Wall clock time and date at job start Wed Apr 1 2020 00:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46822 * 2 1 4 4 O 1.42895 * 109.47362 * 120.00154 * 2 1 3 5 5 C 1.42899 * 114.00147 * 150.00214 * 4 2 1 6 6 C 1.50699 * 109.47485 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99848 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00236 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99846 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.57271 * 324.84504 * 9 8 6 11 11 C 1.53121 * 109.52067 * 85.00650 * 9 8 6 12 12 C 1.53036 * 109.27799 * 177.55939 * 11 9 8 13 13 N 1.46850 * 109.52169 * 300.82174 * 12 11 9 14 14 C 1.46901 * 110.99833 * 185.84205 * 13 12 11 15 15 C 1.50699 * 109.47105 * 75.57496 * 14 13 12 16 16 O 1.21290 * 120.00498 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99685 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99906 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99987 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99836 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99883 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00097 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46925 * 270.00398 * 22 20 18 24 24 H 1.48497 * 109.47025 * 150.00545 * 22 20 18 25 25 H 1.48497 * 109.47128 * 30.00108 * 22 20 18 26 26 C 1.46848 * 111.19987 * 61.73741 * 13 12 11 27 27 H 1.08999 * 109.45967 * 58.27726 * 26 13 12 28 28 C 1.53003 * 109.45941 * 178.24253 * 26 13 12 29 29 C 1.53029 * 109.52770 * 298.25972 * 26 13 12 30 30 H 1.08999 * 109.47116 * 299.99902 * 1 2 3 31 31 H 1.09000 * 109.47456 * 60.00124 * 1 2 3 32 32 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46974 * 240.00566 * 2 1 3 34 34 H 1.08999 * 109.47195 * 60.00147 * 3 2 1 35 35 H 1.09005 * 109.47174 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47521 * 300.00250 * 3 2 1 37 37 H 1.09004 * 109.47198 * 59.99704 * 5 4 2 38 38 H 1.09004 * 109.47017 * 300.00033 * 5 4 2 39 39 H 0.96993 * 119.99854 * 0.02562 * 8 6 5 40 40 H 1.08996 * 109.50085 * 57.61475 * 11 9 8 41 41 H 1.08997 * 109.53062 * 297.51944 * 11 9 8 42 42 H 1.08992 * 109.46349 * 180.80183 * 12 11 9 43 43 H 1.09000 * 109.46194 * 60.82897 * 12 11 9 44 44 H 1.08999 * 109.46996 * 315.57009 * 14 13 12 45 45 H 1.09002 * 109.46668 * 195.57037 * 14 13 12 46 46 H 0.97005 * 119.99961 * 0.02562 * 17 15 14 47 47 H 0.97002 * 120.00253 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.46910 * 52.24797 * 28 26 13 49 49 H 1.09004 * 109.46972 * 172.24562 * 28 26 13 50 50 H 1.09002 * 109.47150 * 292.24448 * 28 26 13 51 51 H 1.09000 * 109.50349 * 299.24254 * 29 26 13 52 52 H 1.08992 * 109.53886 * 179.14026 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2660 -1.3244 0.9885 6 6 3.6700 -1.9978 2.2748 7 8 2.9498 -1.9277 3.2481 8 7 4.8311 -2.6787 2.3432 9 6 5.2235 -3.3338 3.5935 10 1 4.8948 -2.7312 4.4402 11 6 4.5769 -4.7196 3.6699 12 6 5.0387 -5.4229 4.9482 13 7 6.5020 -5.5455 4.9396 14 6 6.9707 -6.3378 6.0844 15 6 6.6958 -7.7977 5.8311 16 8 6.1617 -8.1442 4.7987 17 7 7.0427 -8.7184 6.7523 18 6 6.7922 -10.0465 6.5221 19 1 6.3166 -10.3550 5.6029 20 6 7.1494 -10.9957 7.4721 21 7 6.9097 -12.2687 7.2513 22 14 7.9714 -10.4621 9.0624 23 1 9.4450 -10.4533 8.8791 24 1 7.6132 -11.4108 10.1472 25 1 7.5095 -9.0982 9.4249 26 6 7.1454 -4.2257 4.9141 27 1 6.8251 -3.6488 5.7817 28 6 8.6652 -4.3988 4.9501 29 6 6.7465 -3.4868 3.6348 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6765 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8899 37 1 4.0200 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1985 39 1 5.4068 -2.7351 1.5646 40 1 4.8750 -5.3085 2.8025 41 1 3.4920 -4.6153 3.6835 42 1 4.5913 -6.4155 4.9986 43 1 4.7283 -4.8403 5.8156 44 1 6.4457 -6.0202 6.9853 45 1 8.0422 -6.1874 6.2160 46 1 7.4689 -8.4413 7.5785 47 1 7.1594 -12.9314 7.9142 48 1 8.9710 -5.0884 4.1634 49 1 9.1447 -3.4326 4.7929 50 1 8.9625 -4.7985 5.9196 51 1 7.0787 -4.0564 2.7669 52 1 7.2117 -2.5012 3.6231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570432263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:44 Heat of formation + Delta-G solvation = -113.212269 kcal Electronic energy + Delta-G solvation = -30124.257464 eV Core-core repulsion = 25930.960042 eV Total energy + Delta-G solvation = -4193.297422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36623 -39.34994 -38.37969 -37.66933 -35.18347 -33.89564 -33.20005 -32.33529 -31.93883 -31.53942 -28.54859 -27.65290 -27.09297 -26.74491 -24.29619 -22.88025 -21.81777 -21.68997 -20.60033 -19.76241 -19.27718 -18.23627 -17.49517 -17.41149 -16.32683 -16.17688 -15.96071 -15.41000 -15.32770 -15.07664 -14.85351 -14.50147 -14.33782 -13.94211 -13.82940 -13.53827 -13.31681 -13.25054 -13.07692 -12.92805 -12.60473 -12.47186 -12.38550 -12.29479 -12.03309 -12.01430 -11.86776 -11.75823 -11.71918 -11.19997 -11.16300 -11.04435 -10.91653 -10.71270 -10.58002 -10.44891 -10.07516 -9.94290 -9.87946 -9.51115 -9.18820 -8.55552 -8.13099 -7.91347 -6.27159 -3.78136 2.40925 2.51604 3.05114 3.08976 3.17239 3.60201 3.79826 3.87369 4.13557 4.33906 4.50143 4.55930 4.61957 4.69546 4.74185 4.79307 4.82246 4.86305 4.87863 5.16391 5.17176 5.25103 5.27417 5.29852 5.35515 5.37542 5.42201 5.42572 5.50727 5.61312 5.67533 5.71314 5.74476 5.80229 5.81877 5.90618 5.98022 6.02200 6.05577 6.16964 6.22813 6.39328 6.43072 6.72007 7.19238 7.29033 7.35881 7.63381 8.02906 8.19284 8.65496 9.00253 9.47471 9.90001 10.86204 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024118 B = 0.001861 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.661932 B =15045.555948 C =15738.896120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.357 6.357 5 C 0.044 3.956 6 C 0.513 3.487 7 O -0.517 6.517 8 N -0.724 5.724 9 C 0.146 3.854 10 H 0.084 0.916 11 C -0.122 4.122 12 C 0.063 3.937 13 N -0.509 5.509 14 C 0.036 3.964 15 C 0.455 3.545 16 O -0.557 6.557 17 N -0.595 5.595 18 C -0.302 4.302 19 H 0.119 0.881 20 C 0.040 3.960 21 N -0.884 5.884 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.085 3.915 27 H 0.040 0.960 28 C -0.150 4.150 29 C -0.115 4.115 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.400 0.600 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.027 0.973 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.369 0.631 47 H 0.272 0.728 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.080 0.920 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 27.383 -12.230 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.392 6.392 8 N -0.377 5.377 9 C 0.042 3.958 10 H 0.102 0.898 11 C -0.161 4.161 12 C -0.065 4.065 13 N -0.235 5.235 14 C -0.095 4.095 15 C 0.240 3.760 16 O -0.438 6.438 17 N -0.235 5.235 18 C -0.431 4.431 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.524 5.524 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.025 4.025 27 H 0.058 0.942 28 C -0.207 4.207 29 C -0.153 4.153 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.113 0.887 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.099 0.901 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.072 26.742 -12.408 29.640 hybrid contribution 0.930 0.581 1.461 1.826 sum -2.143 27.323 -10.947 29.513 Atomic orbital electron populations 1.21856 0.93201 1.03042 1.02642 1.22181 0.95450 0.92442 0.87838 1.22317 1.01446 0.96762 1.02842 1.88079 1.34564 1.69679 1.35234 1.22239 0.88267 0.97126 0.95985 1.20246 0.81379 0.78895 0.89737 1.90748 1.51293 1.59629 1.37489 1.45973 1.22153 1.54223 1.15343 1.21100 0.94552 0.93789 0.86368 0.89759 1.21929 1.00199 0.94522 0.99424 1.22066 0.87263 1.01612 0.95594 1.61520 1.06233 1.13342 1.42356 1.22010 1.01663 0.93875 0.91990 1.19694 0.84516 0.86311 0.85446 1.90549 1.45395 1.81053 1.26761 1.42224 1.55993 1.07410 1.17887 1.19418 1.37753 0.79383 1.06541 0.86333 1.25025 0.97939 0.95082 0.98174 1.69622 1.46977 1.00084 1.35724 0.86680 0.80318 0.78651 0.83774 1.19678 1.20270 1.19559 1.21526 0.95049 0.89646 0.96231 0.94250 1.21951 0.93979 1.01963 1.02831 1.21877 0.93818 1.00188 0.99420 0.91564 0.91124 0.91772 0.92009 0.91548 0.92536 0.91487 0.90484 0.90214 0.76634 0.90471 0.91243 0.88735 0.95492 0.93227 0.88692 0.79833 0.91705 0.91118 0.92232 0.92206 0.90138 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.55 3.34 -26.73 -0.09 0.46 16 3 C -0.18 -1.01 9.53 37.16 0.35 -0.66 16 4 O -0.36 -3.76 9.52 -55.14 -0.52 -4.29 16 5 C 0.04 0.35 6.23 36.01 0.22 0.57 16 6 C 0.51 5.80 7.87 -10.99 -0.09 5.71 16 7 O -0.52 -8.42 16.17 -14.35 -0.23 -8.66 16 8 N -0.72 -6.59 5.08 -53.68 -0.27 -6.87 16 9 C 0.15 1.63 2.52 -67.80 -0.17 1.46 16 10 H 0.08 1.09 7.59 -51.93 -0.39 0.69 16 11 C -0.12 -1.67 5.67 -26.65 -0.15 -1.82 16 12 C 0.06 0.99 5.11 -3.83 -0.02 0.97 16 13 N -0.51 -7.89 4.05 -228.13 -0.92 -8.81 16 14 C 0.04 0.60 5.31 -4.98 -0.03 0.57 16 15 C 0.45 10.31 7.49 -10.98 -0.08 10.22 16 16 O -0.56 -14.82 14.74 5.55 0.08 -14.74 16 17 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 18 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 22 Si 0.88 19.51 27.74 -169.99 -4.71 14.79 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 26 C 0.08 0.99 2.44 -67.72 -0.17 0.82 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 C -0.15 -1.54 8.59 37.16 0.32 -1.23 16 29 C -0.11 -1.12 4.84 -26.65 -0.13 -1.24 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 38 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 39 H 0.40 2.35 8.60 -40.82 -0.35 2.00 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.80 6.69 -51.93 -0.35 1.45 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 45 H 0.10 1.37 5.42 -51.93 -0.28 1.09 16 46 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 50 H 0.06 0.61 6.38 -51.93 -0.33 0.28 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 412.84 15.07 6.22 6.22 Total: -1.00 -36.24 412.84 -8.61 -44.85 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -9.05 Total: 9.48 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 0.08 Total: 7.51 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.48 Total: -55.16 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.68 Total: -27.68 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.24 -8.61 -44.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570432263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.362 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds