Wall clock time and date at job start Wed Apr 1 2020 00:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99847 * 2 1 4 4 C 1.53002 * 109.46811 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47000 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47276 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99725 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99388 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46624 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00208 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00291 * 179.97438 * 11 10 9 14 14 C 1.47022 * 125.64528 * 0.02824 * 13 11 10 15 15 C 1.54327 * 107.27336 * 178.90269 * 14 13 11 16 16 H 1.08993 * 110.72079 * 96.16743 * 15 14 13 17 17 N 1.46496 * 110.72108 * 219.44674 * 15 14 13 18 18 C 1.36943 * 119.99804 * 273.54304 * 17 15 14 19 19 H 1.07998 * 119.99804 * 359.97438 * 18 17 15 20 20 C 1.38807 * 119.99940 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47363 * 119.99534 * 22 20 18 25 25 H 1.48506 * 109.47119 * 239.99567 * 22 20 18 26 26 C 1.55165 * 102.94078 * 337.80587 * 15 14 13 27 27 C 1.47425 * 125.65136 * 179.97438 * 13 11 10 28 28 H 1.08997 * 110.36655 * 85.33352 * 27 13 11 29 29 C 1.53003 * 110.36526 * 323.11398 * 27 13 11 30 30 H 1.09003 * 109.46693 * 299.99656 * 1 2 3 31 31 H 1.08998 * 109.47280 * 59.99628 * 1 2 3 32 32 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47116 * 60.00239 * 3 2 1 34 34 H 1.08996 * 109.47050 * 300.00006 * 3 2 1 35 35 H 1.08998 * 109.47202 * 60.00149 * 4 3 2 36 36 H 1.08996 * 109.47201 * 299.99770 * 4 3 2 37 37 H 1.09007 * 109.46485 * 59.99872 * 5 4 3 38 38 H 1.09000 * 109.47238 * 300.00610 * 5 4 3 39 39 H 0.96994 * 120.00005 * 0.02562 * 6 5 4 40 40 H 1.08998 * 109.47442 * 59.99876 * 9 7 6 41 41 H 1.08996 * 109.47022 * 299.99460 * 9 7 6 42 42 H 1.08998 * 109.47487 * 59.99690 * 10 9 7 43 43 H 1.09005 * 109.46906 * 299.99654 * 10 9 7 44 44 H 1.08997 * 109.88723 * 59.48678 * 14 13 11 45 45 H 1.08998 * 109.88661 * 298.31659 * 14 13 11 46 46 H 0.96996 * 120.00232 * 93.54399 * 17 15 14 47 47 H 0.97004 * 119.99895 * 180.02562 * 21 20 18 48 48 H 1.08995 * 111.00547 * 153.57467 * 26 15 14 49 49 H 1.09001 * 111.00003 * 277.43047 * 26 15 14 50 50 H 1.08997 * 109.47000 * 61.45857 * 29 27 13 51 51 H 1.09003 * 109.46650 * 181.45430 * 29 27 13 52 52 H 1.08994 * 109.47048 * 301.45295 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5825 0.0000 6 7 5.6182 2.4668 0.0000 7 6 6.3821 3.5772 0.0010 8 8 5.8605 4.6721 0.0015 9 6 7.8844 3.4582 0.0005 10 6 8.5067 4.8559 0.0025 11 6 10.0089 4.7370 0.0026 12 8 10.5306 3.6421 0.0006 13 7 10.7729 5.8473 0.0037 14 6 10.2743 7.2304 0.0056 15 6 11.5050 8.1611 0.0346 16 1 11.7644 8.4889 -0.9720 17 7 11.2647 9.3110 0.9100 18 6 10.6480 10.4298 0.4169 19 1 10.3391 10.4646 -0.6174 20 6 10.4208 11.5195 1.2462 21 7 10.7977 11.4773 2.5065 22 14 9.5789 13.0455 0.5737 23 1 9.2566 12.8412 -0.8615 24 1 8.3266 13.2948 1.3320 25 1 10.4846 14.2138 0.7158 26 6 12.6164 7.2494 0.6186 27 6 12.2469 5.8762 0.0045 28 1 12.6282 5.8012 -1.0139 29 6 12.8013 4.7389 0.8649 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8909 36 1 3.8575 0.6436 0.8891 37 1 3.8364 3.1228 0.8905 38 1 3.8358 3.1240 -0.8895 39 1 6.0354 1.5912 -0.0008 40 1 8.2058 2.9183 -0.8902 41 1 8.2063 2.9163 0.8897 42 1 8.1852 5.3955 0.8934 43 1 8.1848 5.3982 -0.8866 44 1 9.6592 7.4016 0.8890 45 1 9.6909 7.4154 -0.8963 46 1 11.5425 9.2798 1.8388 47 1 10.6386 12.2387 3.0861 48 1 13.6025 7.5736 0.2860 49 1 12.5638 7.2175 1.7069 50 1 12.4862 3.7819 0.4490 51 1 13.8901 4.7895 0.8761 52 1 12.4225 4.8353 1.8823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571489615.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:43 Heat of formation + Delta-G solvation = -117.047186 kcal Electronic energy + Delta-G solvation = -29251.083349 eV Core-core repulsion = 25057.619633 eV Total energy + Delta-G solvation = -4193.463716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.25664 -39.65579 -38.46533 -37.39895 -35.76372 -34.18360 -33.15817 -32.29759 -31.45113 -31.16316 -28.42485 -27.70625 -26.19606 -25.31340 -24.57114 -23.75401 -22.20554 -21.53717 -20.40911 -20.21081 -18.62474 -17.53724 -17.19965 -17.04881 -16.86071 -16.48871 -16.15536 -15.88157 -15.71128 -15.26537 -15.14413 -14.87163 -14.43876 -14.00010 -13.70630 -13.66507 -13.29526 -13.18656 -12.90799 -12.68849 -12.61977 -12.42423 -12.35462 -12.11731 -11.98532 -11.84395 -11.73321 -11.61597 -11.58343 -11.25860 -11.18945 -11.00459 -10.78098 -10.65938 -10.30036 -10.19273 -10.03188 -10.01534 -9.75712 -9.38341 -9.37855 -8.99761 -8.30043 -7.09770 -5.85091 -3.16063 2.47900 2.69371 2.84755 3.23154 3.39965 3.43766 3.46636 3.48135 4.39286 4.40431 4.52319 4.57251 4.60906 4.79976 4.84012 4.86743 4.94926 4.96739 4.98738 5.04309 5.12556 5.18419 5.22083 5.24586 5.27438 5.49218 5.53156 5.57488 5.58764 5.62617 5.69760 5.79661 5.84033 5.88901 5.92970 6.11686 6.12394 6.15049 6.24612 6.42561 6.47715 6.53466 6.61604 6.72348 6.87706 7.20005 7.64192 7.84627 8.01358 8.32096 8.39836 9.44555 9.98148 10.32888 11.36918 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.001939 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.511764 B =14437.540964 C =16849.105305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.131 4.131 5 C 0.121 3.879 6 N -0.735 5.735 7 C 0.513 3.487 8 O -0.535 6.535 9 C -0.121 4.121 10 C -0.122 4.122 11 C 0.529 3.471 12 O -0.557 6.557 13 N -0.608 5.608 14 C 0.072 3.928 15 C 0.172 3.828 16 H 0.065 0.935 17 N -0.713 5.713 18 C -0.248 4.248 19 H 0.073 0.927 20 C -0.008 4.008 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.136 4.136 27 C 0.136 3.864 28 H 0.071 0.929 29 C -0.162 4.162 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.387 0.613 47 H 0.256 0.744 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.056 0.944 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.842 -23.162 -5.501 26.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.388 5.388 7 C 0.300 3.700 8 O -0.411 6.411 9 C -0.162 4.162 10 C -0.162 4.162 11 C 0.318 3.682 12 O -0.437 6.437 13 N -0.341 5.341 14 C -0.054 4.054 15 C 0.059 3.941 16 H 0.083 0.917 17 N -0.353 5.353 18 C -0.379 4.379 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.175 4.175 27 C 0.033 3.967 28 H 0.089 0.911 29 C -0.220 4.220 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.221 0.779 47 H 0.066 0.934 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.102 0.898 51 H 0.075 0.925 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.972 -22.965 -5.589 26.494 hybrid contribution -0.620 0.819 0.044 1.028 sum -12.592 -22.145 -5.546 26.071 Atomic orbital electron populations 1.22761 0.80634 1.02916 1.00192 1.87855 1.20034 1.27860 1.95495 1.22387 0.93235 0.84879 1.00864 1.21679 0.93992 0.96991 1.04230 1.21162 0.79966 0.96296 1.02847 1.45951 1.06591 1.09417 1.76826 1.20830 0.89844 0.83970 0.75368 1.90750 1.75232 1.26497 1.48606 1.21351 0.90074 0.98953 1.05781 1.21338 0.91348 0.97487 1.06069 1.20205 0.88977 0.83067 0.75937 1.90590 1.74867 1.26260 1.51992 1.48642 1.07037 1.06693 1.71726 1.23351 1.00564 0.79726 1.01758 1.21176 0.90375 0.87119 0.95385 0.91688 1.42383 1.70707 1.11874 1.10372 1.19300 1.31023 0.92225 0.95381 0.90856 1.24769 1.01430 0.98547 0.95757 1.69671 1.52037 1.31197 1.04751 0.86118 0.78866 0.83137 0.78039 1.20430 1.21757 1.21804 1.23142 0.99776 0.93303 1.01291 1.21858 0.79799 0.95943 0.99138 0.91058 1.22157 1.00047 0.99905 0.99879 0.93899 0.93909 0.89494 0.92775 0.92810 0.90270 0.90251 0.91180 0.91212 0.76306 0.88104 0.88066 0.88106 0.88284 0.90682 0.92154 0.77853 0.93401 0.90204 0.90514 0.89798 0.92459 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.05 10.70 -35.23 -0.38 -3.42 16 3 C 0.06 0.39 5.94 37.16 0.22 0.61 16 4 C -0.13 -0.75 5.70 -26.73 -0.15 -0.90 16 5 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 6 N -0.73 -5.86 5.56 -60.29 -0.33 -6.19 16 7 C 0.51 5.79 7.83 -10.98 -0.09 5.70 16 8 O -0.53 -8.28 15.98 5.56 0.09 -8.19 16 9 C -0.12 -1.27 4.99 -27.88 -0.14 -1.41 16 10 C -0.12 -1.60 4.18 -27.89 -0.12 -1.71 16 11 C 0.53 8.01 7.63 -10.99 -0.08 7.92 16 12 O -0.56 -9.18 13.63 5.56 0.08 -9.11 16 13 N -0.61 -9.49 3.24 -163.05 -0.53 -10.02 16 14 C 0.07 1.23 6.24 -3.06 -0.02 1.21 16 15 C 0.17 3.19 3.59 -66.09 -0.24 2.96 16 16 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 17 N -0.71 -16.91 5.18 -51.65 -0.27 -17.18 16 18 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 22 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C -0.14 -2.14 6.11 -24.58 -0.15 -2.29 16 27 C 0.14 1.99 3.76 -66.42 -0.25 1.74 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 C -0.16 -2.25 8.71 37.16 0.32 -1.93 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.40 2.12 8.47 -40.82 -0.35 1.77 16 40 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 41 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.10 1.40 8.10 -51.93 -0.42 0.98 16 43 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 44 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.39 9.83 7.71 -40.82 -0.31 9.51 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 50 H 0.08 1.27 5.89 -51.93 -0.31 0.96 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 423.74 15.07 6.39 6.39 Total: -1.00 -33.18 423.74 -8.47 -41.64 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -9.36 Total: 8.80 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.15 Total: 6.99 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.41 Total: -59.96 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.21 Total: -20.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.18 -8.47 -41.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571489615.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.403 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds