Wall clock time and date at job start Wed Apr 1 2020 00:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46980 * 2 1 4 4 O 1.21286 * 119.99867 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00054 * 179.97438 * 3 2 1 6 6 C 1.47025 * 125.65008 * 0.02866 * 5 3 2 7 7 C 1.54325 * 107.27126 * 178.91744 * 6 5 3 8 8 C 1.55153 * 102.94160 * 337.80563 * 7 6 5 9 9 H 1.09002 * 111.00110 * 277.38715 * 8 7 6 10 10 C 1.50700 * 111.00252 * 153.58173 * 8 7 6 11 11 O 1.21286 * 119.99674 * 241.45081 * 10 8 7 12 12 N 1.34773 * 120.00361 * 61.45171 * 10 8 7 13 13 C 1.46505 * 119.99830 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46871 * 179.97438 * 13 12 10 15 15 O 1.42896 * 109.47446 * 64.99745 * 14 13 12 16 16 C 1.42896 * 114.00367 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47288 * 180.02562 * 16 15 14 18 18 N 1.46490 * 109.47285 * 64.99834 * 17 16 15 19 19 C 1.46500 * 120.00355 * 89.99883 * 18 17 16 20 20 C 1.36938 * 120.00231 * 270.00329 * 18 17 16 21 21 H 1.08000 * 120.00501 * 141.95524 * 20 18 17 22 22 C 1.38817 * 119.99758 * 321.95904 * 20 18 17 23 23 N 1.31619 * 120.00103 * 157.13929 * 22 20 18 24 24 Si 1.86799 * 119.99947 * 337.13128 * 22 20 18 25 25 H 1.48501 * 109.46985 * 95.67942 * 24 22 20 26 26 H 1.48491 * 109.47411 * 215.67965 * 24 22 20 27 27 H 1.48504 * 109.46961 * 335.68405 * 24 22 20 28 28 C 1.47429 * 125.64734 * 179.97438 * 5 3 2 29 29 H 1.08994 * 109.47370 * 300.00076 * 1 2 3 30 30 H 1.09002 * 109.46935 * 60.00496 * 1 2 3 31 31 H 1.08999 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47370 * 239.99923 * 2 1 3 33 33 H 1.09002 * 109.46935 * 119.99504 * 2 1 3 34 34 H 1.08994 * 109.88212 * 59.49660 * 6 5 3 35 35 H 1.09001 * 109.87550 * 298.33600 * 6 5 3 36 36 H 1.09002 * 110.71578 * 219.43801 * 7 6 5 37 37 H 1.08999 * 110.86893 * 96.24232 * 7 6 5 38 38 H 0.96999 * 119.99656 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.47232 * 59.99668 * 13 12 10 40 40 H 1.08994 * 109.47216 * 299.99493 * 13 12 10 41 41 H 1.09004 * 109.47272 * 304.99747 * 14 13 12 42 42 H 1.09000 * 109.47115 * 184.99891 * 14 13 12 43 43 H 1.09002 * 109.46821 * 300.00286 * 16 15 14 44 44 H 1.08998 * 109.47062 * 60.00159 * 16 15 14 45 45 H 1.08996 * 109.46976 * 185.00189 * 17 16 15 46 46 H 1.09004 * 109.46730 * 304.99651 * 17 16 15 47 47 H 1.09001 * 109.46733 * 85.68651 * 19 18 17 48 48 H 1.08996 * 109.47393 * 205.68880 * 19 18 17 49 49 H 1.08999 * 109.47036 * 325.69009 * 19 18 17 50 50 H 0.96998 * 119.99917 * 180.02562 * 23 22 20 51 51 H 1.08996 * 110.36525 * 85.31606 * 28 5 3 52 52 H 1.08996 * 110.36974 * 322.98793 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.4182 0.6492 0.0005 7 6 5.7689 1.3951 -0.0266 8 6 5.3889 2.7810 -0.6115 9 1 5.3407 2.7458 -1.6999 10 6 6.3521 3.8443 -0.1505 11 8 5.9519 4.7806 0.5084 12 7 7.6583 3.7549 -0.4704 13 6 8.5947 4.7885 -0.0217 14 6 10.0027 4.4499 -0.5155 15 8 10.0333 4.5060 -1.9430 16 6 11.3099 4.2038 -2.5094 17 6 11.2257 4.2944 -4.0345 18 7 10.9454 5.6777 -4.4267 19 6 12.0504 6.6063 -4.6776 20 6 9.6504 6.1029 -4.5589 21 1 9.3738 7.0979 -4.2430 22 6 8.6931 5.2549 -5.0989 23 7 7.4187 5.4458 -4.8312 24 14 9.2138 3.8430 -6.2057 25 1 9.3283 2.6000 -5.4014 26 1 8.1993 3.6505 -7.2727 27 1 10.5278 4.1563 -6.8226 28 6 3.9831 3.0021 0.0001 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.3257 0.0175 -0.8828 35 1 4.3484 0.0413 0.9025 36 1 6.4788 0.8836 -0.6766 37 1 6.1752 1.4993 0.9794 38 1 7.9784 3.0059 -0.9971 39 1 8.5927 4.8325 1.0673 40 1 8.2904 5.7543 -0.4250 41 1 10.2721 3.4466 -0.1855 42 1 10.7133 5.1692 -0.1083 43 1 12.0479 4.9177 -2.1436 44 1 11.6059 3.1952 -2.2208 45 1 12.1734 3.9781 -4.4701 46 1 10.4265 3.6458 -4.3933 47 1 12.3846 6.5027 -5.7099 48 1 11.7123 7.6281 -4.5059 49 1 12.8763 6.3787 -4.0037 50 1 6.7499 4.8531 -5.2083 51 1 4.0681 3.3815 1.0183 52 1 3.4057 3.6916 -0.6158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571345218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:22 Heat of formation + Delta-G solvation = -89.694413 kcal Electronic energy + Delta-G solvation = -30751.092842 eV Core-core repulsion = 26558.815231 eV Total energy + Delta-G solvation = -4192.277611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.51251 -39.34046 -37.75989 -37.14869 -35.62947 -34.27470 -33.13443 -31.95714 -31.52551 -29.83790 -29.31491 -28.11417 -26.05568 -25.52033 -23.21997 -22.89823 -22.69580 -21.69855 -20.66901 -19.93782 -19.31818 -17.61225 -17.34596 -16.73298 -16.42341 -16.17140 -15.90329 -15.54535 -15.21000 -15.10990 -14.81460 -14.56018 -13.85832 -13.76239 -13.66830 -13.66164 -13.36847 -13.07736 -12.90113 -12.76052 -12.55509 -12.46077 -12.42145 -12.08384 -11.95246 -11.86254 -11.71984 -11.51636 -11.42996 -11.31729 -11.06336 -11.03063 -10.85010 -10.67221 -10.38456 -9.97778 -9.80962 -9.64635 -9.54334 -9.01566 -8.83767 -8.76259 -8.40914 -6.75413 -5.86924 -3.27382 2.50113 2.72730 2.82141 3.30135 3.44482 3.48214 3.52578 4.11005 4.17143 4.25377 4.52263 4.59520 4.63436 4.80940 4.84646 4.98614 5.03350 5.08377 5.16126 5.20796 5.29051 5.32450 5.35944 5.48953 5.50371 5.52968 5.60271 5.64317 5.71859 5.76871 5.82852 5.86658 5.91350 5.93338 5.99182 6.03628 6.10909 6.23057 6.25507 6.26705 6.51645 6.66895 6.70402 6.74916 7.33114 7.72309 7.81771 8.02542 8.14864 8.43195 8.48130 9.05442 9.82000 10.19787 11.28547 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002627 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.380640 B =10655.692716 C =11582.725654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.123 4.123 8 C -0.125 4.125 9 H 0.118 0.882 10 C 0.530 3.470 11 O -0.543 6.543 12 N -0.710 5.710 13 C 0.127 3.873 14 C 0.046 3.954 15 O -0.340 6.340 16 C 0.048 3.952 17 C 0.136 3.864 18 N -0.606 5.606 19 C 0.125 3.875 20 C -0.252 4.252 21 H 0.074 0.926 22 C 0.043 3.957 23 N -0.893 5.893 24 Si 0.871 3.129 25 H -0.288 1.288 26 H -0.303 1.303 27 H -0.273 1.273 28 C 0.127 3.873 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.403 0.597 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.029 0.971 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.006 0.994 48 H 0.045 0.955 49 H 0.023 0.977 50 H 0.258 0.742 51 H 0.082 0.918 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -15.253 12.040 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.414 6.414 5 N -0.358 5.358 6 C -0.021 4.021 7 C -0.161 4.161 8 C -0.147 4.147 9 H 0.136 0.864 10 C 0.315 3.685 11 O -0.421 6.421 12 N -0.361 5.361 13 C 0.004 3.996 14 C -0.032 4.032 15 O -0.258 6.258 16 C -0.031 4.031 17 C 0.009 3.991 18 N -0.330 5.330 19 C -0.020 4.020 20 C -0.380 4.380 21 H 0.091 0.909 22 C -0.157 4.157 23 N -0.534 5.534 24 Si 0.702 3.298 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.199 1.199 28 C 0.004 3.996 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.068 0.932 51 H 0.100 0.900 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.654 -14.044 12.360 18.781 hybrid contribution 0.884 -1.338 -0.840 1.810 sum -0.771 -15.382 11.520 19.233 Atomic orbital electron populations 1.21543 0.92965 1.01537 1.03495 1.21614 0.98568 0.93505 1.04187 1.20476 0.80224 0.91980 0.75901 1.90729 1.54226 1.46777 1.49700 1.48571 1.05229 1.08188 1.73804 1.22044 0.86596 0.91376 1.02058 1.22659 0.96701 0.94087 1.02618 1.22466 0.94729 0.94369 1.03173 0.86446 1.19949 0.82578 0.86339 0.79593 1.90707 1.77588 1.33975 1.39792 1.45739 1.07514 1.27394 1.55439 1.21331 0.87180 0.92979 0.98136 1.22650 0.96084 0.99393 0.85090 1.88351 1.30526 1.90840 1.16072 1.23280 0.85563 0.96454 0.97844 1.21279 0.98901 0.88522 0.90379 1.43969 1.03311 1.06986 1.78766 1.21073 0.90051 0.94447 0.96471 1.18614 0.82323 1.01687 1.35424 0.90851 1.25348 0.94876 0.97553 0.97909 1.69914 1.00202 1.39180 1.44150 0.87041 0.78064 0.82887 0.81855 1.21673 1.23172 1.19852 1.21987 0.90861 0.84454 1.02263 0.91975 0.91863 0.92070 0.88934 0.89071 0.90818 0.90984 0.88924 0.89900 0.76226 0.90839 0.89963 0.94027 0.92601 0.94421 0.95339 0.92932 0.92084 0.97635 0.93630 0.95800 0.93185 0.90027 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.14 -1.11 5.61 -27.88 -0.16 -1.27 16 3 C 0.53 6.60 7.85 -10.99 -0.09 6.51 16 4 O -0.54 -9.11 16.24 5.55 0.09 -9.02 16 5 N -0.62 -7.18 3.33 -170.53 -0.57 -7.75 16 6 C 0.10 0.78 6.49 -3.06 -0.02 0.76 16 7 C -0.12 -1.01 6.37 -24.90 -0.16 -1.17 16 8 C -0.13 -1.57 3.43 -89.64 -0.31 -1.87 16 9 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 10 C 0.53 8.35 7.16 -10.99 -0.08 8.27 16 11 O -0.54 -10.53 15.80 5.55 0.09 -10.44 16 12 N -0.71 -10.50 5.45 -60.29 -0.33 -10.82 16 13 C 0.13 1.93 6.06 -4.04 -0.02 1.90 16 14 C 0.05 0.65 6.07 37.16 0.23 0.88 16 15 O -0.34 -6.59 9.76 -35.23 -0.34 -6.94 16 16 C 0.05 0.84 6.28 37.16 0.23 1.08 16 17 C 0.14 2.80 4.96 -4.04 -0.02 2.78 16 18 N -0.61 -14.25 2.45 -181.12 -0.44 -14.69 16 19 C 0.12 2.46 10.70 59.85 0.64 3.10 16 20 C -0.25 -7.01 9.39 -15.06 -0.14 -7.15 16 21 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 22 C 0.04 1.23 5.29 -17.43 -0.09 1.14 16 23 N -0.89 -26.98 13.97 55.49 0.78 -26.21 16 24 Si 0.87 21.81 25.10 -169.99 -4.27 17.55 16 25 H -0.29 -6.87 6.68 56.52 0.38 -6.50 16 26 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 27 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.13 1.75 5.98 -2.54 -0.02 1.73 16 29 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.65 8.03 -51.93 -0.42 0.24 16 38 H 0.40 5.37 8.47 -40.82 -0.35 5.02 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 46 H 0.06 1.40 3.38 -51.93 -0.18 1.22 16 47 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 48 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 49 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.08 1.20 7.51 -51.93 -0.39 0.81 16 52 H 0.09 1.38 8.04 -51.93 -0.42 0.96 16 LS Contribution 419.99 15.07 6.33 6.33 Total: -1.00 -36.73 419.99 -7.67 -44.40 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -9.34 Total: 1.71 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 0.34 Total: 15.89 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.56 Total: -59.47 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.17 Total: -26.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.27 Total: 17.55 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -36.73 -7.67 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571345218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.294 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds