Wall clock time and date at job start Wed Apr 1 2020 00:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46822 * 2 1 4 4 O 1.42895 * 109.47362 * 120.00154 * 2 1 3 5 5 C 1.42899 * 114.00147 * 150.00214 * 4 2 1 6 6 C 1.50699 * 109.47485 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99848 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00236 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99846 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.57271 * 324.84504 * 9 8 6 11 11 C 1.53121 * 109.52067 * 85.00650 * 9 8 6 12 12 C 1.53036 * 109.27799 * 177.55939 * 11 9 8 13 13 N 1.46850 * 109.52169 * 300.82174 * 12 11 9 14 14 C 1.46901 * 110.99833 * 185.84205 * 13 12 11 15 15 C 1.50699 * 109.47105 * 75.57496 * 14 13 12 16 16 O 1.21290 * 120.00498 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99685 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99906 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99987 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99836 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99883 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00097 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46925 * 270.00398 * 22 20 18 24 24 H 1.48497 * 109.47025 * 150.00545 * 22 20 18 25 25 H 1.48497 * 109.47128 * 30.00108 * 22 20 18 26 26 C 1.46848 * 111.19987 * 61.73741 * 13 12 11 27 27 H 1.08999 * 109.45967 * 58.27726 * 26 13 12 28 28 C 1.53003 * 109.45941 * 178.24253 * 26 13 12 29 29 C 1.53029 * 109.52770 * 298.25972 * 26 13 12 30 30 H 1.08999 * 109.47116 * 299.99902 * 1 2 3 31 31 H 1.09000 * 109.47456 * 60.00124 * 1 2 3 32 32 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46974 * 240.00566 * 2 1 3 34 34 H 1.08999 * 109.47195 * 60.00147 * 3 2 1 35 35 H 1.09005 * 109.47174 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47521 * 300.00250 * 3 2 1 37 37 H 1.09004 * 109.47198 * 59.99704 * 5 4 2 38 38 H 1.09004 * 109.47017 * 300.00033 * 5 4 2 39 39 H 0.96993 * 119.99854 * 0.02562 * 8 6 5 40 40 H 1.08996 * 109.50085 * 57.61475 * 11 9 8 41 41 H 1.08997 * 109.53062 * 297.51944 * 11 9 8 42 42 H 1.08992 * 109.46349 * 180.80183 * 12 11 9 43 43 H 1.09000 * 109.46194 * 60.82897 * 12 11 9 44 44 H 1.08999 * 109.46996 * 315.57009 * 14 13 12 45 45 H 1.09002 * 109.46668 * 195.57037 * 14 13 12 46 46 H 0.97005 * 119.99961 * 0.02562 * 17 15 14 47 47 H 0.97002 * 120.00253 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.46910 * 52.24797 * 28 26 13 49 49 H 1.09004 * 109.46972 * 172.24562 * 28 26 13 50 50 H 1.09002 * 109.47150 * 292.24448 * 28 26 13 51 51 H 1.09000 * 109.50349 * 299.24254 * 29 26 13 52 52 H 1.08992 * 109.53886 * 179.14026 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2660 -1.3244 0.9885 6 6 3.6700 -1.9978 2.2748 7 8 2.9498 -1.9277 3.2481 8 7 4.8311 -2.6787 2.3432 9 6 5.2235 -3.3338 3.5935 10 1 4.8948 -2.7312 4.4402 11 6 4.5769 -4.7196 3.6699 12 6 5.0387 -5.4229 4.9482 13 7 6.5020 -5.5455 4.9396 14 6 6.9707 -6.3378 6.0844 15 6 6.6958 -7.7977 5.8311 16 8 6.1617 -8.1442 4.7987 17 7 7.0427 -8.7184 6.7523 18 6 6.7922 -10.0465 6.5221 19 1 6.3166 -10.3550 5.6029 20 6 7.1494 -10.9957 7.4721 21 7 6.9097 -12.2687 7.2513 22 14 7.9714 -10.4621 9.0624 23 1 9.4450 -10.4533 8.8791 24 1 7.6132 -11.4108 10.1472 25 1 7.5095 -9.0982 9.4249 26 6 7.1454 -4.2257 4.9141 27 1 6.8251 -3.6488 5.7817 28 6 8.6652 -4.3988 4.9501 29 6 6.7465 -3.4868 3.6348 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6765 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8899 37 1 4.0200 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1985 39 1 5.4068 -2.7351 1.5646 40 1 4.8750 -5.3085 2.8025 41 1 3.4920 -4.6153 3.6835 42 1 4.5913 -6.4155 4.9986 43 1 4.7283 -4.8403 5.8156 44 1 6.4457 -6.0202 6.9853 45 1 8.0422 -6.1874 6.2160 46 1 7.4689 -8.4413 7.5785 47 1 7.1594 -12.9314 7.9142 48 1 8.9710 -5.0884 4.1634 49 1 9.1447 -3.4326 4.7929 50 1 8.9625 -4.7985 5.9196 51 1 7.0787 -4.0564 2.7669 52 1 7.2117 -2.5012 3.6231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570432263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:43 Heat of formation + Delta-G solvation = -141.739001 kcal Electronic energy + Delta-G solvation = -30125.494476 eV Core-core repulsion = 25930.960042 eV Total energy + Delta-G solvation = -4194.534434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33630 -40.56174 -39.50889 -38.82417 -36.29665 -35.84422 -33.80413 -33.71420 -33.35237 -32.88064 -29.55066 -28.30198 -27.98002 -27.85058 -26.03035 -24.07120 -22.74342 -22.24459 -21.53426 -21.23651 -20.73051 -20.15499 -18.32249 -18.07563 -17.69099 -17.05362 -16.94937 -16.84335 -16.55574 -16.40087 -15.77407 -15.59531 -15.47438 -15.19571 -14.85786 -14.82074 -14.70530 -14.42280 -14.15413 -13.88172 -13.76721 -13.52821 -13.40356 -13.06796 -13.05164 -12.93426 -12.88291 -12.79785 -12.69770 -12.40766 -12.35742 -12.13194 -11.98431 -11.84779 -11.80980 -11.65456 -11.49752 -11.44743 -10.81676 -10.64105 -10.38922 -10.21527 -10.09483 -9.18638 -8.39501 -5.99740 1.30568 1.36084 1.44705 1.55890 1.80250 2.00427 2.24070 2.58669 2.99145 3.15558 3.24185 3.63408 3.77099 3.81402 3.96045 4.02083 4.04111 4.10128 4.20536 4.23601 4.28667 4.30785 4.34177 4.38849 4.43868 4.45647 4.50636 4.56896 4.75332 4.80234 4.83088 4.86186 4.91672 4.93894 5.00598 5.02040 5.04159 5.14569 5.25945 5.28815 5.33324 5.43986 5.47215 5.55351 5.92433 6.04274 6.17194 6.25987 6.57260 6.62875 6.91584 7.23857 7.43395 8.01843 8.78371 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024118 B = 0.001861 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.661932 B =15045.555948 C =15738.896120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.396 6.396 5 C 0.046 3.954 6 C 0.507 3.493 7 O -0.576 6.576 8 N -0.708 5.708 9 C 0.154 3.846 10 H 0.071 0.929 11 C -0.114 4.114 12 C 0.067 3.933 13 N -0.527 5.527 14 C 0.047 3.953 15 C 0.453 3.547 16 O -0.605 6.605 17 N -0.595 5.595 18 C -0.325 4.325 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.233 1.233 26 C 0.081 3.919 27 H 0.051 0.949 28 C -0.147 4.147 29 C -0.105 4.105 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.419 0.581 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.036 0.964 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.388 0.612 47 H 0.278 0.722 48 H 0.055 0.945 49 H 0.089 0.911 50 H 0.063 0.937 51 H 0.082 0.918 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 31.016 -11.816 33.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 C -0.230 4.230 4 O -0.315 6.315 5 C -0.033 4.033 6 C 0.294 3.706 7 O -0.454 6.454 8 N -0.361 5.361 9 C 0.049 3.951 10 H 0.089 0.911 11 C -0.153 4.153 12 C -0.062 4.062 13 N -0.253 5.253 14 C -0.084 4.084 15 C 0.241 3.759 16 O -0.488 6.488 17 N -0.238 5.238 18 C -0.455 4.455 19 H 0.072 0.928 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.157 1.157 26 C -0.027 4.027 27 H 0.069 0.931 28 C -0.204 4.204 29 C -0.143 4.143 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.257 0.743 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.146 0.854 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.107 0.893 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.397 30.411 -12.042 32.710 hybrid contribution 0.017 -0.588 1.175 1.314 sum -0.380 29.823 -10.867 31.743 Atomic orbital electron populations 1.21901 0.93449 1.02497 1.03049 1.22408 0.95422 0.93113 0.87576 1.22296 1.01885 0.95914 1.02943 1.88042 1.35764 1.70375 1.37350 1.22375 0.88395 0.98321 0.94251 1.20979 0.80953 0.78341 0.90285 1.90723 1.53084 1.61885 1.39749 1.45802 1.21922 1.52968 1.15417 1.20882 0.95593 0.91652 0.86964 0.91128 1.21805 0.99287 0.96160 0.98019 1.21897 0.87911 0.99393 0.96957 1.61459 1.05844 1.15860 1.42135 1.21934 1.03959 0.89173 0.93285 1.20962 0.82139 0.88763 0.84087 1.90530 1.46923 1.82508 1.28838 1.42052 1.56768 1.05823 1.19141 1.18988 1.39090 0.82193 1.05183 0.92796 1.26100 0.98031 0.94534 1.02786 1.69809 1.48293 1.01915 1.37744 0.85366 0.79419 0.79920 0.76817 1.17918 1.20186 1.15669 1.21730 0.95840 0.87543 0.97632 0.93140 1.21948 0.92620 1.03359 1.02488 1.21854 0.92216 1.01674 0.98592 0.93064 0.88800 0.92786 0.89822 0.93176 0.91793 0.89635 0.87151 0.87685 0.74347 0.91547 0.93043 0.93190 0.94619 0.90918 0.85432 0.77638 0.91247 0.92584 0.89251 0.91845 0.89949 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.56 71.98 0.69 -1.19 16 2 C 0.07 0.89 3.34 30.59 0.10 0.99 16 3 C -0.17 -1.66 9.53 71.98 0.69 -0.97 16 4 O -0.40 -8.03 9.52 -129.94 -1.24 -9.26 16 5 C 0.05 0.63 6.23 71.24 0.44 1.08 16 6 C 0.51 11.03 7.87 87.66 0.69 11.72 16 7 O -0.58 -19.17 16.17 16.00 0.26 -18.92 16 8 N -0.71 -11.62 5.08 -442.14 -2.25 -13.87 16 9 C 0.15 3.25 2.52 45.07 0.11 3.36 16 10 H 0.07 1.75 7.59 -2.39 -0.02 1.73 16 11 C -0.11 -3.21 5.67 30.65 0.17 -3.03 16 12 C 0.07 2.16 5.11 86.32 0.44 2.60 16 13 N -0.53 -15.76 4.05 -875.66 -3.55 -19.31 16 14 C 0.05 1.49 5.31 85.56 0.45 1.95 16 15 C 0.45 20.85 7.49 87.66 0.66 21.50 16 16 O -0.60 -34.02 14.74 -3.06 -0.05 -34.06 16 17 N -0.60 -28.56 5.09 -306.98 -1.56 -30.13 16 18 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 19 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 20 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 21 N -0.94 -57.23 13.96 21.66 0.30 -56.93 16 22 Si 0.96 39.32 27.74 68.60 1.90 41.22 16 23 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 26 C 0.08 1.63 2.44 44.94 0.11 1.74 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 C -0.15 -2.43 8.59 71.98 0.62 -1.81 16 29 C -0.11 -1.71 4.84 30.65 0.15 -1.57 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.65 7.79 -2.38 -0.02 0.63 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.51 7.87 -2.38 -0.02 0.49 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 0.78 7.87 -2.39 -0.02 0.76 16 38 H 0.11 0.91 8.09 -2.39 -0.02 0.89 16 39 H 0.42 3.68 8.60 -92.71 -0.80 2.89 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 2.03 6.69 -2.39 -0.02 2.02 16 43 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 2.01 8.00 -2.39 -0.02 1.99 16 45 H 0.13 3.23 5.42 -2.39 -0.01 3.22 16 46 H 0.39 15.43 5.76 -92.70 -0.53 14.90 16 47 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 0.98 8.13 -2.39 -0.02 0.96 16 50 H 0.06 1.01 6.38 -2.39 -0.02 0.99 16 51 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 52 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -88.51 412.84 0.00 -88.51 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.47 Total: 35.32 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.65 Total: 17.43 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -7.06 Total: -120.24 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -1.02 Total: -62.24 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.22 kcal Total: -88.51 0.00 -88.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570432263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.229 kcal (2) G-P(sol) polarization free energy of solvation -88.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds