Wall clock time and date at job start Wed Apr 1 2020 00:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.52544 * 2 1 4 4 C 1.53045 * 109.49523 * 120.07783 * 2 1 3 5 5 C 1.53036 * 109.53969 * 181.31950 * 4 2 1 6 6 C 1.53198 * 109.31180 * 298.63283 * 5 4 2 7 7 N 1.46929 * 108.77185 * 54.63597 * 6 5 4 8 8 C 1.34776 * 120.62955 * 126.37317 * 7 6 5 9 9 O 1.21348 * 119.99762 * 188.64785 * 8 7 6 10 10 C 1.49444 * 120.00010 * 8.64017 * 8 7 6 11 11 O 1.21352 * 120.00202 * 6.77411 * 10 8 7 12 12 N 1.34778 * 119.99980 * 186.77477 * 10 8 7 13 13 C 1.46508 * 120.00211 * 180.02562 * 12 10 8 14 14 C 1.52991 * 109.47392 * 179.97438 * 13 12 10 15 15 O 1.42903 * 109.47064 * 64.99664 * 14 13 12 16 16 C 1.42897 * 114.00068 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47405 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47261 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.46921 * 180.02562 * 18 17 16 20 20 C 1.36940 * 119.99653 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00074 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99612 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99950 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00044 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47222 * 89.99757 * 24 22 20 26 26 H 1.48501 * 109.46915 * 209.99506 * 24 22 20 27 27 H 1.48502 * 109.47365 * 329.99445 * 24 22 20 28 28 C 1.46923 * 118.73830 * 306.64043 * 7 6 5 29 29 H 1.08993 * 109.47472 * 299.92130 * 1 2 3 30 30 H 1.09006 * 109.46693 * 59.92438 * 1 2 3 31 31 H 1.08993 * 109.47291 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.45990 * 61.29541 * 4 2 1 33 33 H 1.09004 * 109.45953 * 301.33843 * 4 2 1 34 34 H 1.09002 * 109.50011 * 178.68995 * 5 4 2 35 35 H 1.08993 * 109.52925 * 58.60041 * 5 4 2 36 36 H 1.09001 * 109.58898 * 294.84996 * 6 5 4 37 37 H 1.08997 * 109.59002 * 174.42127 * 6 5 4 38 38 H 0.96999 * 120.00244 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.46961 * 59.99486 * 13 12 10 40 40 H 1.08997 * 109.46966 * 300.00066 * 13 12 10 41 41 H 1.09002 * 109.47362 * 305.00381 * 14 13 12 42 42 H 1.08993 * 109.47467 * 184.99703 * 14 13 12 43 43 H 1.09000 * 109.47004 * 60.00278 * 16 15 14 44 44 H 1.09000 * 109.47775 * 300.00260 * 16 15 14 45 45 H 1.09000 * 109.47319 * 300.00474 * 17 16 15 46 46 H 1.09000 * 109.46443 * 60.00669 * 17 16 15 47 47 H 1.09000 * 109.47470 * 300.00540 * 18 17 16 48 48 H 1.09000 * 109.46717 * 60.00994 * 18 17 16 49 49 H 0.96997 * 119.99953 * 0.02562 * 19 18 17 50 50 H 0.97001 * 120.00514 * 180.02562 * 23 22 20 51 51 H 1.09008 * 109.58552 * 173.14447 * 28 7 6 52 52 H 1.08994 * 109.59163 * 293.57154 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7231 1.2484 5 6 3.5707 -0.6950 1.2662 6 6 4.1053 -1.4268 0.0310 7 7 3.5046 -0.8292 -1.1694 8 6 4.2812 -0.3858 -2.1777 9 8 3.7893 0.2451 -3.0901 10 6 5.7482 -0.6709 -2.1720 11 8 6.2207 -1.4036 -1.3278 12 7 6.5465 -0.1144 -3.1045 13 6 7.9846 -0.3944 -3.0993 14 6 8.6542 0.3546 -4.2531 15 8 8.5423 1.7625 -4.0357 16 6 9.1394 2.5583 -5.0615 17 6 8.9600 4.0404 -4.7267 18 6 9.5999 4.8924 -5.8246 19 7 9.4287 6.3116 -5.5037 20 6 9.9233 7.2691 -6.3485 21 1 10.4392 6.9781 -7.2515 22 6 9.7605 8.6137 -6.0447 23 7 10.2363 9.5341 -6.8564 24 14 8.8674 9.1170 -4.4832 25 1 9.8446 9.2396 -3.3717 26 1 8.1945 10.4234 -4.6970 27 1 7.8532 8.0881 -4.1394 28 6 2.0416 -0.7188 -1.2470 29 1 -0.3634 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8894 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6966 -1.7572 1.2354 33 1 1.6580 -0.2244 2.1390 34 1 3.9333 -1.1897 2.1673 35 1 3.9163 0.3386 1.2546 36 1 3.8375 -2.4819 0.0870 37 1 5.1895 -1.3247 -0.0135 38 1 6.1689 0.4709 -3.7795 39 1 8.1466 -1.4656 -3.2192 40 1 8.4153 -0.0655 -2.1536 41 1 8.1636 0.0917 -5.1903 42 1 9.7070 0.0773 -4.3039 43 1 8.6593 2.3411 -6.0156 44 1 10.2024 2.3267 -5.1286 45 1 7.8970 4.2718 -4.6599 46 1 9.4399 4.2579 -3.7725 47 1 10.6630 4.6610 -5.8910 48 1 9.1204 4.6750 -6.7790 49 1 8.9649 6.5729 -4.6928 50 1 10.1229 10.4737 -6.6440 51 1 1.7647 -0.1497 -2.1345 52 1 1.6021 -1.7149 -1.2974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571353826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:24 Heat of formation + Delta-G solvation = -128.286207 kcal Electronic energy + Delta-G solvation = -29333.124325 eV Core-core repulsion = 25139.173248 eV Total energy + Delta-G solvation = -4193.951077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09316 -40.13637 -39.15521 -38.82183 -37.24016 -36.16799 -34.69530 -34.18057 -32.87697 -32.23717 -30.55223 -28.25845 -27.16778 -26.82162 -24.88082 -23.93588 -23.32620 -23.05370 -22.45676 -21.61989 -20.69381 -19.65488 -18.72019 -18.26952 -17.81213 -17.47698 -17.08257 -16.74796 -16.58931 -16.37585 -15.97761 -15.77151 -15.48112 -15.35544 -15.21492 -15.15057 -14.86238 -14.64477 -14.51346 -14.11831 -13.92137 -13.67670 -13.58704 -13.38710 -13.08541 -12.88470 -12.79470 -12.70263 -12.50813 -12.33160 -12.14728 -12.06224 -11.99850 -11.93900 -11.85118 -11.81954 -11.69463 -11.35852 -10.99902 -10.58367 -10.45011 -10.20031 -9.83776 -9.33391 -8.05433 -5.39642 0.24220 1.21774 1.37192 1.40014 1.47563 2.02031 2.37893 2.46424 2.57540 3.21733 3.25823 3.65329 3.71708 3.80905 3.88387 3.90624 4.05086 4.07280 4.18053 4.28531 4.32070 4.32242 4.37531 4.50029 4.55142 4.58129 4.61729 4.70890 4.72667 4.73597 4.76710 4.81219 4.83808 4.85082 4.90568 5.03512 5.12169 5.16283 5.25990 5.27612 5.29883 5.31041 5.39414 5.46338 5.72514 5.88776 6.14043 6.18021 6.22931 6.59456 6.83699 7.04769 7.81030 7.99541 9.15756 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.001857 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.802509 B =15073.216038 C =16749.295747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.057 0.943 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.068 3.932 7 N -0.578 5.578 8 C 0.501 3.499 9 O -0.550 6.550 10 C 0.508 3.492 11 O -0.527 6.527 12 N -0.686 5.686 13 C 0.121 3.879 14 C 0.045 3.955 15 O -0.408 6.408 16 C 0.076 3.924 17 C -0.119 4.119 18 C 0.156 3.844 19 N -0.762 5.762 20 C -0.240 4.240 21 H 0.059 0.941 22 C -0.065 4.065 23 N -0.982 5.982 24 Si 0.957 3.043 25 H -0.276 1.276 26 H -0.293 1.293 27 H -0.254 1.254 28 C 0.108 3.892 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.417 0.583 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.366 0.634 50 H 0.259 0.741 51 H 0.078 0.922 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.653 -32.179 17.669 40.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.075 0.925 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.053 4.053 7 N -0.310 5.310 8 C 0.283 3.717 9 O -0.429 6.429 10 C 0.290 3.710 11 O -0.406 6.406 12 N -0.338 5.338 13 C -0.002 4.002 14 C -0.031 4.031 15 O -0.328 6.328 16 C -0.001 4.001 17 C -0.157 4.157 18 C 0.030 3.970 19 N -0.408 5.408 20 C -0.370 4.370 21 H 0.077 0.923 22 C -0.256 4.256 23 N -0.632 5.632 24 Si 0.784 3.216 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.179 1.179 28 C -0.013 4.013 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.254 0.746 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.050 0.950 48 H 0.047 0.953 49 H 0.199 0.801 50 H 0.068 0.932 51 H 0.097 0.903 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.529 -32.241 17.737 40.340 hybrid contribution -0.358 1.246 -0.086 1.299 sum -16.887 -30.995 17.651 39.464 Atomic orbital electron populations 1.21736 0.92799 1.02932 1.02435 1.21399 0.97192 0.99184 0.94610 0.92489 1.21621 0.94723 1.01477 0.97223 1.21953 0.96529 1.00690 0.98045 1.22925 1.02561 0.97479 0.82290 1.48116 1.07367 1.57851 1.17708 1.20268 0.88040 0.80163 0.83210 1.90762 1.75379 1.39565 1.37188 1.20048 0.87436 0.81310 0.82246 1.90502 1.76043 1.37614 1.36413 1.45878 1.08946 1.47863 1.31141 1.21712 0.77679 1.00892 0.99880 1.22922 1.01885 0.80491 0.97804 1.87868 1.79831 1.17369 1.47698 1.22313 0.98003 0.89312 0.90474 1.21537 1.01419 0.93714 0.98995 1.20664 0.97995 0.82075 0.96259 1.42744 1.69487 1.02417 1.26154 1.19066 1.28495 0.87131 1.02355 0.92302 1.25545 1.02328 0.95600 1.02150 1.69879 1.52943 1.00279 1.40099 0.85380 0.79046 0.77507 0.79687 1.20218 1.22004 1.17890 1.21881 0.77624 1.02170 0.99660 0.91513 0.92688 0.91211 0.90371 0.90632 0.88652 0.92985 0.89908 0.85624 0.74616 0.87381 0.90488 0.90991 0.88962 0.91878 0.91538 0.91800 0.91469 0.95015 0.95287 0.80119 0.93227 0.90349 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 71.98 0.66 -0.51 16 2 C -0.10 -1.21 2.86 -10.86 -0.03 -1.24 16 3 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -0.99 5.17 30.62 0.16 -0.84 16 5 C -0.13 -1.46 6.08 30.67 0.19 -1.27 16 6 C 0.07 0.95 5.98 86.36 0.52 1.47 16 7 N -0.58 -10.16 2.98 -821.32 -2.45 -12.61 16 8 C 0.50 11.10 7.73 87.27 0.67 11.78 16 9 O -0.55 -15.01 15.93 -3.24 -0.05 -15.06 16 10 C 0.51 10.48 7.74 87.27 0.68 11.16 16 11 O -0.53 -11.43 13.18 -3.25 -0.04 -11.47 16 12 N -0.69 -12.37 5.49 -464.41 -2.55 -14.92 16 13 C 0.12 1.68 6.06 86.37 0.52 2.20 16 14 C 0.05 0.60 6.07 71.98 0.44 1.04 16 15 O -0.41 -8.61 10.29 -148.98 -1.53 -10.14 16 16 C 0.08 1.65 5.94 71.98 0.43 2.08 16 17 C -0.12 -3.48 5.70 30.59 0.17 -3.31 16 18 C 0.16 5.86 6.26 86.38 0.54 6.40 16 19 N -0.76 -36.67 5.41 -343.45 -1.86 -38.52 16 20 C -0.24 -14.02 10.47 84.03 0.88 -13.14 16 21 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 22 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 23 N -0.98 -63.76 13.97 21.65 0.30 -63.45 16 24 Si 0.96 46.48 27.74 68.60 1.90 48.38 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 28 C 0.11 1.55 5.70 86.22 0.49 2.04 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.13 2.19 4.32 -47.39 -0.20 1.99 16 38 H 0.42 7.81 7.96 -92.71 -0.74 7.07 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.37 16.87 5.53 -92.71 -0.51 16.36 16 50 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 51 H 0.08 1.41 7.00 -2.38 -0.02 1.39 16 52 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.03 416.20 -0.09 -75.11 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.59 Total: 28.25 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 6.78 Total: 14.44 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -6.55 Total: -129.51 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.63 Total: -36.67 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.90 Total: 48.38 kcal Total: -75.03 -0.09 -75.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571353826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.173 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds