Wall clock time and date at job start Wed Apr 1 2020 00:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00028 * 2 1 4 4 C 1.52996 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47133 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47083 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00298 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99564 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46982 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47180 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00375 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00233 * 180.02562 * 11 10 9 14 14 C 1.47751 * 125.81876 * 359.90551 * 13 11 10 15 15 C 1.54904 * 104.83985 * 155.83199 * 14 13 11 16 16 H 1.09007 * 111.00609 * 155.16817 * 15 14 13 17 17 N 1.46504 * 111.00547 * 279.01714 * 15 14 13 18 18 C 1.36937 * 119.99711 * 267.19825 * 17 15 14 19 19 H 1.07997 * 120.00447 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99578 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00164 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00046 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46886 * 90.00220 * 22 20 18 24 24 H 1.48500 * 109.46973 * 209.99654 * 22 20 18 25 25 H 1.48496 * 109.47498 * 330.00015 * 22 20 18 26 26 C 1.55158 * 101.58496 * 37.09084 * 15 14 13 27 27 C 1.47023 * 125.65235 * 179.97438 * 13 11 10 28 28 H 1.09000 * 109.87725 * 300.59129 * 27 13 11 29 29 C 1.52997 * 109.88230 * 61.60280 * 27 13 11 30 30 H 1.08998 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47202 * 300.00549 * 1 2 3 32 32 H 1.08996 * 109.46535 * 60.00824 * 1 2 3 33 33 H 1.08995 * 109.47497 * 59.99023 * 3 2 1 34 34 H 1.09005 * 109.46665 * 299.99415 * 3 2 1 35 35 H 1.08999 * 109.47205 * 59.99854 * 4 3 2 36 36 H 1.08995 * 109.47343 * 299.99528 * 4 3 2 37 37 H 1.08999 * 109.46704 * 60.00147 * 5 4 3 38 38 H 1.09005 * 109.47194 * 300.00143 * 5 4 3 39 39 H 0.96998 * 119.99867 * 0.02562 * 6 5 4 40 40 H 1.08999 * 109.47155 * 60.00679 * 9 7 6 41 41 H 1.08995 * 109.47543 * 300.00260 * 9 7 6 42 42 H 1.09008 * 109.46968 * 60.00260 * 10 9 7 43 43 H 1.09005 * 109.47194 * 300.00296 * 10 9 7 44 44 H 1.08994 * 110.29105 * 37.02489 * 14 13 11 45 45 H 1.09003 * 110.52615 * 274.75595 * 14 13 11 46 46 H 0.96999 * 120.00156 * 87.19480 * 17 15 14 47 47 H 0.97001 * 120.00322 * 179.97438 * 21 20 18 48 48 H 1.08995 * 110.72121 * 206.13300 * 26 15 14 49 49 H 1.09003 * 110.87079 * 82.93193 * 26 15 14 50 50 H 1.09002 * 109.47153 * 178.28453 * 29 27 13 51 51 H 1.09001 * 109.46832 * 58.28643 * 29 27 13 52 52 H 1.09004 * 109.47261 * 298.28625 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6182 2.4668 0.0012 7 6 6.3821 3.5772 0.0004 8 8 5.8605 4.6720 -0.0009 9 6 7.8844 3.4581 0.0023 10 6 8.5067 4.8559 0.0015 11 6 10.0089 4.7369 0.0027 12 8 10.5306 3.6420 0.0045 13 7 10.7729 5.8473 0.0028 14 6 10.2761 7.2387 -0.0001 15 6 11.4279 8.0726 0.6142 16 1 11.3808 9.1093 0.2806 17 7 11.4117 7.9928 2.0770 18 6 10.7412 8.9377 2.8069 19 1 10.2246 9.7420 2.3043 20 6 10.7254 8.8617 4.1928 21 7 10.0814 9.7701 4.8944 22 14 11.6184 7.4701 5.0621 23 1 13.0163 7.8816 5.3485 24 1 10.9239 7.1563 6.3367 25 1 11.6249 6.2665 4.1925 26 6 12.6755 7.3571 0.0320 27 6 12.2429 5.8761 0.0045 28 1 12.6226 5.3624 0.8877 29 6 12.7779 5.2013 -1.2601 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5137 -0.8901 33 1 1.6885 1.8465 0.8898 34 1 1.6886 1.8463 -0.8901 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 3.8358 3.1238 0.8896 38 1 3.8364 3.1228 -0.8905 39 1 6.0353 1.5910 0.0019 40 1 8.2070 2.9160 -0.8866 41 1 8.2051 2.9186 0.8933 42 1 8.1840 5.3977 0.8906 43 1 8.1860 5.3959 -0.8894 44 1 9.3790 7.3211 0.6134 45 1 10.0700 7.5688 -1.0184 46 1 11.8760 7.2706 2.5285 47 1 10.0701 9.7168 5.8629 48 1 13.5382 7.4947 0.6838 49 1 12.8935 7.7143 -0.9745 50 1 13.8667 5.2533 -1.2668 51 1 12.3844 5.7122 -2.1388 52 1 12.4640 4.1575 -1.2756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571489617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:10 Heat of formation + Delta-G solvation = -141.161520 kcal Electronic energy + Delta-G solvation = -29712.278999 eV Core-core repulsion = 25517.769607 eV Total energy + Delta-G solvation = -4194.509392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.38277 -40.69307 -39.00594 -38.82893 -36.50975 -35.90142 -34.17495 -33.44644 -33.03304 -32.26937 -30.58026 -28.30006 -26.97978 -26.69263 -25.49816 -25.17767 -23.06900 -22.70315 -21.60412 -21.14430 -19.83172 -19.72686 -18.57768 -17.72721 -17.65388 -17.41638 -17.20271 -16.93549 -16.53096 -16.30032 -16.15900 -15.76154 -15.60855 -15.52915 -15.11186 -14.81771 -14.68340 -14.46852 -14.02865 -13.97533 -13.64856 -13.49573 -13.36601 -13.12698 -13.11897 -12.98841 -12.90826 -12.75661 -12.70935 -12.38084 -12.24527 -12.09539 -12.07526 -12.04879 -11.99239 -11.77707 -11.50177 -11.09149 -11.00607 -10.79965 -10.65910 -10.16102 -9.71949 -9.23759 -8.03008 -5.35356 1.34772 1.36401 1.42551 1.56842 1.61824 1.86747 2.22886 2.45508 2.87323 3.26605 3.42008 3.56841 3.69204 3.87300 3.88903 3.91387 4.00944 4.05268 4.12508 4.12787 4.18627 4.37224 4.41251 4.46907 4.48214 4.49364 4.54654 4.58319 4.67648 4.68472 4.72373 4.81280 4.82095 4.84965 4.91724 4.96536 5.06227 5.07760 5.10490 5.19091 5.19697 5.35394 5.39139 5.50830 5.79317 6.17430 6.21765 6.46923 6.58419 7.06932 7.14894 7.19258 7.83775 8.00120 9.18146 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.002145 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.061030 B =13051.716244 C =14645.222955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.060 3.940 4 C -0.119 4.119 5 C 0.123 3.877 6 N -0.719 5.719 7 C 0.515 3.485 8 O -0.580 6.580 9 C -0.114 4.114 10 C -0.116 4.116 11 C 0.526 3.474 12 O -0.578 6.578 13 N -0.606 5.606 14 C 0.077 3.923 15 C 0.159 3.841 16 H 0.090 0.910 17 N -0.741 5.741 18 C -0.222 4.222 19 H 0.069 0.931 20 C -0.059 4.059 21 N -0.980 5.980 22 Si 0.945 3.055 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.266 1.266 26 C -0.125 4.125 27 C 0.128 3.872 28 H 0.047 0.953 29 C -0.147 4.147 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.418 0.582 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.361 0.639 47 H 0.256 0.744 48 H 0.084 0.916 49 H 0.114 0.886 50 H 0.082 0.918 51 H 0.067 0.933 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.643 -18.905 -16.703 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.303 3.697 8 O -0.460 6.460 9 C -0.154 4.154 10 C -0.156 4.156 11 C 0.316 3.684 12 O -0.459 6.459 13 N -0.338 5.338 14 C -0.048 4.048 15 C 0.050 3.950 16 H 0.108 0.892 17 N -0.383 5.383 18 C -0.353 4.353 19 H 0.087 0.913 20 C -0.251 4.251 21 N -0.631 5.631 22 Si 0.774 3.226 23 H -0.202 1.202 24 H -0.227 1.227 25 H -0.191 1.191 26 C -0.163 4.163 27 C 0.025 3.975 28 H 0.066 0.934 29 C -0.205 4.205 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.194 0.806 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.133 0.867 50 H 0.101 0.899 51 H 0.086 0.914 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.809 -18.737 -16.654 26.920 hybrid contribution 0.094 -0.602 1.358 1.488 sum -9.715 -19.339 -15.296 26.502 Atomic orbital electron populations 1.22924 0.79429 1.03858 1.00879 1.87810 1.21496 1.28601 1.95647 1.22445 0.93271 0.84595 1.01370 1.21553 0.93824 0.95666 1.04664 1.21176 0.79402 0.97364 1.02187 1.45844 1.06898 1.09390 1.75053 1.20871 0.90111 0.83953 0.74814 1.90725 1.75930 1.28247 1.51111 1.21299 0.89633 0.97706 1.06781 1.21278 0.89878 0.99001 1.05450 1.20519 0.89759 0.82724 0.75349 1.90621 1.75780 1.26761 1.52775 1.48671 1.07211 1.06514 1.71442 1.23304 0.99402 0.80688 1.01400 1.21620 0.93063 0.98239 0.82110 0.89239 1.42729 1.62893 1.30305 1.02359 1.19078 1.23672 1.03470 0.89098 0.91293 1.25359 1.01907 1.00624 0.97224 1.69851 1.49190 1.38162 1.05855 0.85568 0.78689 0.80410 0.77968 1.20173 1.22746 1.19135 1.23057 0.97839 0.91983 1.03467 1.21621 0.79791 0.97539 0.98563 0.93434 1.22020 1.01850 1.00389 0.96249 0.88519 0.93345 0.93091 0.92545 0.92102 0.89552 0.90040 0.92254 0.91525 0.74514 0.86310 0.87753 0.89795 0.87572 0.92129 0.88675 0.80623 0.93490 0.89777 0.86734 0.89937 0.91381 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.32 10.70 -148.98 -1.59 -7.92 16 3 C 0.06 0.73 5.94 71.98 0.43 1.15 16 4 C -0.12 -1.33 5.70 30.59 0.17 -1.16 16 5 C 0.12 1.87 5.67 86.38 0.49 2.36 16 6 N -0.72 -11.64 5.56 -463.04 -2.57 -14.21 16 7 C 0.52 12.10 7.83 87.66 0.69 12.78 16 8 O -0.58 -18.75 15.98 -3.02 -0.05 -18.80 16 9 C -0.11 -2.51 4.99 29.85 0.15 -2.36 16 10 C -0.12 -3.18 4.01 29.85 0.12 -3.06 16 11 C 0.53 16.55 7.64 87.66 0.67 17.22 16 12 O -0.58 -20.26 15.02 -3.04 -0.05 -20.31 16 13 N -0.61 -18.50 3.08 -787.25 -2.42 -20.92 16 14 C 0.08 2.32 6.41 86.79 0.56 2.88 16 15 C 0.16 5.22 3.72 46.38 0.17 5.39 16 16 H 0.09 2.86 8.09 -2.38 -0.02 2.84 16 17 N -0.74 -32.49 5.04 -316.37 -1.59 -34.08 16 18 C -0.22 -12.06 10.44 84.03 0.88 -11.18 16 19 H 0.07 4.03 8.06 -2.91 -0.02 4.00 16 20 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 21 N -0.98 -62.18 13.97 21.65 0.30 -61.87 16 22 Si 0.94 46.19 27.73 68.60 1.90 48.10 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 25 H -0.27 -12.29 6.52 99.48 0.65 -11.65 16 26 C -0.12 -3.13 6.08 31.78 0.19 -2.94 16 27 C 0.13 3.57 3.44 45.34 0.16 3.73 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 C -0.15 -3.34 9.10 71.98 0.65 -2.69 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.42 4.24 8.47 -92.71 -0.79 3.46 16 40 H 0.12 2.17 8.10 -2.39 -0.02 2.15 16 41 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 42 H 0.08 2.67 7.82 -2.38 -0.02 2.65 16 43 H 0.11 2.70 8.10 -2.38 -0.02 2.68 16 44 H 0.06 2.14 7.50 -2.39 -0.02 2.12 16 45 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.36 16.03 5.73 -92.71 -0.53 15.50 16 47 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 48 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.11 2.12 7.85 -2.39 -0.02 2.10 16 50 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.05 1.27 6.89 -2.38 -0.02 1.25 16 Total: -1.00 -77.16 422.29 0.50 -76.65 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.47 Total: 32.73 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.04 Total: 20.63 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -6.29 Total: -131.09 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.69 Total: -47.02 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.10 kcal Total: -77.16 0.50 -76.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571489617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.508 kcal (2) G-P(sol) polarization free energy of solvation -77.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds