Wall clock time and date at job start Wed Apr 1 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00219 * 2 1 4 4 C 1.52990 * 109.47438 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47398 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 11 11 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 12 12 C 1.53122 * 109.52470 * 299.67804 * 11 8 7 13 13 C 1.53035 * 109.28055 * 182.44305 * 12 11 8 14 14 N 1.46843 * 109.52476 * 59.18026 * 13 12 11 15 15 C 1.46898 * 111.00181 * 174.16339 * 14 13 12 16 16 C 1.50699 * 109.46625 * 294.20823 * 15 14 13 17 17 O 1.21287 * 120.00419 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99618 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99833 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00105 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00273 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00272 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47131 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47063 * 119.99887 * 23 21 19 26 26 H 1.48500 * 109.47406 * 239.99593 * 23 21 19 27 27 C 1.46848 * 111.19945 * 298.26187 * 14 13 12 28 28 C 1.53037 * 109.52564 * 61.73542 * 27 14 13 29 29 H 1.08994 * 109.47450 * 60.00063 * 1 2 3 30 30 H 1.09008 * 109.46934 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46950 * 299.99828 * 1 2 3 32 32 H 1.08998 * 109.47093 * 59.99678 * 3 2 1 33 33 H 1.09011 * 109.46622 * 300.00288 * 3 2 1 34 34 H 1.08998 * 109.47508 * 59.99606 * 4 3 2 35 35 H 1.09002 * 109.47337 * 299.99891 * 4 3 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 37 37 H 1.09003 * 109.47189 * 180.02562 * 10 8 7 38 38 H 1.09009 * 109.47238 * 300.00198 * 10 8 7 39 39 H 1.08997 * 109.47293 * 60.00168 * 10 8 7 40 40 H 1.08996 * 109.52515 * 59.87446 * 11 8 7 41 41 H 1.09007 * 109.50266 * 302.38484 * 12 11 8 42 42 H 1.09000 * 109.50157 * 62.50110 * 12 11 8 43 43 H 1.09001 * 109.45901 * 299.16769 * 13 12 11 44 44 H 1.08997 * 109.46183 * 179.19993 * 13 12 11 45 45 H 1.08994 * 109.47141 * 54.20922 * 15 14 13 46 46 H 1.09000 * 109.47150 * 174.21215 * 15 14 13 47 47 H 0.96997 * 120.00281 * 0.02562 * 18 16 15 48 48 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.46258 * 301.72682 * 27 14 13 50 50 H 1.08998 * 109.45620 * 181.75173 * 27 14 13 51 51 H 1.09003 * 109.50371 * 180.87896 * 28 27 14 52 52 H 1.09005 * 109.52981 * 60.79055 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4354 3.5425 -0.0017 7 7 5.4888 2.7023 -0.0024 8 6 6.0846 4.0406 0.0031 9 1 5.4614 4.7134 0.5924 10 6 6.1815 4.5616 -1.4322 11 6 7.4844 3.9731 0.6168 12 6 7.3880 3.4594 2.0561 13 6 8.7833 3.4518 2.6845 14 7 9.3367 4.8119 2.6673 15 6 10.6163 4.8687 3.3865 16 6 10.3835 4.5889 4.8488 17 8 9.2620 4.3639 5.2522 18 7 11.4217 4.5879 5.7084 19 6 11.2099 4.3328 7.0387 20 1 10.2112 4.1332 7.3979 21 6 12.2801 4.3322 7.9249 22 7 13.4953 4.5756 7.4879 23 14 11.9915 3.9854 9.7376 24 1 10.5450 3.7448 9.9714 25 1 12.7653 2.7837 10.1410 26 1 12.4350 5.1525 10.5416 27 6 9.4828 5.3085 1.2931 28 6 8.1083 5.3714 0.6231 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6436 0.8891 36 1 6.0589 1.9175 -0.0025 37 1 6.6253 5.5572 -1.4281 38 1 6.8047 3.8888 -2.0216 39 1 5.1843 4.6097 -1.8694 40 1 8.1076 3.2989 0.0294 41 1 6.7328 4.1126 2.6325 42 1 6.9840 2.4470 2.0548 43 1 9.4342 2.7878 2.1156 44 1 8.7161 3.1000 3.7139 45 1 11.2965 4.1217 2.9774 46 1 11.0540 5.8604 3.2715 47 1 12.3186 4.7675 5.3858 48 1 14.2425 4.5748 8.1064 49 1 10.1304 4.6357 0.7308 50 1 9.9236 6.3052 1.3122 51 1 8.2190 5.7252 -0.4019 52 1 7.4642 6.0549 1.1764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571641981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:35 Heat of formation + Delta-G solvation = -128.668548 kcal Electronic energy + Delta-G solvation = -29951.491350 eV Core-core repulsion = 25757.523693 eV Total energy + Delta-G solvation = -4193.967657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.38095 -39.24590 -38.18402 -37.75434 -35.91280 -33.92743 -33.10906 -32.07700 -31.26236 -30.87950 -29.88733 -27.23767 -26.98579 -25.04554 -24.25975 -23.19414 -22.80886 -21.07392 -20.67850 -19.62484 -19.17199 -17.84929 -17.70164 -16.69380 -16.45943 -16.19492 -15.95133 -15.43273 -15.34835 -15.10808 -14.90408 -14.62865 -14.17789 -14.04171 -13.87709 -13.78339 -13.66685 -13.41128 -13.23966 -12.99675 -12.71184 -12.33319 -12.26255 -12.00317 -11.86083 -11.74345 -11.67565 -11.54844 -11.46349 -11.28986 -11.05392 -11.02606 -10.64640 -10.43474 -10.34520 -10.24136 -10.20809 -10.04717 -10.02711 -9.47028 -9.27996 -8.40593 -7.96375 -7.80681 -6.41125 -3.81740 2.38798 2.71753 3.16511 3.27119 3.34355 3.59069 3.91532 4.01358 4.25352 4.38806 4.48852 4.64493 4.72818 4.74459 4.79192 4.98568 5.01004 5.06811 5.13575 5.15890 5.23048 5.25188 5.27357 5.30286 5.38296 5.41136 5.45955 5.50218 5.53378 5.64498 5.67381 5.77172 5.79252 5.86552 5.88807 5.94304 6.03880 6.12176 6.18552 6.29616 6.29770 6.48098 6.54069 6.74134 7.23933 7.34279 7.47663 7.56153 7.96744 8.07809 8.62934 9.19224 9.55755 10.07668 10.76711 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.001963 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.189910 B =14263.861215 C =16016.721768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.142 4.142 5 C 0.519 3.481 6 O -0.543 6.543 7 N -0.721 5.721 8 C 0.147 3.853 9 H 0.090 0.910 10 C -0.163 4.163 11 C -0.095 4.095 12 C -0.105 4.105 13 C 0.053 3.947 14 N -0.515 5.515 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.056 3.944 28 C -0.107 4.107 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.401 0.599 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.103 0.897 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.028 0.972 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 -5.489 -20.568 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.182 4.182 5 C 0.305 3.695 6 O -0.420 6.420 7 N -0.373 5.373 8 C 0.042 3.958 9 H 0.109 0.891 10 C -0.222 4.222 11 C -0.115 4.115 12 C -0.143 4.143 13 C -0.075 4.075 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.073 4.073 28 C -0.145 4.145 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.235 0.765 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.121 0.879 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.794 -4.776 -19.941 25.883 hybrid contribution 1.357 -0.727 0.285 1.565 sum -14.437 -5.503 -19.656 25.001 Atomic orbital electron populations 1.22737 0.80533 1.02775 1.00252 1.87798 1.20128 1.28033 1.95580 1.22155 0.91887 0.84218 1.01812 1.21486 0.95581 0.95324 1.05774 1.20361 0.82441 0.90979 0.75670 1.90720 1.60960 1.40781 1.49536 1.46062 1.06459 1.09537 1.75202 1.21049 0.94186 0.83785 0.96736 0.89147 1.22217 1.02157 1.01573 0.96211 1.21527 0.94474 0.98321 0.97130 1.21575 0.97780 1.00778 0.94124 1.22243 0.94037 0.88158 1.03015 1.61497 1.25300 1.24048 1.13116 1.21832 0.90488 1.01764 0.94417 1.19765 0.85807 0.84536 0.86942 1.90483 1.23035 1.54018 1.78527 1.41883 1.08527 1.62022 1.07788 1.19745 0.95850 1.44550 0.82540 0.87877 1.25255 0.94703 0.97481 1.00563 1.69621 0.98970 1.49672 1.36121 0.85812 0.78692 0.77856 0.82053 1.19231 1.20811 1.20770 1.22089 0.96306 1.00050 0.88814 1.21617 0.96632 0.96102 1.00130 0.93977 0.89512 0.93851 0.92257 0.92465 0.88081 0.87818 0.76488 0.91136 0.92607 0.92350 0.91143 0.90766 0.92068 0.96271 0.87858 0.93644 0.89414 0.77529 0.91967 0.95389 0.90755 0.91304 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.68 10.70 -35.23 -0.38 -4.06 16 3 C 0.08 0.68 5.23 37.15 0.19 0.87 16 4 C -0.14 -1.08 6.07 -27.89 -0.17 -1.25 16 5 C 0.52 5.19 7.80 -10.98 -0.09 5.10 16 6 O -0.54 -7.49 15.64 5.55 0.09 -7.40 16 7 N -0.72 -6.04 4.43 -53.81 -0.24 -6.28 16 8 C 0.15 1.39 2.16 -67.93 -0.15 1.24 16 9 H 0.09 1.08 7.57 -51.93 -0.39 0.69 16 10 C -0.16 -1.36 9.14 37.16 0.34 -1.02 16 11 C -0.10 -0.93 1.89 -90.50 -0.17 -1.10 16 12 C -0.10 -1.32 5.18 -26.65 -0.14 -1.45 16 13 C 0.05 0.83 5.10 -3.84 -0.02 0.81 16 14 N -0.51 -8.35 4.40 -236.12 -1.04 -9.39 16 15 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 16 C 0.44 10.38 7.46 -10.98 -0.08 10.30 16 17 O -0.58 -15.36 13.90 5.55 0.08 -15.28 16 18 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 23 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 28 C -0.11 -1.10 4.95 -26.65 -0.13 -1.23 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.06 0.52 8.10 -51.92 -0.42 0.10 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 2.44 8.42 -40.82 -0.34 2.10 16 37 H 0.07 0.54 6.49 -51.93 -0.34 0.20 16 38 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 42 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 2.03 5.78 -51.93 -0.30 1.73 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.41 7.99 -51.93 -0.41 1.00 16 47 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 51 H 0.07 0.56 6.58 -51.93 -0.34 0.22 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 414.14 15.07 6.24 6.24 Total: -1.00 -33.36 414.14 -8.30 -41.66 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -9.11 Total: 9.43 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 0.41 Total: 7.13 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.61 Total: -53.75 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.21 Total: -26.74 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.36 -8.30 -41.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571641981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.010 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds