Wall clock time and date at job start Wed Apr 1 2020 00:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47437 * 2 1 4 4 C 1.52997 * 109.46649 * 119.99910 * 2 1 3 5 5 C 1.53006 * 109.47194 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46963 * 299.99800 * 5 4 2 7 7 H 1.08997 * 109.47267 * 300.00059 * 6 5 4 8 8 C 1.50699 * 109.47062 * 179.97438 * 6 5 4 9 9 O 1.21282 * 119.99818 * 240.00087 * 8 6 5 10 10 N 1.34770 * 119.99968 * 59.99969 * 8 6 5 11 11 C 1.46504 * 119.99920 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.46691 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46962 * 65.00462 * 12 11 10 14 14 C 1.53006 * 109.46515 * 185.00065 * 12 11 10 15 15 O 1.42895 * 109.47132 * 55.00460 * 14 12 11 16 16 N 1.46895 * 109.47390 * 304.99722 * 12 11 10 17 17 C 1.46904 * 111.00011 * 154.99967 * 16 12 11 18 18 C 1.50700 * 109.47192 * 180.02562 * 17 16 12 19 19 O 1.21293 * 119.99810 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99675 * 180.28082 * 18 17 16 21 21 C 1.37102 * 119.99634 * 179.72687 * 20 18 17 22 22 H 1.08002 * 119.99868 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99860 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99894 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99956 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47031 * 60.00269 * 25 23 21 27 27 H 1.48504 * 109.46971 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47038 * 300.00246 * 25 23 21 29 29 C 1.53001 * 109.46979 * 59.99717 * 6 5 4 30 30 C 1.52997 * 109.47471 * 300.00112 * 29 6 5 31 31 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47640 * 300.00571 * 1 2 3 33 33 H 1.09005 * 109.47193 * 60.00455 * 1 2 3 34 34 H 1.09002 * 109.47571 * 299.99887 * 4 2 1 35 35 H 1.09005 * 109.47306 * 60.00181 * 4 2 1 36 36 H 1.09001 * 109.47303 * 179.97438 * 5 4 2 37 37 H 1.09005 * 109.46859 * 59.99891 * 5 4 2 38 38 H 0.97003 * 119.99927 * 0.02562 * 10 8 6 39 39 H 1.08997 * 109.47172 * 60.00469 * 11 10 8 40 40 H 1.08999 * 109.47137 * 299.99980 * 11 10 8 41 41 H 1.09001 * 109.46725 * 175.00259 * 14 12 11 42 42 H 1.08991 * 109.47544 * 294.99857 * 14 12 11 43 43 H 0.96706 * 113.99840 * 179.97438 * 15 14 12 44 44 H 1.00893 * 111.00470 * 278.95955 * 16 12 11 45 45 H 1.09009 * 109.46542 * 60.00300 * 17 16 12 46 46 H 1.08998 * 109.47050 * 300.00834 * 17 16 12 47 47 H 0.97001 * 120.00485 * 359.71840 * 20 18 17 48 48 H 0.97004 * 119.99542 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.47020 * 59.99801 * 29 6 5 50 50 H 1.09001 * 109.47343 * 179.97438 * 29 6 5 51 51 H 1.09001 * 109.47270 * 179.97438 * 30 29 6 52 52 H 1.08997 * 109.47063 * 299.99834 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 1.2493 5 6 3.5699 -0.7208 1.2497 6 6 4.0805 -1.4417 0.0005 7 1 3.7174 -2.4695 0.0003 8 6 5.5874 -1.4407 0.0006 9 8 6.1935 -0.9152 -0.9090 10 7 6.2616 -2.0238 1.0115 11 6 7.7266 -2.0233 1.0113 12 6 8.2370 -2.7446 2.2604 13 1 7.9490 -3.7949 2.2165 14 6 9.7618 -2.6361 2.3246 15 8 10.1444 -1.2606 2.2647 16 7 7.6512 -2.1257 3.4569 17 6 7.6087 -3.0778 4.5749 18 6 7.0026 -2.4089 5.7816 19 8 6.6410 -1.2529 5.7166 20 7 6.8669 -3.0936 6.9345 21 6 6.3206 -2.4834 8.0340 22 1 5.9993 -1.4538 7.9763 23 6 6.1802 -3.1894 9.2224 24 7 6.5716 -4.4419 9.2927 25 14 5.4365 -2.3577 10.7207 26 1 4.0564 -1.9101 10.4042 27 1 5.3985 -3.3186 11.8523 28 1 6.2639 -1.1833 11.0966 29 6 3.5705 -0.7205 -1.2488 30 6 2.0405 -0.7210 -1.2492 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.6765 -0.2074 2.1393 35 1 1.6765 -1.7489 1.2493 36 1 3.9332 -1.2342 2.1400 37 1 3.9329 0.3071 1.2499 38 1 5.7768 -2.4444 1.7388 39 1 8.0896 -0.9955 1.0110 40 1 8.0900 -2.5372 0.1214 41 1 10.1180 -3.0720 3.2580 42 1 10.2000 -3.1721 1.4829 43 1 11.0999 -1.1162 2.3011 44 1 8.1528 -1.2888 3.7136 45 1 8.6210 -3.4061 4.8111 46 1 7.0032 -3.9398 4.2952 47 1 7.1557 -4.0182 6.9865 48 1 6.4740 -4.9347 10.1226 49 1 3.9335 0.3073 -1.2485 50 1 3.9346 -1.2338 -2.1387 51 1 1.6773 -0.2068 -2.1390 52 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571445541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:52 Heat of formation + Delta-G solvation = -182.252198 kcal Electronic energy + Delta-G solvation = -30497.862984 eV Core-core repulsion = 26301.571766 eV Total energy + Delta-G solvation = -4196.291218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21265 -40.23646 -39.19222 -38.58576 -36.45238 -35.92661 -34.93294 -33.67518 -33.23314 -31.71663 -31.11356 -28.19227 -27.72565 -26.33647 -25.59386 -23.54699 -23.03088 -21.87740 -21.10569 -20.99286 -20.53743 -19.91008 -18.57510 -18.12378 -17.72572 -17.08368 -16.79420 -16.46776 -16.42734 -16.08005 -15.82292 -15.34733 -15.25758 -15.16157 -15.09843 -15.03187 -14.66532 -14.48930 -14.05502 -13.87613 -13.54045 -13.45096 -13.27809 -13.14894 -13.07178 -12.93401 -12.88103 -12.59815 -12.41899 -12.36297 -12.23364 -12.12265 -12.00852 -11.88166 -11.57222 -11.48664 -11.24963 -10.96075 -10.90695 -10.61773 -10.32257 -9.99288 -9.94664 -9.33222 -8.45435 -5.93447 1.40170 1.42431 1.52617 1.69349 2.08678 2.28930 2.33475 2.86123 3.22375 3.34788 3.64735 3.68503 3.73373 3.77670 3.83871 4.05254 4.17263 4.17889 4.27439 4.31002 4.35879 4.44721 4.45858 4.51765 4.55318 4.59060 4.62521 4.64819 4.71940 4.78805 4.84534 4.94668 5.00075 5.01614 5.06719 5.16552 5.20716 5.27092 5.34366 5.42363 5.42841 5.46526 5.54907 5.62290 5.90314 6.11260 6.33759 6.62540 6.66126 6.88593 7.15056 7.33075 7.59308 8.15270 8.71624 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008260 B = 0.002870 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.855606 B = 9752.884166 C =12658.769023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.107 4.107 6 C -0.097 4.097 7 H 0.117 0.883 8 C 0.509 3.491 9 O -0.591 6.591 10 N -0.706 5.706 11 C 0.141 3.859 12 C 0.079 3.921 13 H 0.120 0.880 14 C 0.048 3.952 15 O -0.589 6.589 16 N -0.670 5.670 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.988 3.012 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.274 1.274 29 C -0.095 4.095 30 C -0.106 4.106 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.412 0.588 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.397 0.603 44 H 0.348 0.652 45 H 0.066 0.934 46 H 0.113 0.887 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.047 0.953 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -1.754 -18.878 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.077 0.923 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.118 4.118 7 H 0.134 0.866 8 C 0.297 3.703 9 O -0.473 6.473 10 N -0.357 5.357 11 C 0.016 3.984 12 C -0.031 4.031 13 H 0.137 0.863 14 C -0.032 4.032 15 O -0.398 6.398 16 N -0.302 5.302 17 C -0.068 4.068 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.812 3.188 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.133 4.133 30 C -0.143 4.143 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.249 0.751 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.247 0.753 44 H 0.168 0.832 45 H 0.084 0.916 46 H 0.131 0.869 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.675 -0.814 -19.602 19.960 hybrid contribution 1.509 -0.177 1.700 2.281 sum -2.166 -0.991 -17.902 18.060 Atomic orbital electron populations 1.21797 0.94171 1.02297 1.01870 1.21166 0.96232 0.99188 0.94746 0.92277 1.21578 0.93430 1.01701 0.97979 1.21466 0.97189 0.99938 0.95883 1.21343 0.89433 1.03133 0.97894 0.86556 1.21178 0.91184 0.76837 0.81120 1.90641 1.71527 1.47079 1.38020 1.45872 1.07433 1.57634 1.24715 1.21131 0.79894 1.00630 0.96724 1.22083 0.91597 0.99904 0.89554 0.86265 1.22846 0.95411 0.83310 1.01605 1.86467 1.30357 1.25571 1.97371 1.60083 1.58863 1.07496 1.03760 1.21630 1.00534 0.95718 0.88963 1.20902 0.83919 0.87357 0.85218 1.90518 1.55793 1.19674 1.84917 1.41910 1.55376 1.14315 1.09452 1.19592 1.38678 0.98023 0.89905 0.90522 1.25962 0.97648 0.96184 1.01268 1.69656 1.47659 1.09534 1.29226 0.85056 0.78698 0.77883 0.77134 1.19718 1.19523 1.19920 1.21289 0.96219 0.99904 0.95845 1.21578 0.93437 1.01548 0.97778 0.92012 0.92866 0.92120 0.91958 0.90514 0.91643 0.93386 0.75125 0.93394 0.90806 0.92545 0.90559 0.75325 0.83238 0.91585 0.86879 0.76941 0.91342 0.93363 0.91833 0.90922 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.09 -1.58 2.72 -10.80 -0.03 -1.61 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -2.03 5.20 30.60 0.16 -1.87 16 5 C -0.11 -2.40 5.10 30.60 0.16 -2.24 16 6 C -0.10 -2.07 2.53 -11.54 -0.03 -2.10 16 7 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 8 C 0.51 14.05 7.15 87.66 0.63 14.67 16 9 O -0.59 -20.67 15.98 -3.04 -0.05 -20.72 16 10 N -0.71 -17.58 5.28 -463.06 -2.45 -20.03 16 11 C 0.14 3.43 5.26 86.38 0.45 3.88 16 12 C 0.08 1.63 2.57 44.92 0.12 1.74 16 13 H 0.12 1.88 7.80 -2.39 -0.02 1.86 16 14 C 0.05 0.83 6.72 71.98 0.48 1.31 16 15 O -0.59 -12.19 12.05 -148.98 -1.80 -13.98 16 16 N -0.67 -19.29 5.31 -495.55 -2.63 -21.92 16 17 C 0.06 1.93 5.96 85.56 0.51 2.44 16 18 C 0.44 19.78 7.82 87.66 0.69 20.47 16 19 O -0.62 -33.60 15.78 -3.07 -0.05 -33.65 16 20 N -0.57 -28.19 5.29 -306.98 -1.62 -29.81 16 21 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 22 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 23 C -0.01 -0.56 5.50 84.92 0.47 -0.10 16 24 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 25 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 29 C -0.09 -1.96 4.49 30.59 0.14 -1.83 16 30 C -0.11 -1.66 5.21 30.59 0.16 -1.50 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 1.59 7.57 -2.39 -0.02 1.57 16 37 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.41 9.61 7.56 -92.71 -0.70 8.91 16 39 H 0.05 1.47 7.39 -2.39 -0.02 1.45 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 0.93 7.35 -2.39 -0.02 0.91 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.40 4.69 9.12 -74.05 -0.68 4.02 16 44 H 0.35 11.97 7.64 -89.70 -0.69 11.29 16 45 H 0.07 1.74 7.36 -2.38 -0.02 1.72 16 46 H 0.11 2.86 8.05 -2.39 -0.02 2.84 16 47 H 0.40 18.38 7.90 -92.71 -0.73 17.64 16 48 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 49 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 50 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 51 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -73.18 415.84 -2.76 -75.93 By element: Atomic # 1 Polarization: 55.58 SS G_CDS: -1.84 Total: 53.73 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.37 Total: 14.31 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -6.42 Total: -119.94 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -1.89 Total: -68.35 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -73.18 -2.76 -75.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571445541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.319 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds