Wall clock time and date at job start Wed Apr 1 2020 00:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99847 * 2 1 4 4 C 1.53002 * 109.46811 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47000 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47276 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99725 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99388 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46624 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00208 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00291 * 179.97438 * 11 10 9 14 14 C 1.47022 * 125.64528 * 0.02824 * 13 11 10 15 15 C 1.54327 * 107.27336 * 178.90269 * 14 13 11 16 16 H 1.08993 * 110.72079 * 96.16743 * 15 14 13 17 17 N 1.46496 * 110.72108 * 219.44674 * 15 14 13 18 18 C 1.36943 * 119.99804 * 273.54304 * 17 15 14 19 19 H 1.07998 * 119.99804 * 359.97438 * 18 17 15 20 20 C 1.38807 * 119.99940 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47363 * 119.99534 * 22 20 18 25 25 H 1.48506 * 109.47119 * 239.99567 * 22 20 18 26 26 C 1.55165 * 102.94078 * 337.80587 * 15 14 13 27 27 C 1.47425 * 125.65136 * 179.97438 * 13 11 10 28 28 H 1.08997 * 110.36655 * 85.33352 * 27 13 11 29 29 C 1.53003 * 110.36526 * 323.11398 * 27 13 11 30 30 H 1.09003 * 109.46693 * 299.99656 * 1 2 3 31 31 H 1.08998 * 109.47280 * 59.99628 * 1 2 3 32 32 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47116 * 60.00239 * 3 2 1 34 34 H 1.08996 * 109.47050 * 300.00006 * 3 2 1 35 35 H 1.08998 * 109.47202 * 60.00149 * 4 3 2 36 36 H 1.08996 * 109.47201 * 299.99770 * 4 3 2 37 37 H 1.09007 * 109.46485 * 59.99872 * 5 4 3 38 38 H 1.09000 * 109.47238 * 300.00610 * 5 4 3 39 39 H 0.96994 * 120.00005 * 0.02562 * 6 5 4 40 40 H 1.08998 * 109.47442 * 59.99876 * 9 7 6 41 41 H 1.08996 * 109.47022 * 299.99460 * 9 7 6 42 42 H 1.08998 * 109.47487 * 59.99690 * 10 9 7 43 43 H 1.09005 * 109.46906 * 299.99654 * 10 9 7 44 44 H 1.08997 * 109.88723 * 59.48678 * 14 13 11 45 45 H 1.08998 * 109.88661 * 298.31659 * 14 13 11 46 46 H 0.96996 * 120.00232 * 93.54399 * 17 15 14 47 47 H 0.97004 * 119.99895 * 180.02562 * 21 20 18 48 48 H 1.08995 * 111.00547 * 153.57467 * 26 15 14 49 49 H 1.09001 * 111.00003 * 277.43047 * 26 15 14 50 50 H 1.08997 * 109.47000 * 61.45857 * 29 27 13 51 51 H 1.09003 * 109.46650 * 181.45430 * 29 27 13 52 52 H 1.08994 * 109.47048 * 301.45295 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5825 0.0000 6 7 5.6182 2.4668 0.0000 7 6 6.3821 3.5772 0.0010 8 8 5.8605 4.6721 0.0015 9 6 7.8844 3.4582 0.0005 10 6 8.5067 4.8559 0.0025 11 6 10.0089 4.7370 0.0026 12 8 10.5306 3.6421 0.0006 13 7 10.7729 5.8473 0.0037 14 6 10.2743 7.2304 0.0056 15 6 11.5050 8.1611 0.0346 16 1 11.7644 8.4889 -0.9720 17 7 11.2647 9.3110 0.9100 18 6 10.6480 10.4298 0.4169 19 1 10.3391 10.4646 -0.6174 20 6 10.4208 11.5195 1.2462 21 7 10.7977 11.4773 2.5065 22 14 9.5789 13.0455 0.5737 23 1 9.2566 12.8412 -0.8615 24 1 8.3266 13.2948 1.3320 25 1 10.4846 14.2138 0.7158 26 6 12.6164 7.2494 0.6186 27 6 12.2469 5.8762 0.0045 28 1 12.6282 5.8012 -1.0139 29 6 12.8013 4.7389 0.8649 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8909 36 1 3.8575 0.6436 0.8891 37 1 3.8364 3.1228 0.8905 38 1 3.8358 3.1240 -0.8895 39 1 6.0354 1.5912 -0.0008 40 1 8.2058 2.9183 -0.8902 41 1 8.2063 2.9163 0.8897 42 1 8.1852 5.3955 0.8934 43 1 8.1848 5.3982 -0.8866 44 1 9.6592 7.4016 0.8890 45 1 9.6909 7.4154 -0.8963 46 1 11.5425 9.2798 1.8388 47 1 10.6386 12.2387 3.0861 48 1 13.6025 7.5736 0.2860 49 1 12.5638 7.2175 1.7069 50 1 12.4862 3.7819 0.4490 51 1 13.8901 4.7895 0.8761 52 1 12.4225 4.8353 1.8823 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571489615.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:36 Heat of formation + Delta-G solvation = -140.438612 kcal Electronic energy + Delta-G solvation = -29252.097678 eV Core-core repulsion = 25057.619633 eV Total energy + Delta-G solvation = -4194.478045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.39628 -40.67906 -38.98525 -38.73027 -36.50065 -35.95716 -34.20676 -33.27373 -33.02663 -32.25560 -30.07561 -28.28885 -26.99166 -26.55651 -25.83151 -25.14604 -22.88212 -22.64648 -21.76704 -21.21245 -19.86581 -19.19975 -18.42881 -17.73102 -17.64656 -17.39595 -17.20423 -16.85575 -16.60617 -16.44401 -16.11228 -15.75042 -15.60523 -15.41739 -15.14952 -14.79597 -14.66156 -14.35799 -14.05614 -13.92692 -13.47339 -13.32356 -13.31430 -13.10831 -13.02085 -12.93443 -12.84165 -12.82919 -12.72914 -12.32112 -12.22090 -12.10335 -12.08460 -12.06977 -12.05664 -11.70630 -11.52002 -11.02664 -10.99083 -10.65568 -10.55469 -10.14792 -9.59853 -9.06524 -7.94828 -5.24600 1.49263 1.50412 1.58937 1.59549 1.61799 1.85637 2.20879 2.56952 2.87907 3.37138 3.40277 3.69049 3.84106 3.90184 3.91520 3.92320 4.02413 4.08635 4.13664 4.19701 4.22466 4.33796 4.41778 4.48558 4.49933 4.51324 4.53948 4.54979 4.62018 4.68805 4.76353 4.82093 4.84491 4.85363 4.90181 4.94967 5.07139 5.08838 5.14413 5.18338 5.28216 5.35174 5.40652 5.55109 5.57464 6.17737 6.26485 6.49035 6.57214 7.15619 7.21345 7.34082 8.05993 8.29338 9.28307 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.001939 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.511764 B =14437.540964 C =16849.105305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.060 3.940 4 C -0.119 4.119 5 C 0.122 3.878 6 N -0.718 5.718 7 C 0.514 3.486 8 O -0.583 6.583 9 C -0.112 4.112 10 C -0.119 4.119 11 C 0.530 3.470 12 O -0.566 6.566 13 N -0.611 5.611 14 C 0.087 3.913 15 C 0.163 3.837 16 H 0.071 0.929 17 N -0.725 5.725 18 C -0.241 4.241 19 H 0.081 0.919 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.297 1.297 25 H -0.294 1.294 26 C -0.125 4.125 27 C 0.135 3.865 28 H 0.087 0.913 29 C -0.153 4.153 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.418 0.582 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.375 0.625 47 H 0.250 0.750 48 H 0.097 0.903 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.888 -24.812 -6.891 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.301 3.699 8 O -0.463 6.463 9 C -0.152 4.152 10 C -0.159 4.159 11 C 0.320 3.680 12 O -0.447 6.447 13 N -0.344 5.344 14 C -0.039 4.039 15 C 0.053 3.947 16 H 0.089 0.911 17 N -0.364 5.364 18 C -0.373 4.373 19 H 0.099 0.901 20 C -0.264 4.264 21 N -0.618 5.618 22 Si 0.798 3.202 23 H -0.189 1.189 24 H -0.225 1.225 25 H -0.222 1.222 26 C -0.163 4.163 27 C 0.033 3.967 28 H 0.105 0.895 29 C -0.211 4.211 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.255 0.745 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.208 0.792 47 H 0.059 0.941 48 H 0.115 0.885 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.098 0.902 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.018 -24.708 -7.028 28.360 hybrid contribution -0.607 1.205 0.441 1.420 sum -12.625 -23.502 -6.587 27.479 Atomic orbital electron populations 1.22925 0.79448 1.03856 1.00864 1.87811 1.21474 1.28608 1.95645 1.22452 0.93360 0.84583 1.01333 1.21553 0.93733 0.95674 1.04711 1.21167 0.79519 0.97335 1.02133 1.45838 1.06827 1.09431 1.75042 1.20942 0.90260 0.83886 0.74769 1.90735 1.76001 1.28357 1.51182 1.21299 0.89344 0.97503 1.07077 1.21300 0.90056 0.99129 1.05387 1.20477 0.89598 0.82642 0.75308 1.90587 1.75261 1.26429 1.52414 1.48671 1.07636 1.06107 1.71988 1.22937 0.99438 0.80460 1.01077 1.21387 0.92006 0.86310 0.94966 0.91081 1.42520 1.70644 1.12814 1.10438 1.19685 1.29324 0.92747 0.95523 0.90093 1.25514 1.03187 1.01516 0.96159 1.69814 1.54233 1.31740 1.05968 0.85149 0.77311 0.79730 0.78019 1.18852 1.22481 1.22170 1.23053 0.99587 0.93170 1.00538 1.21973 0.79225 0.95457 1.00073 0.89475 1.22068 1.01454 0.98825 0.98753 0.93282 0.93191 0.88515 0.92440 0.92301 0.89655 0.89827 0.92089 0.91838 0.74452 0.86463 0.86959 0.89329 0.88440 0.92890 0.91451 0.79201 0.94077 0.88456 0.91615 0.90733 0.90157 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -5.97 10.70 -148.98 -1.59 -7.57 16 3 C 0.06 0.67 5.94 71.98 0.43 1.10 16 4 C -0.12 -1.19 5.70 30.60 0.17 -1.01 16 5 C 0.12 1.71 5.67 86.38 0.49 2.20 16 6 N -0.72 -10.42 5.56 -463.04 -2.57 -12.99 16 7 C 0.51 11.15 7.83 87.66 0.69 11.83 16 8 O -0.58 -18.13 15.98 -3.02 -0.05 -18.18 16 9 C -0.11 -2.18 4.99 29.85 0.15 -2.03 16 10 C -0.12 -3.02 4.18 29.85 0.12 -2.90 16 11 C 0.53 15.37 7.63 87.66 0.67 16.04 16 12 O -0.57 -17.63 13.63 -3.04 -0.04 -17.67 16 13 N -0.61 -18.34 3.24 -788.16 -2.56 -20.90 16 14 C 0.09 2.94 6.24 86.73 0.54 3.48 16 15 C 0.16 5.95 3.59 46.18 0.17 6.11 16 16 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 17 N -0.73 -34.47 5.18 -317.33 -1.64 -36.11 16 18 C -0.24 -12.75 9.98 84.03 0.84 -11.91 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 21 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 22 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 C -0.12 -3.74 6.11 31.99 0.20 -3.54 16 27 C 0.14 3.70 3.76 45.47 0.17 3.87 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 C -0.15 -3.94 8.71 71.98 0.63 -3.31 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.42 3.47 8.47 -92.71 -0.79 2.68 16 40 H 0.12 1.92 8.10 -2.39 -0.02 1.90 16 41 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 42 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 43 H 0.10 2.52 8.10 -2.38 -0.02 2.50 16 44 H 0.05 2.03 8.03 -2.39 -0.02 2.01 16 45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.38 19.42 7.71 -92.71 -0.72 18.71 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 49 H 0.07 2.13 7.92 -2.39 -0.02 2.11 16 50 H 0.07 2.10 5.89 -2.39 -0.01 2.08 16 51 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.08 423.74 0.24 -70.85 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.59 Total: 35.05 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 6.97 Total: 17.88 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -6.49 Total: -127.65 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -1.68 Total: -43.42 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.08 0.24 -70.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571489615.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.592 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds