Wall clock time and date at job start Wed Apr 1 2020 00:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47437 * 2 1 4 4 C 1.52997 * 109.46649 * 119.99910 * 2 1 3 5 5 C 1.53006 * 109.47194 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46963 * 299.99800 * 5 4 2 7 7 H 1.08997 * 109.47267 * 300.00059 * 6 5 4 8 8 C 1.50699 * 109.47062 * 179.97438 * 6 5 4 9 9 O 1.21282 * 119.99818 * 240.00087 * 8 6 5 10 10 N 1.34770 * 119.99968 * 59.99969 * 8 6 5 11 11 C 1.46504 * 119.99920 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.46691 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46962 * 65.00462 * 12 11 10 14 14 C 1.53006 * 109.46515 * 185.00065 * 12 11 10 15 15 O 1.42895 * 109.47132 * 55.00460 * 14 12 11 16 16 N 1.46895 * 109.47390 * 304.99722 * 12 11 10 17 17 C 1.46904 * 111.00011 * 154.99967 * 16 12 11 18 18 C 1.50700 * 109.47192 * 180.02562 * 17 16 12 19 19 O 1.21293 * 119.99810 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99675 * 180.28082 * 18 17 16 21 21 C 1.37102 * 119.99634 * 179.72687 * 20 18 17 22 22 H 1.08002 * 119.99868 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99860 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99894 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99956 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47031 * 60.00269 * 25 23 21 27 27 H 1.48504 * 109.46971 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47038 * 300.00246 * 25 23 21 29 29 C 1.53001 * 109.46979 * 59.99717 * 6 5 4 30 30 C 1.52997 * 109.47471 * 300.00112 * 29 6 5 31 31 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47640 * 300.00571 * 1 2 3 33 33 H 1.09005 * 109.47193 * 60.00455 * 1 2 3 34 34 H 1.09002 * 109.47571 * 299.99887 * 4 2 1 35 35 H 1.09005 * 109.47306 * 60.00181 * 4 2 1 36 36 H 1.09001 * 109.47303 * 179.97438 * 5 4 2 37 37 H 1.09005 * 109.46859 * 59.99891 * 5 4 2 38 38 H 0.97003 * 119.99927 * 0.02562 * 10 8 6 39 39 H 1.08997 * 109.47172 * 60.00469 * 11 10 8 40 40 H 1.08999 * 109.47137 * 299.99980 * 11 10 8 41 41 H 1.09001 * 109.46725 * 175.00259 * 14 12 11 42 42 H 1.08991 * 109.47544 * 294.99857 * 14 12 11 43 43 H 0.96706 * 113.99840 * 179.97438 * 15 14 12 44 44 H 1.00893 * 111.00470 * 278.95955 * 16 12 11 45 45 H 1.09009 * 109.46542 * 60.00300 * 17 16 12 46 46 H 1.08998 * 109.47050 * 300.00834 * 17 16 12 47 47 H 0.97001 * 120.00485 * 359.71840 * 20 18 17 48 48 H 0.97004 * 119.99542 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.47020 * 59.99801 * 29 6 5 50 50 H 1.09001 * 109.47343 * 179.97438 * 29 6 5 51 51 H 1.09001 * 109.47270 * 179.97438 * 30 29 6 52 52 H 1.08997 * 109.47063 * 299.99834 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 1.2493 5 6 3.5699 -0.7208 1.2497 6 6 4.0805 -1.4417 0.0005 7 1 3.7174 -2.4695 0.0003 8 6 5.5874 -1.4407 0.0006 9 8 6.1935 -0.9152 -0.9090 10 7 6.2616 -2.0238 1.0115 11 6 7.7266 -2.0233 1.0113 12 6 8.2370 -2.7446 2.2604 13 1 7.9490 -3.7949 2.2165 14 6 9.7618 -2.6361 2.3246 15 8 10.1444 -1.2606 2.2647 16 7 7.6512 -2.1257 3.4569 17 6 7.6087 -3.0778 4.5749 18 6 7.0026 -2.4089 5.7816 19 8 6.6410 -1.2529 5.7166 20 7 6.8669 -3.0936 6.9345 21 6 6.3206 -2.4834 8.0340 22 1 5.9993 -1.4538 7.9763 23 6 6.1802 -3.1894 9.2224 24 7 6.5716 -4.4419 9.2927 25 14 5.4365 -2.3577 10.7207 26 1 4.0564 -1.9101 10.4042 27 1 5.3985 -3.3186 11.8523 28 1 6.2639 -1.1833 11.0966 29 6 3.5705 -0.7205 -1.2488 30 6 2.0405 -0.7210 -1.2492 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.6765 -0.2074 2.1393 35 1 1.6765 -1.7489 1.2493 36 1 3.9332 -1.2342 2.1400 37 1 3.9329 0.3071 1.2499 38 1 5.7768 -2.4444 1.7388 39 1 8.0896 -0.9955 1.0110 40 1 8.0900 -2.5372 0.1214 41 1 10.1180 -3.0720 3.2580 42 1 10.2000 -3.1721 1.4829 43 1 11.0999 -1.1162 2.3011 44 1 8.1528 -1.2888 3.7136 45 1 8.6210 -3.4061 4.8111 46 1 7.0032 -3.9398 4.2952 47 1 7.1557 -4.0182 6.9865 48 1 6.4740 -4.9347 10.1226 49 1 3.9335 0.3073 -1.2485 50 1 3.9346 -1.2338 -2.1387 51 1 1.6773 -0.2068 -2.1390 52 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571445541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:53 Heat of formation + Delta-G solvation = -155.699584 kcal Electronic energy + Delta-G solvation = -30496.711576 eV Core-core repulsion = 26301.571766 eV Total energy + Delta-G solvation = -4195.139810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18455 -38.79283 -38.02827 -37.53584 -35.43226 -34.12480 -33.62797 -32.82101 -31.27476 -30.86002 -30.01306 -27.30782 -26.20468 -25.45777 -23.93783 -22.71227 -22.15663 -20.88919 -20.14068 -19.63666 -19.33909 -18.01357 -17.62155 -17.06034 -16.42577 -15.76620 -15.62807 -15.38226 -14.99271 -14.71165 -14.39823 -14.38338 -14.31745 -14.18734 -13.89099 -13.82584 -13.56235 -13.31363 -13.11706 -12.59332 -12.43755 -12.30029 -12.25216 -12.07422 -11.81874 -11.64069 -11.58561 -11.49323 -11.27017 -11.18640 -11.05340 -11.04598 -10.78733 -10.46848 -10.44081 -10.25191 -10.18964 -10.10048 -9.54251 -9.53019 -8.84763 -8.51993 -8.13022 -7.99483 -6.45081 -3.85925 2.79170 3.17781 3.23739 3.28056 3.32982 3.86752 3.91589 4.13711 4.37833 4.52928 4.54552 4.60638 4.74774 4.88005 4.96136 4.98967 5.10587 5.12438 5.17815 5.21012 5.29147 5.29469 5.33470 5.41893 5.42647 5.45969 5.52343 5.66411 5.68685 5.72363 5.76022 5.79508 5.90933 5.96128 6.02998 6.05715 6.10084 6.12114 6.17107 6.22341 6.25620 6.37931 6.61186 7.11835 7.43668 7.51994 7.63774 7.72458 8.02713 8.40345 8.57652 9.14681 9.50538 10.02016 10.72552 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008260 B = 0.002870 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.855606 B = 9752.884166 C =12658.769023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.104 4.104 7 H 0.093 0.907 8 C 0.515 3.485 9 O -0.553 6.553 10 N -0.712 5.712 11 C 0.137 3.863 12 C 0.075 3.925 13 H 0.093 0.907 14 C 0.046 3.954 15 O -0.565 6.565 16 N -0.659 5.659 17 C 0.047 3.953 18 C 0.440 3.560 19 O -0.580 6.580 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C -0.098 4.098 30 C -0.113 4.113 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.408 0.592 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.380 0.620 44 H 0.363 0.637 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 0.004 -18.472 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.125 4.125 7 H 0.111 0.889 8 C 0.301 3.699 9 O -0.432 6.432 10 N -0.363 5.363 11 C 0.013 3.987 12 C -0.036 4.036 13 H 0.111 0.889 14 C -0.034 4.034 15 O -0.370 6.370 16 N -0.292 5.292 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.464 6.464 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.135 4.135 30 C -0.151 4.151 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.227 0.773 44 H 0.185 0.815 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.081 0.919 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.217 0.986 -19.198 19.490 hybrid contribution 1.301 -0.768 1.626 2.219 sum -1.916 0.218 -17.572 17.678 Atomic orbital electron populations 1.21829 0.95400 1.01707 1.01522 1.21183 0.95260 0.99876 0.95070 0.91175 1.21586 0.94881 1.00854 0.97650 1.21536 0.95887 1.01305 0.96217 1.21333 0.91445 1.01842 0.97925 0.88882 1.20653 0.90006 0.77610 0.81609 1.90663 1.70558 1.45421 1.36531 1.45844 1.07184 1.58257 1.25011 1.21169 0.80067 1.01981 0.95522 1.21990 0.90349 0.99201 0.92094 0.88867 1.22843 0.96809 0.83469 1.00272 1.86499 1.28502 1.24722 1.97275 1.60131 1.57962 1.07939 1.03188 1.21761 0.99475 0.95739 0.91568 1.19763 0.85588 0.87872 0.84211 1.90544 1.54354 1.17508 1.83992 1.41856 1.54856 1.14046 1.09268 1.19651 1.36715 0.98512 0.88034 0.87974 1.25252 0.97725 0.95618 0.99275 1.69603 1.47522 1.08884 1.28382 0.85926 0.79645 0.78627 0.80090 1.19842 1.20980 1.19914 1.21324 0.94668 1.01303 0.96250 1.21614 0.95249 1.00634 0.97562 0.92760 0.92689 0.92915 0.91454 0.91795 0.90603 0.91362 0.75604 0.90470 0.91882 0.93043 0.93138 0.77307 0.81548 0.93971 0.89670 0.77526 0.91818 0.91288 0.91506 0.91906 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.10 -0.84 2.72 -90.62 -0.25 -1.09 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -1.08 5.20 -26.73 -0.14 -1.22 16 5 C -0.11 -1.24 5.10 -26.73 -0.14 -1.38 16 6 C -0.10 -1.14 2.53 -91.77 -0.23 -1.37 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 8 C 0.51 7.07 7.15 -10.99 -0.08 7.00 16 9 O -0.55 -9.46 15.98 5.56 0.09 -9.37 16 10 N -0.71 -9.03 5.28 -60.29 -0.32 -9.35 16 11 C 0.14 1.72 5.26 -4.04 -0.02 1.70 16 12 C 0.07 0.85 2.57 -67.71 -0.17 0.68 16 13 H 0.09 0.91 7.80 -51.93 -0.40 0.51 16 14 C 0.05 0.45 6.72 37.16 0.25 0.70 16 15 O -0.56 -6.11 12.05 -35.23 -0.42 -6.54 16 16 N -0.66 -9.84 5.31 -107.98 -0.57 -10.41 16 17 C 0.05 0.76 5.96 -4.97 -0.03 0.73 16 18 C 0.44 9.93 7.82 -10.98 -0.09 9.85 16 19 O -0.58 -15.29 15.78 5.55 0.09 -15.20 16 20 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 25 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 C -0.10 -1.03 4.49 -26.73 -0.12 -1.15 16 30 C -0.11 -0.97 5.21 -26.73 -0.14 -1.11 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.41 4.96 7.56 -40.82 -0.31 4.65 16 39 H 0.08 1.16 7.39 -51.93 -0.38 0.78 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.38 2.46 9.12 45.56 0.42 2.87 16 44 H 0.36 6.25 7.64 -39.30 -0.30 5.95 16 45 H 0.04 0.62 7.36 -51.92 -0.38 0.23 16 46 H 0.09 1.21 8.05 -51.93 -0.42 0.80 16 47 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 50 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 415.84 15.07 6.27 6.27 Total: -1.00 -32.96 415.84 -8.59 -41.55 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -8.30 Total: 19.83 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.05 Total: 4.70 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.23 Total: -56.98 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.25 Total: -31.11 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.96 -8.59 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571445541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.148 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds