Wall clock time and date at job start Wed Apr 1 2020 00:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99848 * 2 1 4 4 C 1.52999 * 109.47023 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47309 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47416 * 180.02562 * 5 4 3 7 7 C 1.34779 * 120.00195 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00041 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99956 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47176 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47634 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99536 * 0.02562 * 11 10 9 13 13 N 1.34766 * 120.00502 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.64926 * 0.03854 * 13 11 10 15 15 C 1.54325 * 107.27089 * 181.02697 * 14 13 11 16 16 H 1.09006 * 110.86699 * 263.75598 * 15 14 13 17 17 N 1.46504 * 110.71678 * 140.55927 * 15 14 13 18 18 C 1.36935 * 119.99849 * 91.47720 * 17 15 14 19 19 H 1.07997 * 120.00561 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99619 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00303 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 119.99829 * 22 20 18 25 25 H 1.48498 * 109.47295 * 240.00436 * 22 20 18 26 26 C 1.55152 * 102.94540 * 22.19449 * 15 14 13 27 27 C 1.47429 * 125.65317 * 180.02562 * 13 11 10 28 28 H 1.09003 * 110.36522 * 274.74369 * 27 13 11 29 29 C 1.53004 * 110.45764 * 37.01445 * 27 13 11 30 30 H 1.08992 * 109.47557 * 300.00269 * 1 2 3 31 31 H 1.09004 * 109.47037 * 60.00316 * 1 2 3 32 32 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47174 * 60.00126 * 3 2 1 34 34 H 1.08997 * 109.47287 * 299.99508 * 3 2 1 35 35 H 1.09007 * 109.46990 * 60.00528 * 4 3 2 36 36 H 1.09001 * 109.47907 * 300.00472 * 4 3 2 37 37 H 1.09002 * 109.47343 * 60.00415 * 5 4 3 38 38 H 1.08997 * 109.47160 * 300.00293 * 5 4 3 39 39 H 0.97003 * 119.99877 * 0.02562 * 6 5 4 40 40 H 1.09002 * 109.47598 * 59.99222 * 9 7 6 41 41 H 1.08999 * 109.47321 * 299.99047 * 9 7 6 42 42 H 1.09002 * 109.47343 * 59.99872 * 10 9 7 43 43 H 1.08999 * 109.47463 * 300.00190 * 10 9 7 44 44 H 1.08996 * 109.87779 * 61.60557 * 14 13 11 45 45 H 1.08999 * 109.88014 * 300.44232 * 14 13 11 46 46 H 0.96996 * 119.99617 * 271.47406 * 17 15 14 47 47 H 0.97000 * 119.99517 * 0.02562 * 21 20 18 48 48 H 1.08995 * 111.00862 * 82.56872 * 26 15 14 49 49 H 1.09002 * 111.00248 * 206.42649 * 26 15 14 50 50 H 1.08994 * 109.46915 * 175.46431 * 29 27 13 51 51 H 1.08994 * 109.47156 * 295.47240 * 29 27 13 52 52 H 1.08998 * 109.46845 * 55.47121 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5823 0.0000 6 7 5.6181 2.4667 0.0000 7 6 6.3821 3.5771 0.0000 8 8 5.8605 4.6720 -0.0005 9 6 7.8843 3.4581 -0.0006 10 6 8.5067 4.8557 -0.0011 11 6 10.0090 4.7368 -0.0011 12 8 10.5306 3.6418 -0.0011 13 7 10.7729 5.8471 -0.0009 14 6 10.2743 7.2303 -0.0001 15 6 11.5051 8.1609 -0.0267 16 1 11.7655 8.4891 0.9796 17 7 11.2651 9.3127 -0.8997 18 6 10.7427 10.4675 -0.3814 19 1 10.5071 10.5292 0.6708 20 6 10.5158 11.5590 -1.2085 21 7 10.8033 11.4841 -2.4907 22 14 9.8024 13.1341 -0.5018 23 1 9.5695 12.9621 0.9548 24 1 10.7556 14.2515 -0.7215 25 1 8.5157 13.4411 -1.1764 26 6 12.6167 7.2505 -0.6122 27 6 12.2469 5.8760 -0.0014 28 1 12.6281 5.7986 1.0168 29 6 12.8037 4.7423 -0.8650 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8901 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6436 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 3.8358 3.1238 0.8896 38 1 3.8364 3.1227 -0.8904 39 1 6.0353 1.5910 0.0000 40 1 8.2057 2.9172 -0.8907 41 1 8.2063 2.9171 0.8892 42 1 8.1854 5.3969 0.8889 43 1 8.1847 5.3965 -0.8910 44 1 9.6906 7.4132 0.9020 45 1 9.6596 7.4033 -0.8834 46 1 11.4764 9.2573 -1.8447 47 1 11.1734 10.6661 -2.8578 48 1 12.5645 7.2208 -1.7005 49 1 13.6027 7.5739 -0.2784 50 1 13.8890 4.8267 -0.9196 51 1 12.5355 3.7831 -0.4224 52 1 12.3832 4.8098 -1.8683 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571489616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:52 Heat of formation + Delta-G solvation = -141.547943 kcal Electronic energy + Delta-G solvation = -29274.203902 eV Core-core repulsion = 25079.677753 eV Total energy + Delta-G solvation = -4194.526149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.45557 -40.71664 -39.00575 -38.82200 -36.52324 -36.30264 -34.24930 -33.29516 -33.05072 -32.31038 -29.89441 -28.30503 -27.02267 -26.61134 -25.72909 -25.17766 -22.98340 -22.69381 -21.93141 -21.24093 -19.95039 -19.40440 -18.50121 -17.78831 -17.66491 -17.42937 -17.23888 -16.85452 -16.70461 -16.48704 -16.09582 -15.91602 -15.75423 -15.49810 -15.20732 -14.91972 -14.70603 -14.38709 -14.10311 -13.97369 -13.54552 -13.36202 -13.34076 -13.18009 -13.05652 -12.91763 -12.76367 -12.71590 -12.63730 -12.40813 -12.25694 -12.09823 -12.07887 -12.06862 -11.84134 -11.76338 -11.22970 -11.03827 -11.01755 -10.66298 -10.63395 -10.16843 -9.67658 -9.18039 -8.38487 -5.34940 1.55903 1.56355 1.60657 1.71015 1.80278 1.82653 2.16572 2.71303 2.86659 3.32166 3.37709 3.61576 3.73480 3.79856 3.87390 3.91047 3.97211 4.03723 4.11536 4.12517 4.16664 4.23686 4.39340 4.40707 4.43651 4.47876 4.48987 4.54271 4.57233 4.67332 4.67906 4.75236 4.77243 4.82636 4.84828 4.90226 5.05386 5.05953 5.07443 5.09063 5.21471 5.24832 5.38548 5.48604 5.62557 6.17030 6.46359 6.49947 6.50412 7.05854 7.10230 7.18761 7.96130 8.07128 9.13030 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.001916 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.620593 B =14607.361976 C =16955.824886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.060 3.940 4 C -0.119 4.119 5 C 0.122 3.878 6 N -0.718 5.718 7 C 0.514 3.486 8 O -0.583 6.583 9 C -0.112 4.112 10 C -0.118 4.118 11 C 0.530 3.470 12 O -0.564 6.564 13 N -0.611 5.611 14 C 0.089 3.911 15 C 0.168 3.832 16 H 0.071 0.929 17 N -0.736 5.736 18 C -0.332 4.332 19 H 0.072 0.928 20 C -0.101 4.101 21 N -0.976 5.976 22 Si 1.129 2.871 23 H -0.270 1.270 24 H -0.292 1.292 25 H -0.295 1.295 26 C -0.127 4.127 27 C 0.135 3.865 28 H 0.087 0.913 29 C -0.150 4.150 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.418 0.582 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.362 0.638 47 H 0.245 0.755 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.072 0.928 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 -24.935 7.287 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.301 3.699 8 O -0.463 6.463 9 C -0.152 4.152 10 C -0.159 4.159 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.344 5.344 14 C -0.037 4.037 15 C 0.058 3.942 16 H 0.089 0.911 17 N -0.377 5.377 18 C -0.463 4.463 19 H 0.090 0.910 20 C -0.292 4.292 21 N -0.624 5.624 22 Si 0.954 3.046 23 H -0.194 1.194 24 H -0.219 1.219 25 H -0.222 1.222 26 C -0.165 4.165 27 C 0.033 3.967 28 H 0.105 0.895 29 C -0.207 4.207 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.195 0.805 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.099 0.901 51 H 0.091 0.909 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.695 -23.396 7.184 27.571 hybrid contribution 0.322 -1.314 -0.288 1.383 sum -12.373 -24.710 6.896 28.482 Atomic orbital electron populations 1.22924 0.79436 1.03863 1.00871 1.87808 1.21484 1.28601 1.95644 1.22450 0.93344 0.84593 1.01340 1.21552 0.93751 0.95655 1.04715 1.21169 0.79479 0.97359 1.02148 1.45838 1.06847 1.09416 1.74997 1.20927 0.90235 0.83901 0.74793 1.90737 1.76004 1.28360 1.51207 1.21297 0.89397 0.97413 1.07114 1.21300 0.89982 0.99217 1.05355 1.20491 0.89615 0.82618 0.75278 1.90605 1.75314 1.26329 1.52256 1.48666 1.07607 1.06025 1.72152 1.22879 0.99271 0.80569 1.01016 1.21321 0.92043 0.85995 0.94840 0.91074 1.42532 1.76798 1.11022 1.07369 1.20457 1.37551 0.92872 0.95443 0.90999 1.27107 1.01891 1.05087 0.95138 1.70938 1.48652 1.29236 1.13526 0.82592 0.75359 0.71965 0.74639 1.19441 1.21872 1.22173 1.23086 0.99619 0.93343 1.00501 1.21962 0.79258 0.95389 1.00116 0.89495 1.22022 1.01363 0.98615 0.98722 0.93185 0.93277 0.88511 0.92294 0.92435 0.89824 0.89653 0.91824 0.92074 0.74439 0.86918 0.86441 0.88478 0.89352 0.91496 0.93019 0.80547 0.94398 0.91631 0.88553 0.90106 0.90882 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -5.95 10.70 -148.98 -1.59 -7.54 16 3 C 0.06 0.66 5.94 71.98 0.43 1.09 16 4 C -0.12 -1.18 5.70 30.59 0.17 -1.00 16 5 C 0.12 1.70 5.67 86.38 0.49 2.19 16 6 N -0.72 -10.34 5.56 -463.06 -2.57 -12.92 16 7 C 0.51 11.11 7.83 87.66 0.69 11.80 16 8 O -0.58 -18.12 15.98 -3.04 -0.05 -18.16 16 9 C -0.11 -2.17 4.99 29.85 0.15 -2.02 16 10 C -0.12 -3.02 4.18 29.85 0.12 -2.89 16 11 C 0.53 15.37 7.63 87.66 0.67 16.04 16 12 O -0.56 -17.54 13.71 -3.07 -0.04 -17.58 16 13 N -0.61 -18.41 3.24 -788.16 -2.56 -20.96 16 14 C 0.09 3.03 6.24 86.73 0.54 3.57 16 15 C 0.17 6.22 3.61 46.18 0.17 6.39 16 16 H 0.07 2.62 8.09 -2.38 -0.02 2.60 16 17 N -0.74 -35.21 5.15 -317.32 -1.63 -36.84 16 18 C -0.33 -17.89 9.96 84.03 0.84 -17.05 16 19 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 20 C -0.10 -5.71 5.50 84.86 0.47 -5.24 16 21 N -0.98 -60.08 13.70 21.65 0.30 -59.79 16 22 Si 1.13 51.33 29.92 68.60 2.05 53.38 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 C -0.13 -3.82 6.13 31.98 0.20 -3.62 16 27 C 0.14 3.71 3.76 45.46 0.17 3.88 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 C -0.15 -3.82 8.60 71.98 0.62 -3.20 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.42 3.42 8.47 -92.71 -0.79 2.64 16 40 H 0.11 1.95 8.10 -2.39 -0.02 1.93 16 41 H 0.12 1.92 8.10 -2.39 -0.02 1.90 16 42 H 0.10 2.52 8.10 -2.39 -0.02 2.50 16 43 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 46 H 0.36 18.29 6.59 -92.71 -0.61 17.68 16 47 H 0.25 15.02 6.77 -92.71 -0.63 14.39 16 48 H 0.06 2.11 7.92 -2.39 -0.02 2.09 16 49 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 50 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.07 2.03 6.10 -2.39 -0.01 2.01 16 52 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -73.50 422.22 0.52 -72.98 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.35 Total: 36.03 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 6.97 Total: 11.40 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -6.47 Total: -130.51 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.69 Total: -43.29 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -73.50 0.52 -72.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571489616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.566 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds