Wall clock time and date at job start Wed Apr 1 2020 01:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.60572 * 2 1 4 4 C 1.52939 * 109.82935 * 239.68912 * 2 1 3 5 5 N 1.46964 * 108.87045 * 190.88160 * 4 2 1 6 6 C 1.34770 * 120.59400 * 235.20985 * 5 4 2 7 7 O 1.21593 * 119.99764 * 4.57574 * 6 5 4 8 8 N 1.34784 * 120.00319 * 184.58465 * 6 5 4 9 9 C 1.46493 * 120.00047 * 175.05273 * 8 6 5 10 10 C 1.52998 * 109.47016 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47290 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47290 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47290 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47188 * 180.02562 * 13 12 11 15 15 O 1.20828 * 119.99783 * 0.02562 * 14 13 12 16 16 O 1.34226 * 119.99651 * 180.02562 * 14 13 12 17 17 C 1.46968 * 118.81158 * 54.93073 * 5 4 2 18 18 C 1.53374 * 108.63432 * 305.02378 * 17 5 4 19 19 H 1.09000 * 109.60990 * 289.68024 * 18 17 5 20 20 C 1.53000 * 109.60401 * 169.16948 * 18 17 5 21 21 N 1.46958 * 109.61345 * 120.33943 * 2 1 3 22 22 C 1.36944 * 120.59265 * 355.12196 * 21 2 1 23 23 H 1.08001 * 120.00012 * 55.20404 * 22 21 2 24 24 C 1.38807 * 119.99744 * 235.20846 * 22 21 2 25 25 N 1.31625 * 119.99885 * 205.00351 * 24 22 21 26 26 Si 1.86801 * 120.00570 * 25.00098 * 24 22 21 27 27 H 1.48500 * 109.47267 * 94.51001 * 26 24 22 28 28 H 1.48497 * 109.47188 * 214.51471 * 26 24 22 29 29 H 1.48502 * 109.46924 * 334.51221 * 26 24 22 30 30 H 1.08999 * 109.47244 * 303.97843 * 1 2 3 31 31 H 1.08998 * 109.47370 * 63.98452 * 1 2 3 32 32 H 1.09006 * 109.46719 * 183.98000 * 1 2 3 33 33 H 1.08997 * 109.52473 * 71.04124 * 4 2 1 34 34 H 1.09003 * 109.45230 * 310.67548 * 4 2 1 35 35 H 0.96992 * 119.99552 * 355.05440 * 8 6 5 36 36 H 1.09005 * 109.47335 * 60.00014 * 9 8 6 37 37 H 1.08996 * 109.47501 * 300.00277 * 9 8 6 38 38 H 1.09001 * 109.46972 * 60.00717 * 10 9 8 39 39 H 1.08996 * 109.47418 * 300.00581 * 10 9 8 40 40 H 1.08996 * 109.47275 * 300.00560 * 11 10 9 41 41 H 1.09007 * 109.46790 * 59.99993 * 11 10 9 42 42 H 1.08996 * 109.47418 * 300.00472 * 12 11 10 43 43 H 1.08999 * 109.46614 * 60.00220 * 12 11 10 44 44 H 1.09004 * 109.46984 * 300.00403 * 13 12 11 45 45 H 1.09007 * 109.46790 * 59.99993 * 13 12 11 46 46 H 0.96698 * 116.99671 * 180.02562 * 16 14 13 47 47 H 1.09000 * 109.60896 * 64.77185 * 17 5 4 48 48 H 1.09007 * 109.60834 * 185.10912 * 17 5 4 49 49 H 1.08999 * 109.47548 * 60.00213 * 20 18 17 50 50 H 1.09005 * 109.46866 * 179.97438 * 20 18 17 51 51 H 1.09005 * 109.47495 * 299.99893 * 20 18 17 52 52 H 0.96997 * 120.00494 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0488 -0.7261 -1.2420 5 7 3.4947 -0.9446 -1.0956 6 6 4.3534 -0.5066 -2.0374 7 8 3.9434 0.1473 -2.9770 8 7 5.6666 -0.7935 -1.9380 9 6 6.5834 -0.4116 -3.0149 10 6 8.0043 -0.8497 -2.6543 11 6 8.9620 -0.4504 -3.7787 12 6 10.3827 -0.8891 -3.4185 13 6 11.3403 -0.4903 -4.5432 14 6 12.7396 -0.9230 -4.1886 15 8 12.9494 -1.4924 -3.1437 16 8 13.7529 -0.6758 -5.0335 17 6 3.9879 -1.6439 0.0992 18 6 3.4696 -0.9127 1.3439 19 1 3.9735 0.0491 1.4395 20 6 3.7377 -1.7628 2.5874 21 7 2.0233 -0.6992 1.1947 22 6 1.1508 -1.1435 2.1522 23 1 0.3361 -1.7976 1.8787 24 6 1.3136 -0.7530 3.4743 25 7 0.8422 -1.5059 4.4456 26 14 2.2017 0.8407 3.8750 27 1 1.2094 1.9339 4.0344 28 1 2.9657 0.6776 5.1379 29 1 3.1363 1.1776 2.7712 30 1 -0.3634 0.5743 0.8522 31 1 -0.3634 0.4507 -0.9235 32 1 -0.3633 -1.0253 0.0713 33 1 1.8584 -0.1174 -2.1260 34 1 1.5417 -1.6861 -1.3396 35 1 6.0045 -1.2528 -1.1534 36 1 6.5594 0.6703 -3.1460 37 1 6.2774 -0.8967 -3.9417 38 1 8.0286 -1.9316 -2.5231 39 1 8.3101 -0.3643 -1.7275 40 1 8.6563 -0.9354 -4.7057 41 1 8.9375 0.6315 -3.9096 42 1 10.6886 -0.4044 -2.4914 43 1 10.4067 -1.9710 -3.2879 44 1 11.0342 -0.9754 -5.4701 45 1 11.3163 0.5916 -4.6742 46 1 14.6325 -0.9725 -4.7628 47 1 3.6222 -2.6707 0.0992 48 1 5.0780 -1.6438 0.0992 49 1 4.8098 -1.9325 2.6874 50 1 3.3690 -1.2410 3.4706 51 1 3.2258 -2.7202 2.4905 52 1 0.9556 -1.2329 5.3695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589375131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:15 Heat of formation + Delta-G solvation = -103.553405 kcal Electronic energy + Delta-G solvation = -30294.049345 eV Core-core repulsion = 26101.170762 eV Total energy + Delta-G solvation = -4192.878582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.70524 -40.07086 -37.81068 -36.94483 -36.35597 -34.56761 -34.17402 -33.10538 -31.65200 -31.29954 -28.13598 -27.41700 -26.21265 -25.65942 -23.75362 -22.98609 -21.69831 -21.11587 -20.60584 -20.07043 -19.25345 -18.51417 -17.87706 -16.93055 -16.89814 -16.41232 -16.11866 -15.96926 -15.12655 -15.00458 -14.93308 -14.34906 -14.19531 -14.04001 -13.82593 -13.64832 -13.31327 -13.02703 -12.70284 -12.43351 -12.41208 -12.26427 -12.15747 -12.00105 -11.77499 -11.69754 -11.49462 -11.45255 -11.33674 -11.24346 -11.02964 -10.94977 -10.89993 -10.55534 -10.38853 -10.28403 -10.08447 -10.02653 -9.79512 -9.52695 -9.01465 -8.48471 -8.07552 -6.44573 -6.09650 -3.65589 1.73431 2.54835 2.92927 3.31829 3.43727 3.48661 3.51535 4.07822 4.27745 4.41647 4.43997 4.46831 4.73668 4.80802 4.81442 4.93186 5.15601 5.17374 5.18421 5.25778 5.41471 5.50720 5.52562 5.57911 5.61074 5.72411 5.81920 5.90126 5.92942 5.96107 5.97565 6.03634 6.06184 6.24533 6.29654 6.33158 6.40944 6.48142 6.59958 6.62278 6.82485 6.93040 6.97570 7.16943 7.29156 7.32342 7.40629 8.03272 8.22160 8.50449 8.86639 8.98562 9.62867 10.20187 11.02576 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.001990 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.360774 B =14063.514091 C =15123.096163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.150 3.850 3 H 0.029 0.971 4 C 0.119 3.881 5 N -0.618 5.618 6 C 0.705 3.295 7 O -0.602 6.602 8 N -0.753 5.753 9 C 0.140 3.860 10 C -0.132 4.132 11 C -0.115 4.115 12 C -0.110 4.110 13 C -0.114 4.114 14 C 0.476 3.524 15 O -0.515 6.515 16 O -0.520 6.520 17 C 0.101 3.899 18 C 0.153 3.847 19 H 0.033 0.967 20 C -0.135 4.135 21 N -0.593 5.593 22 C -0.276 4.276 23 H 0.071 0.929 24 C 0.063 3.937 25 N -0.886 5.886 26 Si 0.858 3.142 27 H -0.291 1.291 28 H -0.296 1.296 29 H -0.260 1.260 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.410 0.590 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.034 0.966 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.889 0.342 -16.625 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.043 3.957 3 H 0.046 0.954 4 C -0.005 4.005 5 N -0.353 5.353 6 C 0.407 3.593 7 O -0.482 6.482 8 N -0.412 5.412 9 C 0.015 3.985 10 C -0.170 4.170 11 C -0.153 4.153 12 C -0.148 4.148 13 C -0.152 4.152 14 C 0.319 3.681 15 O -0.403 6.403 16 O -0.333 6.333 17 C -0.024 4.024 18 C 0.046 3.954 19 H 0.051 0.949 20 C -0.192 4.192 21 N -0.319 5.319 22 C -0.404 4.404 23 H 0.088 0.912 24 C -0.140 4.140 25 N -0.525 5.525 26 Si 0.686 3.314 27 H -0.219 1.219 28 H -0.223 1.223 29 H -0.185 1.185 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.269 0.731 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.053 0.947 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.193 0.729 -16.963 25.625 hybrid contribution 1.362 0.511 1.086 1.816 sum 20.555 1.240 -15.877 26.003 Atomic orbital electron populations 1.21644 0.94379 1.02463 1.00040 1.20946 0.94058 0.93725 0.86937 0.95375 1.22031 0.77851 1.00730 0.99904 1.47208 1.07079 1.60032 1.21021 1.15850 0.80882 0.79856 0.82756 1.90859 1.77468 1.44806 1.35070 1.45286 1.06578 1.65369 1.23953 1.21115 0.87269 1.00259 0.89827 1.21788 0.93709 1.02097 0.99419 1.21477 0.93270 1.01892 0.98675 1.21464 0.93238 1.02705 0.97408 1.21435 0.87281 1.04344 1.02137 1.23664 0.88063 0.75339 0.81078 1.90751 1.85094 1.39147 1.25320 1.84544 1.20895 1.76670 1.51149 1.22329 0.96868 0.96970 0.86236 1.21101 0.86559 0.95554 0.92161 0.94895 1.21881 0.97922 1.01446 0.97978 1.44321 1.00820 1.65602 1.21187 1.18357 1.10592 1.25284 0.86166 0.91182 1.25873 0.95506 0.96336 0.96274 1.69940 1.46969 1.36036 0.99535 0.87243 0.80183 0.86478 0.77490 1.21851 1.22255 1.18452 0.91807 0.94116 0.92051 0.89891 0.91926 0.76790 0.91839 0.91960 0.91089 0.91062 0.91206 0.91177 0.90760 0.90779 0.87463 0.87452 0.73113 0.91172 0.92030 0.94683 0.91313 0.91172 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.21 37.16 0.31 -2.07 16 2 C 0.15 3.02 3.63 -67.71 -0.25 2.78 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.12 2.18 5.89 -3.82 -0.02 2.16 16 5 N -0.62 -10.91 2.95 -178.47 -0.53 -11.44 16 6 C 0.71 12.29 8.30 -86.92 -0.72 11.57 16 7 O -0.60 -12.37 15.76 5.28 0.08 -12.28 16 8 N -0.75 -9.90 5.47 -65.23 -0.36 -10.26 16 9 C 0.14 1.47 5.68 -4.05 -0.02 1.45 16 10 C -0.13 -0.95 5.33 -26.73 -0.14 -1.10 16 11 C -0.12 -0.63 5.21 -26.73 -0.14 -0.77 16 12 C -0.11 -0.63 4.50 -26.73 -0.12 -0.75 16 13 C -0.11 -0.51 5.81 -27.88 -0.16 -0.68 16 14 C 0.48 3.24 8.33 36.01 0.30 3.54 16 15 O -0.52 -5.38 16.74 -18.75 -0.31 -5.69 16 16 O -0.52 -2.56 13.42 -39.25 -0.53 -3.08 16 17 C 0.10 1.66 5.88 -3.59 -0.02 1.64 16 18 C 0.15 3.07 2.47 -67.49 -0.17 2.90 16 19 H 0.03 0.71 6.81 -51.93 -0.35 0.36 16 20 C -0.13 -2.70 7.85 37.16 0.29 -2.41 16 21 N -0.59 -13.24 2.14 -157.28 -0.34 -13.58 16 22 C -0.28 -7.04 7.23 -15.06 -0.11 -7.15 16 23 H 0.07 1.97 7.27 -52.49 -0.38 1.59 16 24 C 0.06 1.68 3.70 -17.43 -0.06 1.62 16 25 N -0.89 -25.09 13.97 55.49 0.78 -24.31 16 26 Si 0.86 21.13 25.57 -169.99 -4.35 16.79 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.26 -6.28 5.42 56.52 0.31 -5.98 16 30 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.18 7.25 -51.93 -0.38 0.80 16 33 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 34 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.40 4.46 5.94 -40.82 -0.24 4.22 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 42 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 43 H 0.07 0.49 8.10 -51.93 -0.42 0.06 16 44 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.11 0.33 8.14 -51.92 -0.42 -0.09 16 46 H 0.41 0.49 9.10 45.56 0.41 0.90 16 47 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 48 H 0.06 0.82 5.61 -51.93 -0.29 0.53 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 1.58 3.48 -51.93 -0.18 1.39 16 51 H 0.07 1.48 7.88 -51.93 -0.41 1.07 16 52 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -33.99 402.20 -8.69 -42.68 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.16 Total: 2.39 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -1.04 Total: 12.74 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.45 Total: -59.59 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.76 Total: -21.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.35 Total: 16.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.99 -8.69 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589375131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.876 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds