Wall clock time and date at job start Wed Apr 1 2020 01:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00219 * 2 1 4 4 C 1.52990 * 109.47438 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47398 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 11 11 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 12 12 C 1.53122 * 109.52470 * 299.67804 * 11 8 7 13 13 C 1.53035 * 109.28055 * 182.44305 * 12 11 8 14 14 N 1.46843 * 109.52476 * 59.18026 * 13 12 11 15 15 C 1.46898 * 111.00181 * 174.16339 * 14 13 12 16 16 C 1.50699 * 109.46625 * 294.20823 * 15 14 13 17 17 O 1.21287 * 120.00419 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99618 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99833 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00014 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00105 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00273 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00272 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47131 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47063 * 119.99887 * 23 21 19 26 26 H 1.48500 * 109.47406 * 239.99593 * 23 21 19 27 27 C 1.46848 * 111.19945 * 298.26187 * 14 13 12 28 28 C 1.53037 * 109.52564 * 61.73542 * 27 14 13 29 29 H 1.08994 * 109.47450 * 60.00063 * 1 2 3 30 30 H 1.09008 * 109.46934 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46950 * 299.99828 * 1 2 3 32 32 H 1.08998 * 109.47093 * 59.99678 * 3 2 1 33 33 H 1.09011 * 109.46622 * 300.00288 * 3 2 1 34 34 H 1.08998 * 109.47508 * 59.99606 * 4 3 2 35 35 H 1.09002 * 109.47337 * 299.99891 * 4 3 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 37 37 H 1.09003 * 109.47189 * 180.02562 * 10 8 7 38 38 H 1.09009 * 109.47238 * 300.00198 * 10 8 7 39 39 H 1.08997 * 109.47293 * 60.00168 * 10 8 7 40 40 H 1.08996 * 109.52515 * 59.87446 * 11 8 7 41 41 H 1.09007 * 109.50266 * 302.38484 * 12 11 8 42 42 H 1.09000 * 109.50157 * 62.50110 * 12 11 8 43 43 H 1.09001 * 109.45901 * 299.16769 * 13 12 11 44 44 H 1.08997 * 109.46183 * 179.19993 * 13 12 11 45 45 H 1.08994 * 109.47141 * 54.20922 * 15 14 13 46 46 H 1.09000 * 109.47150 * 174.21215 * 15 14 13 47 47 H 0.96997 * 120.00281 * 0.02562 * 18 16 15 48 48 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.46258 * 301.72682 * 27 14 13 50 50 H 1.08998 * 109.45620 * 181.75173 * 27 14 13 51 51 H 1.09003 * 109.50371 * 180.87896 * 28 27 14 52 52 H 1.09005 * 109.52981 * 60.79055 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5614 -0.0013 6 8 3.4354 3.5425 -0.0017 7 7 5.4888 2.7023 -0.0024 8 6 6.0846 4.0406 0.0031 9 1 5.4614 4.7134 0.5924 10 6 6.1815 4.5616 -1.4322 11 6 7.4844 3.9731 0.6168 12 6 7.3880 3.4594 2.0561 13 6 8.7833 3.4518 2.6845 14 7 9.3367 4.8119 2.6673 15 6 10.6163 4.8687 3.3865 16 6 10.3835 4.5889 4.8488 17 8 9.2620 4.3639 5.2522 18 7 11.4217 4.5879 5.7084 19 6 11.2099 4.3328 7.0387 20 1 10.2112 4.1332 7.3979 21 6 12.2801 4.3322 7.9249 22 7 13.4953 4.5756 7.4879 23 14 11.9915 3.9854 9.7376 24 1 10.5450 3.7448 9.9714 25 1 12.7653 2.7837 10.1410 26 1 12.4350 5.1525 10.5416 27 6 9.4828 5.3085 1.2931 28 6 8.1083 5.3714 0.6231 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6436 0.8891 36 1 6.0589 1.9175 -0.0025 37 1 6.6253 5.5572 -1.4281 38 1 6.8047 3.8888 -2.0216 39 1 5.1843 4.6097 -1.8694 40 1 8.1076 3.2989 0.0294 41 1 6.7328 4.1126 2.6325 42 1 6.9840 2.4470 2.0548 43 1 9.4342 2.7878 2.1156 44 1 8.7161 3.1000 3.7139 45 1 11.2965 4.1217 2.9774 46 1 11.0540 5.8604 3.2715 47 1 12.3186 4.7675 5.3858 48 1 14.2425 4.5748 8.1064 49 1 10.1304 4.6357 0.7308 50 1 9.9236 6.3052 1.3122 51 1 8.2190 5.7252 -0.4019 52 1 7.4642 6.0549 1.1764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571641981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:34 Heat of formation + Delta-G solvation = -154.138015 kcal Electronic energy + Delta-G solvation = -29952.595789 eV Core-core repulsion = 25757.523693 eV Total energy + Delta-G solvation = -4195.072096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24145 -40.53505 -39.41437 -38.70673 -36.98053 -35.87834 -34.09641 -33.27545 -32.80765 -31.92922 -30.76833 -28.63082 -27.54897 -26.55524 -25.33731 -24.21254 -23.83379 -21.99651 -21.47256 -21.00226 -20.54832 -19.85975 -18.43759 -17.73400 -17.39612 -17.19474 -16.97125 -16.62354 -16.43921 -16.30928 -15.99105 -15.76544 -15.65678 -15.32369 -15.16582 -14.84617 -14.68650 -14.33793 -14.27842 -14.04010 -13.70537 -13.55745 -13.45359 -13.18874 -13.00084 -12.82260 -12.72491 -12.56752 -12.41597 -12.39751 -12.29214 -12.16609 -12.13184 -12.06235 -11.53866 -11.53398 -11.37941 -11.22901 -10.87770 -10.70156 -10.24659 -10.04260 -9.97285 -9.10630 -8.46019 -5.94271 1.36006 1.41161 1.55146 1.61383 2.02517 2.07317 2.28756 2.82781 2.96480 3.20957 3.41582 3.60779 3.74893 3.83316 3.93513 4.02391 4.14994 4.24939 4.30960 4.35457 4.38398 4.45843 4.49916 4.50217 4.51613 4.53289 4.57285 4.59124 4.66568 4.78596 4.82334 4.82892 4.83911 4.84784 4.92225 4.99746 5.07981 5.10264 5.19327 5.27416 5.40318 5.41835 5.47150 5.58793 5.93886 6.11870 6.15522 6.35470 6.55261 6.62442 7.14572 7.24761 7.58475 8.14886 8.71584 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.001963 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.189910 B =14263.861215 C =16016.721768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.077 3.923 4 C -0.134 4.134 5 C 0.517 3.483 6 O -0.587 6.587 7 N -0.711 5.711 8 C 0.151 3.849 9 H 0.059 0.941 10 C -0.156 4.156 11 C -0.082 4.082 12 C -0.097 4.097 13 C 0.056 3.944 14 N -0.539 5.539 15 C 0.059 3.941 16 C 0.441 3.559 17 O -0.615 6.615 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.055 3.945 28 C -0.104 4.104 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.415 0.585 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.048 0.952 50 H 0.083 0.917 51 H 0.100 0.900 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 -6.282 -22.557 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.000 4.000 4 C -0.173 4.173 5 C 0.304 3.696 6 O -0.467 6.467 7 N -0.363 5.363 8 C 0.047 3.953 9 H 0.078 0.922 10 C -0.214 4.214 11 C -0.101 4.101 12 C -0.135 4.135 13 C -0.072 4.072 14 N -0.264 5.264 15 C -0.073 4.073 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.072 4.072 28 C -0.142 4.142 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.252 0.748 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.119 0.881 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.787 -5.585 -21.959 27.056 hybrid contribution 1.001 -0.479 0.888 1.421 sum -13.787 -6.063 -21.070 25.900 Atomic orbital electron populations 1.22938 0.79318 1.04049 1.00743 1.87768 1.21583 1.27993 1.95625 1.22109 0.92891 0.84112 1.00918 1.21457 0.94474 0.93945 1.07439 1.20781 0.82641 0.91374 0.74756 1.90705 1.61997 1.42354 1.51667 1.45980 1.06238 1.09819 1.74248 1.20903 0.93348 0.83831 0.97260 0.92229 1.22152 1.01746 1.02529 0.94998 1.21423 0.94944 0.98558 0.95151 1.21489 0.95349 1.01145 0.95531 1.22105 0.96046 0.88354 1.00671 1.61461 1.24625 1.24512 1.15824 1.21701 0.91905 1.03377 0.90268 1.20858 0.84718 0.82402 0.89210 1.90466 1.24581 1.55079 1.79928 1.41947 1.09172 1.62820 1.07390 1.19667 0.95219 1.46783 0.84344 0.90507 1.26004 0.94273 0.96698 1.04303 1.69676 0.99428 1.49515 1.37549 0.84896 0.78171 0.78285 0.77131 1.19968 1.19538 1.19667 1.22218 0.97790 1.00691 0.86528 1.21637 0.95237 0.95960 1.01388 0.93211 0.87885 0.93688 0.93709 0.92942 0.85717 0.86619 0.74764 0.90198 0.90679 0.93912 0.88589 0.94004 0.90589 0.94461 0.92683 0.91569 0.87381 0.77056 0.91358 0.93412 0.89881 0.88142 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.29 10.70 -148.98 -1.59 -8.88 16 3 C 0.08 1.35 5.23 71.98 0.38 1.73 16 4 C -0.13 -1.85 6.07 29.85 0.18 -1.67 16 5 C 0.52 10.00 7.80 87.66 0.68 10.69 16 6 O -0.59 -16.56 15.64 -3.04 -0.05 -16.61 16 7 N -0.71 -10.75 4.43 -442.53 -1.96 -12.71 16 8 C 0.15 2.65 2.16 44.99 0.10 2.75 16 9 H 0.06 1.45 7.57 -2.39 -0.02 1.43 16 10 C -0.16 -2.22 9.14 71.98 0.66 -1.57 16 11 C -0.08 -1.40 1.89 -10.71 -0.02 -1.43 16 12 C -0.10 -2.40 5.18 30.65 0.16 -2.24 16 13 C 0.06 1.73 5.10 86.33 0.44 2.17 16 14 N -0.54 -16.97 4.40 -900.96 -3.96 -20.93 16 15 C 0.06 2.02 5.45 85.56 0.47 2.48 16 16 C 0.44 21.09 7.46 87.66 0.65 21.75 16 17 O -0.61 -34.23 13.90 -3.05 -0.04 -34.28 16 18 N -0.58 -29.70 5.29 -306.99 -1.62 -31.32 16 19 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 22 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 23 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 C 0.05 1.18 5.46 86.33 0.47 1.65 16 28 C -0.10 -1.88 4.95 30.65 0.15 -1.73 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 33 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 34 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.42 3.89 8.42 -92.71 -0.78 3.11 16 37 H 0.08 0.99 6.49 -2.39 -0.02 0.97 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.08 1.60 7.56 -2.39 -0.02 1.58 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 2.25 5.78 -2.39 -0.01 2.23 16 45 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 46 H 0.11 3.28 7.99 -2.39 -0.02 3.26 16 47 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 51 H 0.10 1.23 6.58 -2.39 -0.02 1.21 16 52 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -75.87 414.14 -0.67 -76.53 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.59 Total: 34.53 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 6.85 Total: 17.80 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -7.26 Total: -114.45 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -1.68 Total: -59.77 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -75.87 -0.67 -76.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571641981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.604 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds