Wall clock time and date at job start Wed Apr 1 2020 00:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00028 * 2 1 4 4 C 1.52996 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47133 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47083 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00298 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99564 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46982 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47180 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00375 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00233 * 180.02562 * 11 10 9 14 14 C 1.47751 * 125.81876 * 359.90551 * 13 11 10 15 15 C 1.54904 * 104.83985 * 155.83199 * 14 13 11 16 16 H 1.09007 * 111.00609 * 155.16817 * 15 14 13 17 17 N 1.46504 * 111.00547 * 279.01714 * 15 14 13 18 18 C 1.36937 * 119.99711 * 267.19825 * 17 15 14 19 19 H 1.07997 * 120.00447 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99578 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00164 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00046 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46886 * 90.00220 * 22 20 18 24 24 H 1.48500 * 109.46973 * 209.99654 * 22 20 18 25 25 H 1.48496 * 109.47498 * 330.00015 * 22 20 18 26 26 C 1.55158 * 101.58496 * 37.09084 * 15 14 13 27 27 C 1.47023 * 125.65235 * 179.97438 * 13 11 10 28 28 H 1.09000 * 109.87725 * 300.59129 * 27 13 11 29 29 C 1.52997 * 109.88230 * 61.60280 * 27 13 11 30 30 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47202 * 300.00549 * 1 2 3 32 32 H 1.08996 * 109.46535 * 60.00824 * 1 2 3 33 33 H 1.08995 * 109.47497 * 59.99023 * 3 2 1 34 34 H 1.09005 * 109.46665 * 299.99415 * 3 2 1 35 35 H 1.08999 * 109.47205 * 59.99854 * 4 3 2 36 36 H 1.08995 * 109.47343 * 299.99528 * 4 3 2 37 37 H 1.08999 * 109.46704 * 60.00147 * 5 4 3 38 38 H 1.09005 * 109.47194 * 300.00143 * 5 4 3 39 39 H 0.96998 * 119.99867 * 0.02562 * 6 5 4 40 40 H 1.08999 * 109.47155 * 60.00679 * 9 7 6 41 41 H 1.08995 * 109.47543 * 300.00260 * 9 7 6 42 42 H 1.09008 * 109.46968 * 60.00260 * 10 9 7 43 43 H 1.09005 * 109.47194 * 300.00296 * 10 9 7 44 44 H 1.08994 * 110.29105 * 37.02489 * 14 13 11 45 45 H 1.09003 * 110.52615 * 274.75595 * 14 13 11 46 46 H 0.96999 * 120.00156 * 87.19480 * 17 15 14 47 47 H 0.97001 * 120.00322 * 179.97438 * 21 20 18 48 48 H 1.08995 * 110.72121 * 206.13300 * 26 15 14 49 49 H 1.09003 * 110.87079 * 82.93193 * 26 15 14 50 50 H 1.09002 * 109.47153 * 178.28453 * 29 27 13 51 51 H 1.09001 * 109.46832 * 58.28643 * 29 27 13 52 52 H 1.09004 * 109.47261 * 298.28625 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6182 2.4668 0.0012 7 6 6.3821 3.5772 0.0004 8 8 5.8605 4.6720 -0.0009 9 6 7.8844 3.4581 0.0023 10 6 8.5067 4.8559 0.0015 11 6 10.0089 4.7369 0.0027 12 8 10.5306 3.6420 0.0045 13 7 10.7729 5.8473 0.0028 14 6 10.2761 7.2387 -0.0001 15 6 11.4279 8.0726 0.6142 16 1 11.3808 9.1093 0.2806 17 7 11.4117 7.9928 2.0770 18 6 10.7412 8.9377 2.8069 19 1 10.2246 9.7420 2.3043 20 6 10.7254 8.8617 4.1928 21 7 10.0814 9.7701 4.8944 22 14 11.6184 7.4701 5.0621 23 1 13.0163 7.8816 5.3485 24 1 10.9239 7.1563 6.3367 25 1 11.6249 6.2665 4.1925 26 6 12.6755 7.3571 0.0320 27 6 12.2429 5.8761 0.0045 28 1 12.6226 5.3624 0.8877 29 6 12.7779 5.2013 -1.2601 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.6885 1.8465 0.8898 34 1 1.6886 1.8463 -0.8901 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 3.8358 3.1238 0.8896 38 1 3.8364 3.1228 -0.8905 39 1 6.0353 1.5910 0.0019 40 1 8.2070 2.9160 -0.8866 41 1 8.2051 2.9186 0.8933 42 1 8.1840 5.3977 0.8906 43 1 8.1860 5.3959 -0.8894 44 1 9.3790 7.3211 0.6134 45 1 10.0700 7.5688 -1.0184 46 1 11.8760 7.2706 2.5285 47 1 10.0701 9.7168 5.8629 48 1 13.5382 7.4947 0.6838 49 1 12.8935 7.7143 -0.9745 50 1 13.8667 5.2533 -1.2668 51 1 12.3844 5.7122 -2.1388 52 1 12.4640 4.1575 -1.2756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571489617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:16 Heat of formation + Delta-G solvation = -115.368354 kcal Electronic energy + Delta-G solvation = -29711.160523 eV Core-core repulsion = 25517.769607 eV Total energy + Delta-G solvation = -4193.390917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21224 -39.63158 -38.43820 -37.51479 -35.72135 -34.11789 -33.07717 -32.24980 -31.53367 -31.20598 -28.97940 -27.68549 -26.17054 -25.54870 -24.54049 -23.43328 -22.19277 -21.73499 -20.43487 -19.96928 -18.57666 -17.76345 -17.48307 -17.04593 -16.82654 -16.47393 -16.13688 -15.84183 -15.71885 -15.22379 -15.13218 -14.60637 -14.44125 -14.05846 -13.92735 -13.65695 -13.37197 -13.05595 -12.90181 -12.73043 -12.51090 -12.39618 -12.35238 -12.30719 -11.98080 -11.91665 -11.89644 -11.58534 -11.54818 -11.40624 -11.17286 -11.07219 -10.84692 -10.64306 -10.36696 -10.16383 -10.09106 -9.98553 -9.64513 -9.55025 -9.33438 -9.06842 -8.32453 -7.34999 -5.83295 -3.20235 2.52606 2.73407 2.90483 3.26348 3.34727 3.39073 3.43112 3.47412 4.43580 4.43885 4.54189 4.60307 4.63860 4.78380 4.86596 4.89561 4.97501 4.98464 5.01255 5.04856 5.09271 5.14223 5.20559 5.22929 5.28520 5.30632 5.50726 5.57148 5.58120 5.61227 5.66367 5.71125 5.77338 5.83996 5.92603 5.97465 6.04966 6.13760 6.17004 6.28942 6.33279 6.49807 6.55453 6.64541 6.72218 7.24430 7.86010 7.91389 8.05760 8.35454 8.43308 9.12702 9.85373 10.03897 11.34360 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.002145 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.061030 B =13051.716244 C =14645.222955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.131 4.131 5 C 0.121 3.879 6 N -0.735 5.735 7 C 0.514 3.486 8 O -0.535 6.535 9 C -0.122 4.122 10 C -0.121 4.121 11 C 0.531 3.469 12 O -0.559 6.559 13 N -0.601 5.601 14 C 0.068 3.932 15 C 0.174 3.826 16 H 0.084 0.916 17 N -0.736 5.736 18 C -0.250 4.250 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.929 5.929 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.142 4.142 27 C 0.135 3.865 28 H 0.069 0.931 29 C -0.159 4.159 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.403 0.597 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.363 0.637 47 H 0.260 0.740 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.060 0.940 51 H 0.053 0.947 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 -17.149 -14.656 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.388 5.388 7 C 0.301 3.699 8 O -0.411 6.411 9 C -0.162 4.162 10 C -0.162 4.162 11 C 0.320 3.680 12 O -0.439 6.439 13 N -0.334 5.334 14 C -0.058 4.058 15 C 0.062 3.938 16 H 0.102 0.898 17 N -0.377 5.377 18 C -0.380 4.380 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.576 5.576 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.181 4.181 27 C 0.032 3.968 28 H 0.087 0.913 29 C -0.217 4.217 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.196 0.804 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.079 0.921 51 H 0.073 0.927 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.696 -16.917 -14.541 24.739 hybrid contribution 0.413 -1.156 0.838 1.486 sum -10.283 -18.073 -13.703 24.903 Atomic orbital electron populations 1.22757 0.80656 1.02902 1.00183 1.87854 1.20017 1.27874 1.95492 1.22386 0.93238 0.84867 1.00860 1.21678 0.93985 0.97014 1.04228 1.21160 0.79970 0.96282 1.02839 1.45950 1.06587 1.09420 1.76838 1.20805 0.89804 0.83971 0.75322 1.90740 1.75230 1.26484 1.48641 1.21353 0.90126 0.98994 1.05755 1.21332 0.91203 0.97549 1.06072 1.20184 0.89019 0.82985 0.75823 1.90636 1.75261 1.26142 1.51818 1.48548 1.06589 1.06579 1.71696 1.23464 1.01286 0.80905 1.00122 1.21294 0.90556 0.97083 0.84848 0.89838 1.42697 1.63379 1.31394 1.00245 1.19068 1.25805 1.04108 0.89013 0.88887 1.24659 0.99919 0.97937 0.96135 1.69691 1.46317 1.35647 1.05928 0.86612 0.79828 0.82887 0.79585 1.20975 1.21674 1.20324 1.23117 0.99746 0.93418 1.01796 1.21486 0.80359 0.96843 0.98154 0.91261 1.22122 1.00555 1.01817 0.97169 0.89509 0.93887 0.93933 0.92753 0.92827 0.90307 0.90227 0.91142 0.91241 0.76309 0.88196 0.88038 0.87755 0.88420 0.89685 0.92091 0.80443 0.92948 0.89913 0.90319 0.92079 0.92744 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.21 10.70 -35.23 -0.38 -3.58 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.13 -0.82 5.70 -26.73 -0.15 -0.97 16 5 C 0.12 0.98 5.67 -4.04 -0.02 0.95 16 6 N -0.73 -6.41 5.56 -60.29 -0.33 -6.75 16 7 C 0.51 6.21 7.83 -10.99 -0.09 6.13 16 8 O -0.53 -8.58 15.98 5.56 0.09 -8.50 16 9 C -0.12 -1.41 4.99 -27.88 -0.14 -1.55 16 10 C -0.12 -1.70 4.01 -27.88 -0.11 -1.81 16 11 C 0.53 8.65 7.64 -10.99 -0.08 8.57 16 12 O -0.56 -10.15 15.02 5.56 0.08 -10.06 16 13 N -0.60 -9.69 3.08 -162.76 -0.50 -10.19 16 14 C 0.07 1.08 6.41 -2.35 -0.02 1.06 16 15 C 0.17 3.02 3.72 -65.78 -0.24 2.77 16 16 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 17 N -0.74 -16.44 5.04 -51.35 -0.26 -16.70 16 18 C -0.25 -6.73 10.44 -15.06 -0.16 -6.89 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 21 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 22 Si 0.88 22.04 27.73 -169.99 -4.71 17.33 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 26 C -0.14 -2.01 6.08 -24.90 -0.15 -2.16 16 27 C 0.13 2.05 3.44 -66.96 -0.23 1.82 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 C -0.16 -2.06 9.10 37.16 0.34 -1.72 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 2.44 8.47 -40.82 -0.35 2.10 16 40 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.10 1.62 7.82 -51.92 -0.41 1.22 16 43 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 44 H 0.08 1.51 7.50 -51.93 -0.39 1.12 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.36 8.28 5.73 -40.82 -0.23 8.04 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.08 0.92 7.85 -51.93 -0.41 0.52 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 52 H 0.07 0.96 6.89 -51.93 -0.36 0.61 16 LS Contribution 422.29 15.07 6.36 6.36 Total: -1.00 -35.04 422.29 -8.03 -43.06 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -9.33 Total: 8.58 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 0.18 Total: 8.31 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.32 Total: -61.50 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.20 Total: -22.14 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.04 -8.03 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571489617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.304 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds