Wall clock time and date at job start Wed Apr 1 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.74588 * 2 1 4 4 C 1.53374 * 109.60844 * 120.42891 * 2 1 3 5 5 N 1.46960 * 108.77435 * 70.40705 * 4 2 1 6 6 C 1.34783 * 120.59413 * 235.11805 * 5 4 2 7 7 O 1.21589 * 119.99802 * 354.81397 * 6 5 4 8 8 N 1.34770 * 119.99966 * 174.81648 * 6 5 4 9 9 C 1.46508 * 119.99647 * 184.92676 * 8 6 5 10 10 C 1.52998 * 109.46724 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47048 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47573 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47428 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47152 * 179.97438 * 13 12 11 15 15 O 1.20827 * 119.99943 * 359.97438 * 14 13 12 16 16 O 1.34221 * 120.00024 * 180.02562 * 14 13 12 17 17 C 1.46964 * 118.81423 * 55.14185 * 5 4 2 18 18 C 1.53368 * 108.63172 * 304.76855 * 17 5 4 19 19 H 1.08995 * 109.61219 * 289.50816 * 18 17 5 20 20 C 1.53002 * 109.60705 * 169.16740 * 18 17 5 21 21 N 1.46967 * 108.63431 * 49.42691 * 18 17 5 22 22 C 1.36945 * 120.59275 * 124.76357 * 21 18 17 23 23 H 1.07998 * 119.99468 * 234.99884 * 22 21 18 24 24 C 1.38809 * 119.99760 * 55.00513 * 22 21 18 25 25 N 1.31619 * 119.99283 * 202.49415 * 24 22 21 26 26 Si 1.86795 * 120.00514 * 22.48923 * 24 22 21 27 27 H 1.48504 * 109.47227 * 87.20743 * 26 24 22 28 28 H 1.48498 * 109.47316 * 207.20814 * 26 24 22 29 29 H 1.48502 * 109.47154 * 327.20880 * 26 24 22 30 30 H 1.08999 * 109.47075 * 299.57172 * 1 2 3 31 31 H 1.09001 * 109.46712 * 59.57103 * 1 2 3 32 32 H 1.08997 * 109.46736 * 179.56985 * 1 2 3 33 33 H 1.09001 * 109.60530 * 310.57562 * 4 2 1 34 34 H 1.08997 * 109.60605 * 190.24062 * 4 2 1 35 35 H 0.96999 * 120.00217 * 4.92705 * 8 6 5 36 36 H 1.08996 * 109.47029 * 299.99752 * 9 8 6 37 37 H 1.09001 * 109.47102 * 60.00316 * 9 8 6 38 38 H 1.09004 * 109.47259 * 299.99363 * 10 9 8 39 39 H 1.08994 * 109.47449 * 60.00104 * 10 9 8 40 40 H 1.09004 * 109.47273 * 299.99943 * 11 10 9 41 41 H 1.09002 * 109.47198 * 59.99322 * 11 10 9 42 42 H 1.08999 * 109.47143 * 299.99996 * 12 11 10 43 43 H 1.09002 * 109.47463 * 59.99422 * 12 11 10 44 44 H 1.08996 * 109.47054 * 299.99805 * 13 12 11 45 45 H 1.09001 * 109.46900 * 60.00260 * 13 12 11 46 46 H 0.96702 * 117.00741 * 179.97438 * 16 14 13 47 47 H 1.08994 * 109.61133 * 64.51413 * 17 5 4 48 48 H 1.09003 * 109.60966 * 184.85787 * 17 5 4 49 49 H 1.08996 * 109.47097 * 60.00699 * 20 18 17 50 50 H 1.09003 * 109.47038 * 180.02562 * 20 18 17 51 51 H 1.09001 * 109.47592 * 300.00339 * 20 18 17 52 52 H 0.97002 * 119.99623 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0448 -0.7317 1.2458 5 7 1.7640 -2.1670 1.1011 6 6 1.0665 -2.8282 2.0461 7 8 0.7450 -2.2613 3.0725 8 7 0.7257 -4.1178 1.8533 9 6 -0.1236 -4.8047 2.8296 10 6 -0.3572 -6.2473 2.3765 11 6 -1.2446 -6.9646 3.3958 12 6 -1.4778 -8.4074 2.9432 13 6 -2.3647 -9.1248 3.9628 14 6 -2.5948 -10.5458 3.5165 15 8 -2.1006 -10.9436 2.4882 16 8 -3.3496 -11.3690 4.2608 17 6 2.2577 -2.8686 -0.0922 18 6 1.7398 -2.1399 -1.3384 19 1 0.6655 -2.2972 -1.4342 20 6 2.4506 -2.6794 -2.5812 21 7 2.0206 -0.7045 -1.1937 22 6 2.7297 -0.0329 -2.1536 23 1 3.6164 0.5204 -1.8817 24 6 2.3087 -0.0633 -3.4760 25 7 3.1663 0.1766 -4.4452 26 14 0.5253 -0.4447 -3.8800 27 1 -0.2675 0.8107 -3.8543 28 1 0.4433 -1.0543 -5.2316 29 1 -0.0178 -1.3937 -2.8752 30 1 -0.3633 0.5072 0.8938 31 1 -0.3633 0.5205 -0.8861 32 1 -0.3633 -1.0276 -0.0077 33 1 1.5384 -0.3473 2.1311 34 1 3.1194 -0.5771 1.3429 35 1 1.0426 -4.5910 1.0681 36 1 0.3682 -4.8050 3.8024 37 1 -1.0803 -4.2881 2.9062 38 1 -0.8488 -6.2475 1.4037 39 1 0.5996 -6.7637 2.3003 40 1 -0.7535 -6.9645 4.3690 41 1 -2.2014 -6.4480 3.4717 42 1 -1.9687 -8.4080 1.9700 43 1 -0.5208 -8.9237 2.8676 44 1 -1.8733 -9.1243 4.9357 45 1 -3.3217 -8.6087 4.0386 46 1 -3.4691 -12.2712 3.9337 47 1 3.3476 -2.8659 -0.0934 48 1 1.8944 -3.8962 -0.0889 49 1 2.2532 -3.7470 -2.6779 50 1 2.0812 -2.1598 -3.4653 51 1 3.5240 -2.5156 -2.4858 52 1 2.8722 0.1550 -5.3693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589375133.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:21 Heat of formation + Delta-G solvation = -124.559757 kcal Electronic energy + Delta-G solvation = -30571.982613 eV Core-core repulsion = 26378.193127 eV Total energy + Delta-G solvation = -4193.789486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46254 -41.20278 -39.29622 -37.53881 -37.00340 -35.76562 -35.48956 -34.31408 -33.50042 -32.04665 -30.10755 -28.34241 -27.71169 -26.83811 -25.13667 -24.07654 -22.82639 -22.29326 -21.60983 -21.29149 -20.23995 -19.37452 -19.00328 -18.18944 -17.55952 -17.36858 -17.31397 -16.91557 -16.78376 -16.33693 -16.16154 -15.43654 -15.39040 -15.14462 -15.08107 -14.69671 -14.42123 -14.28707 -14.19950 -13.85254 -13.76556 -13.38752 -13.19920 -13.10601 -12.99366 -12.75656 -12.53292 -12.49921 -12.44841 -12.32082 -12.19297 -12.02621 -11.95054 -11.84799 -11.78487 -11.69290 -11.58258 -11.40259 -11.38861 -11.04617 -10.52852 -10.16300 -9.53188 -8.30940 -8.16786 -5.74731 1.25068 1.34570 1.43510 1.51183 1.69969 2.18778 2.22200 2.42537 2.94166 3.06130 3.31288 3.80472 3.91826 4.01201 4.07979 4.08566 4.24017 4.25521 4.32309 4.38577 4.48118 4.50976 4.52242 4.67199 4.67902 4.69639 4.72188 4.81600 4.82289 4.87986 4.90928 4.97999 4.99594 5.04369 5.05850 5.15564 5.20513 5.26182 5.37202 5.41737 5.48085 5.54555 5.60068 5.67178 5.68085 5.97686 6.08329 6.36809 7.00247 7.01629 7.12498 7.58922 7.62103 8.21214 8.97540 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.002105 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.106264 B =13298.744478 C =14288.643600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.145 3.855 3 H 0.075 0.925 4 C 0.130 3.870 5 N -0.619 5.619 6 C 0.703 3.297 7 O -0.634 6.634 8 N -0.741 5.741 9 C 0.139 3.861 10 C -0.124 4.124 11 C -0.109 4.109 12 C -0.106 4.106 13 C -0.112 4.112 14 C 0.478 3.522 15 O -0.560 6.560 16 O -0.518 6.518 17 C 0.110 3.890 18 C 0.148 3.852 19 H 0.035 0.965 20 C -0.133 4.133 21 N -0.600 5.600 22 C -0.265 4.265 23 H 0.030 0.970 24 C 0.025 3.975 25 N -0.933 5.933 26 Si 0.918 3.082 27 H -0.304 1.304 28 H -0.303 1.303 29 H -0.237 1.237 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.406 0.594 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.425 0.575 47 H 0.069 0.931 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.038 0.962 51 H 0.050 0.950 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -20.788 17.422 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.038 3.962 3 H 0.093 0.907 4 C 0.005 3.995 5 N -0.354 5.354 6 C 0.405 3.595 7 O -0.516 6.516 8 N -0.399 5.399 9 C 0.015 3.985 10 C -0.161 4.161 11 C -0.147 4.147 12 C -0.144 4.144 13 C -0.150 4.150 14 C 0.323 3.677 15 O -0.451 6.451 16 O -0.331 6.331 17 C -0.014 4.014 18 C 0.043 3.957 19 H 0.052 0.948 20 C -0.191 4.191 21 N -0.325 5.325 22 C -0.394 4.394 23 H 0.048 0.952 24 C -0.175 4.175 25 N -0.574 5.574 26 Si 0.746 3.254 27 H -0.232 1.232 28 H -0.230 1.230 29 H -0.161 1.161 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.286 0.714 47 H 0.087 0.913 48 H 0.118 0.882 49 H 0.096 0.904 50 H 0.057 0.943 51 H 0.069 0.931 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.354 -20.102 17.860 29.188 hybrid contribution -0.468 -0.438 -1.622 1.744 sum -11.822 -20.539 16.238 28.728 Atomic orbital electron populations 1.22038 0.97519 1.00441 1.00458 1.21245 0.92526 0.95860 0.86564 0.90663 1.21829 0.99988 0.79134 0.98516 1.47142 1.56983 1.10087 1.21226 1.15983 0.78594 0.82149 0.82796 1.90836 1.62740 1.69131 1.28912 1.45284 1.55708 1.10316 1.28601 1.21269 0.93356 0.92461 0.91380 1.21737 1.01506 0.92611 1.00295 1.21432 1.00488 0.93811 0.98978 1.21369 0.99703 0.95163 0.98156 1.21510 1.04484 0.86521 1.02440 1.24116 0.73360 0.89791 0.80456 1.90737 1.49479 1.78095 1.26799 1.84516 1.65595 1.28928 1.54105 1.22206 0.99446 0.95576 0.84179 1.21199 0.96538 0.84310 0.93693 0.94783 1.21847 1.00804 0.99565 0.96846 1.44349 1.63444 1.03607 1.21117 1.18212 1.04431 1.29639 0.87136 0.95226 1.26299 0.99241 0.95778 0.96149 1.70004 1.35424 1.52079 0.99865 0.86430 0.83920 0.78075 0.76956 1.23210 1.22999 1.16131 0.91710 0.94649 0.94192 0.89574 0.92103 0.75601 0.92259 0.92719 0.90937 0.90521 0.90189 0.90468 0.92063 0.91821 0.85449 0.85623 0.71387 0.91271 0.88174 0.90432 0.94334 0.93102 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.15 71.98 0.66 -4.62 16 2 C 0.14 5.56 3.32 45.02 0.15 5.71 16 3 H 0.08 2.98 7.93 -2.39 -0.02 2.96 16 4 C 0.13 4.47 5.95 86.42 0.51 4.99 16 5 N -0.62 -19.84 2.62 -836.03 -2.19 -22.03 16 6 C 0.70 22.24 8.29 179.05 1.49 23.72 16 7 O -0.63 -24.29 15.78 -4.00 -0.06 -24.35 16 8 N -0.74 -17.01 5.47 -478.53 -2.62 -19.63 16 9 C 0.14 2.55 5.68 86.38 0.49 3.04 16 10 C -0.12 -1.43 5.33 30.59 0.16 -1.27 16 11 C -0.11 -0.89 5.21 30.59 0.16 -0.73 16 12 C -0.11 -1.00 4.50 30.59 0.14 -0.86 16 13 C -0.11 -0.73 5.81 29.85 0.17 -0.56 16 14 C 0.48 5.81 8.33 71.24 0.59 6.41 16 15 O -0.56 -11.42 16.74 21.96 0.37 -11.05 16 16 O -0.52 -4.16 13.42 -51.33 -0.69 -4.85 16 17 C 0.11 3.27 5.91 86.41 0.51 3.78 16 18 C 0.15 5.53 2.02 45.03 0.09 5.62 16 19 H 0.03 1.33 5.84 -2.39 -0.01 1.31 16 20 C -0.13 -5.08 7.80 71.98 0.56 -4.51 16 21 N -0.60 -26.07 1.87 -650.51 -1.22 -27.29 16 22 C -0.26 -13.96 8.75 84.03 0.74 -13.23 16 23 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 24 C 0.02 1.35 3.82 84.86 0.32 1.67 16 25 N -0.93 -54.76 13.97 21.65 0.30 -54.45 16 26 Si 0.92 43.90 25.27 68.60 1.73 45.64 16 27 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.24 -10.45 5.02 99.48 0.50 -9.95 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.36 7.99 -2.39 -0.02 1.34 16 32 H 0.04 1.46 7.01 -2.39 -0.02 1.45 16 33 H 0.09 2.95 6.99 -2.39 -0.02 2.94 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.41 7.52 5.92 -92.71 -0.55 6.98 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 43 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 44 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.13 0.39 8.14 -2.39 -0.02 0.38 16 46 H 0.42 0.41 9.10 -74.06 -0.67 -0.27 16 47 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 48 H 0.10 2.18 5.55 -2.39 -0.01 2.17 16 49 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.04 1.70 3.29 -2.39 -0.01 1.70 16 51 H 0.05 2.10 7.88 -2.39 -0.02 2.09 16 52 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -74.92 402.02 1.87 -73.05 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.50 Total: 15.82 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 6.75 Total: 29.15 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -5.72 Total: -123.41 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.38 Total: -40.25 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.73 Total: 45.64 kcal Total: -74.92 1.87 -73.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589375133.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.508 kcal (2) G-P(sol) polarization free energy of solvation -74.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds