.88707 0.92081 0.90417 0.89270 0.92648 0.93441 0.90025 0.87778 0.75556 0.93138 0.88919 0.92133 0.93774 0.86837 0.88208 0.78493 0.92946 0.90569 0.90864 0.94404 0.89560 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.56 71.98 0.69 -1.74 16 2 C 0.07 1.41 3.34 30.59 0.10 1.52 16 3 C -0.18 -3.47 9.53 71.98 0.69 -2.79 16 4 O -0.39 -10.99 9.52 -129.94 -1.24 -12.22 16 5 C 0.04 1.16 6.23 71.23 0.44 1.60 16 6 C 0.51 15.98 7.88 87.66 0.69 16.67 16 7 O -0.57 -21.84 16.16 15.98 0.26 -21.58 16 8 N -0.71 -19.77 4.34 -442.16 -1.92 -21.69 16 9 C 0.15 3.74 2.81 45.07 0.13 3.87 16 10 H 0.09 2.24 7.58 -2.39 -0.02 2.22 16 11 C -0.11 -3.14 5.76 30.65 0.18 -2.96 16 12 C 0.04 1.34 4.85 86.33 0.42 1.76 16 13 N -0.49 -14.15 4.69 -875.63 -4.11 -18.26 16 14 C 0.04 1.36 5.45 85.56 0.47 1.83 16 15 C 0.42 17.58 7.18 87.66 0.63 18.21 16 16 O -0.61 -27.92 11.22 -3.06 -0.03 -27.96 16 17 N -0.59 -27.77 5.28 -306.98 -1.62 -29.39 16 18 C -0.40 -21.66 9.68 84.04 0.81 -20.85 16 19 H 0.08 4.36 7.16 -2.91 -0.02 4.34 16 20 C -0.04 -2.29 5.50 84.93 0.47 -1.82 16 21 N -0.92 -50.14 13.68 21.66 0.30 -49.84 16 22 Si 1.13 46.93 29.92 68.60 2.05 48.98 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 26 C 0.06 1.56 1.90 44.94 0.09 1.64 16 27 H 0.05 1.75 4.18 -2.39 -0.01 1.74 16 28 C -0.14 -3.22 8.52 71.98 0.61 -2.61 16 29 C -0.10 -2.23 5.03 30.65 0.15 -2.08 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.32 7.79 -2.39 -0.02 1.30 16 34 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.04 7.87 -2.38 -0.02 1.02 16 37 H 0.08 2.12 7.87 -2.39 -0.02 2.10 16 38 H 0.10 2.10 8.08 -2.39 -0.02 2.08 16 39 H 0.41 11.54 7.01 -92.71 -0.65 10.89 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.04 1.70 5.22 -2.38 -0.01 1.68 16 44 H 0.11 3.16 6.10 -2.39 -0.01 3.15 16 45 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.38 17.00 6.73 -92.71 -0.62 16.38 16 47 H 0.26 13.67 6.78 -92.71 -0.63 13.05 16 48 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.04 1.00 6.65 -2.39 -0.02 0.98 16 51 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -69.25 404.19 0.04 -69.21 By element: Atomic # 1 Polarization: 50.71 SS G_CDS: -0.20 Total: 50.51 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 6.56 Total: 12.24 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -7.36 Total: -119.19 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -1.01 Total: -61.76 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.05 Total: 48.98 kcal Total: -69.25 0.04 -69.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570432262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.626 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds