Wall clock time and date at job start Wed Apr 1 2020 00:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46980 * 2 1 4 4 O 1.21286 * 119.99867 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00054 * 179.97438 * 3 2 1 6 6 C 1.47025 * 125.65008 * 0.02866 * 5 3 2 7 7 C 1.54325 * 107.27126 * 178.91744 * 6 5 3 8 8 C 1.55153 * 102.94160 * 337.80563 * 7 6 5 9 9 H 1.09002 * 111.00110 * 277.38715 * 8 7 6 10 10 C 1.50700 * 111.00252 * 153.58173 * 8 7 6 11 11 O 1.21286 * 119.99674 * 241.45081 * 10 8 7 12 12 N 1.34773 * 120.00361 * 61.45171 * 10 8 7 13 13 C 1.46505 * 119.99830 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46871 * 179.97438 * 13 12 10 15 15 O 1.42896 * 109.47446 * 64.99745 * 14 13 12 16 16 C 1.42896 * 114.00367 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47288 * 180.02562 * 16 15 14 18 18 N 1.46490 * 109.47285 * 64.99834 * 17 16 15 19 19 C 1.46500 * 120.00355 * 89.99883 * 18 17 16 20 20 C 1.36938 * 120.00231 * 270.00329 * 18 17 16 21 21 H 1.08000 * 120.00501 * 141.95524 * 20 18 17 22 22 C 1.38817 * 119.99758 * 321.95904 * 20 18 17 23 23 N 1.31619 * 120.00103 * 157.13929 * 22 20 18 24 24 Si 1.86799 * 119.99947 * 337.13128 * 22 20 18 25 25 H 1.48501 * 109.46985 * 95.67942 * 24 22 20 26 26 H 1.48491 * 109.47411 * 215.67965 * 24 22 20 27 27 H 1.48504 * 109.46961 * 335.68405 * 24 22 20 28 28 C 1.47429 * 125.64734 * 179.97438 * 5 3 2 29 29 H 1.08994 * 109.47370 * 300.00076 * 1 2 3 30 30 H 1.09002 * 109.46935 * 60.00496 * 1 2 3 31 31 H 1.08999 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47370 * 239.99923 * 2 1 3 33 33 H 1.09002 * 109.46935 * 119.99504 * 2 1 3 34 34 H 1.08994 * 109.88212 * 59.49660 * 6 5 3 35 35 H 1.09001 * 109.87550 * 298.33600 * 6 5 3 36 36 H 1.09002 * 110.71578 * 219.43801 * 7 6 5 37 37 H 1.08999 * 110.86893 * 96.24232 * 7 6 5 38 38 H 0.96999 * 119.99656 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.47232 * 59.99668 * 13 12 10 40 40 H 1.08994 * 109.47216 * 299.99493 * 13 12 10 41 41 H 1.09004 * 109.47272 * 304.99747 * 14 13 12 42 42 H 1.09000 * 109.47115 * 184.99891 * 14 13 12 43 43 H 1.09002 * 109.46821 * 300.00286 * 16 15 14 44 44 H 1.08998 * 109.47062 * 60.00159 * 16 15 14 45 45 H 1.08996 * 109.46976 * 185.00189 * 17 16 15 46 46 H 1.09004 * 109.46730 * 304.99651 * 17 16 15 47 47 H 1.09001 * 109.46733 * 85.68651 * 19 18 17 48 48 H 1.08996 * 109.47393 * 205.68880 * 19 18 17 49 49 H 1.08999 * 109.47036 * 325.69009 * 19 18 17 50 50 H 0.96998 * 119.99917 * 180.02562 * 23 22 20 51 51 H 1.08996 * 110.36525 * 85.31606 * 28 5 3 52 52 H 1.08996 * 110.36974 * 322.98793 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.4182 0.6492 0.0005 7 6 5.7689 1.3951 -0.0266 8 6 5.3889 2.7810 -0.6115 9 1 5.3407 2.7458 -1.6999 10 6 6.3521 3.8443 -0.1505 11 8 5.9519 4.7806 0.5084 12 7 7.6583 3.7549 -0.4704 13 6 8.5947 4.7885 -0.0217 14 6 10.0027 4.4499 -0.5155 15 8 10.0333 4.5060 -1.9430 16 6 11.3099 4.2038 -2.5094 17 6 11.2257 4.2944 -4.0345 18 7 10.9454 5.6777 -4.4267 19 6 12.0504 6.6063 -4.6776 20 6 9.6504 6.1029 -4.5589 21 1 9.3738 7.0979 -4.2430 22 6 8.6931 5.2549 -5.0989 23 7 7.4187 5.4458 -4.8312 24 14 9.2138 3.8430 -6.2057 25 1 9.3283 2.6000 -5.4014 26 1 8.1993 3.6505 -7.2727 27 1 10.5278 4.1563 -6.8226 28 6 3.9831 3.0021 0.0001 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.3257 0.0175 -0.8828 35 1 4.3484 0.0413 0.9025 36 1 6.4788 0.8836 -0.6766 37 1 6.1752 1.4993 0.9794 38 1 7.9784 3.0059 -0.9971 39 1 8.5927 4.8325 1.0673 40 1 8.2904 5.7543 -0.4250 41 1 10.2721 3.4466 -0.1855 42 1 10.7133 5.1692 -0.1083 43 1 12.0479 4.9177 -2.1436 44 1 11.6059 3.1952 -2.2208 45 1 12.1734 3.9781 -4.4701 46 1 10.4265 3.6458 -4.3933 47 1 12.3846 6.5027 -5.7099 48 1 11.7123 7.6281 -4.5059 49 1 12.8763 6.3787 -4.0037 50 1 6.7499 4.8531 -5.2083 51 1 4.0681 3.3815 1.0183 52 1 3.4057 3.6916 -0.6158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571345218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:21 Heat of formation + Delta-G solvation = -118.129264 kcal Electronic energy + Delta-G solvation = -30752.325870 eV Core-core repulsion = 26558.815231 eV Total energy + Delta-G solvation = -4193.510639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55049 -40.49909 -39.09868 -38.22073 -37.28685 -35.65189 -33.95331 -33.63618 -32.84702 -31.14656 -30.21663 -29.47194 -27.93942 -26.43203 -24.58464 -24.14194 -23.49111 -22.84195 -22.43997 -21.11994 -20.18738 -18.75739 -18.59783 -18.27013 -17.80409 -17.46164 -17.01484 -16.78492 -16.56407 -16.29269 -16.09701 -15.61489 -15.37889 -15.24498 -14.89287 -14.67574 -14.53779 -14.46672 -14.30889 -13.95330 -13.75879 -13.68858 -13.54347 -13.21931 -13.14161 -12.95550 -12.84295 -12.66319 -12.60806 -12.42950 -12.35481 -12.24742 -12.10202 -12.07732 -11.85291 -11.70022 -11.41607 -11.00361 -10.91411 -10.52565 -10.27602 -10.08949 -9.74780 -8.65343 -8.04584 -5.42358 1.32447 1.46325 1.55669 1.56013 1.57157 1.79409 2.33808 2.51294 2.93646 3.17028 3.20374 3.42809 3.57165 3.73357 3.77580 4.01850 4.13118 4.19274 4.21158 4.25699 4.26607 4.29191 4.39165 4.51227 4.55707 4.56432 4.60894 4.62872 4.68269 4.75375 4.76380 4.80958 4.83262 4.91191 4.96598 4.98056 4.98584 5.03592 5.10038 5.13993 5.19208 5.19518 5.35431 5.44322 6.03800 6.26092 6.45063 6.52943 6.61110 7.09046 7.11462 7.20657 7.75906 8.15318 9.15120 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002627 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.380640 B =10655.692716 C =11582.725654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.512 3.488 4 O -0.598 6.598 5 N -0.622 5.622 6 C 0.098 3.902 7 C -0.111 4.111 8 C -0.120 4.120 9 H 0.111 0.889 10 C 0.524 3.476 11 O -0.590 6.590 12 N -0.702 5.702 13 C 0.128 3.872 14 C 0.051 3.949 15 O -0.387 6.387 16 C 0.051 3.949 17 C 0.124 3.876 18 N -0.622 5.622 19 C 0.123 3.877 20 C -0.239 4.239 21 H 0.022 0.978 22 C -0.012 4.012 23 N -0.945 5.945 24 Si 0.943 3.057 25 H -0.264 1.264 26 H -0.317 1.317 27 H -0.265 1.265 28 C 0.127 3.873 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.413 0.587 39 H 0.096 0.904 40 H 0.032 0.968 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.038 0.962 47 H 0.014 0.986 48 H 0.032 0.968 49 H 0.061 0.939 50 H 0.256 0.744 51 H 0.065 0.935 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -19.992 12.429 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.304 3.696 4 O -0.479 6.479 5 N -0.356 5.356 6 C -0.023 4.023 7 C -0.148 4.148 8 C -0.142 4.142 9 H 0.129 0.871 10 C 0.310 3.690 11 O -0.471 6.471 12 N -0.353 5.353 13 C 0.004 3.996 14 C -0.026 4.026 15 O -0.306 6.306 16 C -0.028 4.028 17 C 0.000 4.000 18 N -0.347 5.347 19 C -0.021 4.021 20 C -0.369 4.369 21 H 0.039 0.961 22 C -0.208 4.208 23 N -0.589 5.589 24 Si 0.772 3.228 25 H -0.191 1.191 26 H -0.247 1.247 27 H -0.189 1.189 28 C 0.004 3.996 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.249 0.751 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.056 0.944 47 H 0.032 0.968 48 H 0.051 0.949 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.651 -18.849 12.750 22.816 hybrid contribution -0.048 0.279 -0.898 0.941 sum 1.603 -18.570 11.852 22.088 Atomic orbital electron populations 1.21565 0.93587 1.02852 1.01657 1.21690 0.97922 0.90183 1.06865 1.21524 0.79974 0.93525 0.74620 1.90700 1.55781 1.48925 1.52452 1.48714 1.05973 1.07972 1.72919 1.22400 0.84450 0.90526 1.04926 1.22750 0.97922 0.90868 1.03297 1.22355 0.92993 0.96205 1.02618 0.87079 1.20559 0.83222 0.86385 0.78810 1.90680 1.78379 1.35925 1.42076 1.45723 1.07218 1.27357 1.54959 1.21320 0.88173 0.90905 0.99212 1.22763 0.95128 1.01943 0.82774 1.88286 1.31944 1.91502 1.18851 1.23185 0.85067 0.99062 0.95459 1.21477 0.99613 0.86012 0.92942 1.44099 1.02275 1.08829 1.79480 1.21161 0.89891 0.93164 0.97877 1.18349 0.84698 0.99701 1.34174 0.96068 1.25927 0.94559 1.00970 0.99315 1.70080 1.01611 1.41247 1.45983 0.85877 0.77204 0.80512 0.79186 1.19105 1.24662 1.18919 1.21731 0.91625 0.85671 1.00622 0.93686 0.94002 0.88982 0.86243 0.85870 0.88205 0.87773 0.86043 0.89108 0.75068 0.88647 0.94922 0.90076 0.91313 0.93384 0.91267 0.89477 0.94374 0.96753 0.94932 0.92088 0.93564 0.91642 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.20 71.98 0.66 -1.51 16 2 C -0.13 -1.72 5.61 29.85 0.17 -1.55 16 3 C 0.51 12.88 7.85 87.66 0.69 13.57 16 4 O -0.60 -21.69 16.24 -3.05 -0.05 -21.74 16 5 N -0.62 -14.03 3.33 -811.83 -2.70 -16.73 16 6 C 0.10 1.15 6.49 86.73 0.56 1.71 16 7 C -0.11 -1.50 6.37 31.78 0.20 -1.30 16 8 C -0.12 -3.03 3.43 -10.16 -0.03 -3.07 16 9 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 10 C 0.52 17.14 7.16 87.66 0.63 17.76 16 11 O -0.59 -24.53 15.80 -3.05 -0.05 -24.58 16 12 N -0.70 -20.65 5.45 -463.06 -2.53 -23.18 16 13 C 0.13 3.90 6.06 86.38 0.52 4.42 16 14 C 0.05 1.34 6.07 71.98 0.44 1.78 16 15 O -0.39 -14.35 9.76 -148.98 -1.45 -15.80 16 16 C 0.05 1.58 6.28 71.98 0.45 2.03 16 17 C 0.12 4.70 4.96 86.38 0.43 5.13 16 18 N -0.62 -28.38 2.45 -726.95 -1.78 -30.16 16 19 C 0.12 4.62 10.70 127.77 1.37 5.99 16 20 C -0.24 -13.64 9.39 84.03 0.79 -12.85 16 21 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 22 C -0.01 -0.68 5.29 84.86 0.45 -0.23 16 23 N -0.94 -59.53 13.97 21.65 0.30 -59.23 16 24 Si 0.94 45.13 25.10 68.60 1.72 46.86 16 25 H -0.26 -11.50 6.68 99.48 0.66 -10.84 16 26 H -0.32 -15.74 7.11 99.48 0.71 -15.04 16 27 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.13 3.77 5.98 86.85 0.52 4.29 16 29 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.14 8.03 -2.39 -0.02 1.12 16 38 H 0.41 10.36 8.47 -92.71 -0.79 9.57 16 39 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 2.67 8.07 -2.39 -0.02 2.65 16 46 H 0.04 1.62 3.38 -2.38 -0.01 1.62 16 47 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 48 H 0.03 1.27 8.00 -2.39 -0.02 1.25 16 49 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 50 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.07 2.12 7.51 -2.39 -0.02 2.10 16 52 H 0.05 1.76 8.04 -2.39 -0.02 1.75 16 Total: -1.00 -89.25 419.99 1.37 -87.88 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.07 Total: 20.51 kcal Atomic # 6 Polarization: 28.34 SS G_CDS: 7.84 Total: 36.18 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -6.70 Total: -129.31 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: -1.55 Total: -62.12 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.72 Total: 46.86 kcal Total: -89.25 1.37 -87.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571345218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.250 kcal (2) G-P(sol) polarization free energy of solvation -89.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds