Wall clock time and date at job start Wed Apr 1 2020 01:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47341 * 2 1 4 4 C 1.53000 * 109.47118 * 120.00450 * 2 1 3 5 5 H 1.09009 * 109.46913 * 184.99599 * 4 2 1 6 6 N 1.46501 * 109.47203 * 64.99887 * 4 2 1 7 7 C 1.34774 * 119.99978 * 155.00273 * 6 4 2 8 8 O 1.21283 * 119.99960 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00311 * 179.97438 * 7 6 4 10 10 N 1.46894 * 109.47505 * 173.72220 * 9 7 6 11 11 C 1.46895 * 111.00475 * 65.85942 * 10 9 7 12 12 C 1.53231 * 109.36419 * 172.76024 * 11 10 9 13 13 H 1.09000 * 109.62891 * 294.10904 * 12 11 10 14 14 C 1.53006 * 109.63043 * 173.52906 * 12 11 10 15 15 N 1.47079 * 108.52441 * 53.81813 * 12 11 10 16 16 C 1.36936 * 120.88452 * 128.78649 * 15 12 11 17 17 H 1.07998 * 120.00048 * 333.63408 * 16 15 12 18 18 C 1.38811 * 119.99911 * 153.61982 * 16 15 12 19 19 N 1.31618 * 120.00281 * 345.52599 * 18 16 15 20 20 Si 1.86802 * 119.99924 * 165.52100 * 18 16 15 21 21 H 1.48493 * 109.47183 * 60.00343 * 20 18 16 22 22 H 1.48497 * 109.47077 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47057 * 300.00370 * 20 18 16 24 24 C 1.47083 * 118.23335 * 308.82125 * 15 12 11 25 25 H 1.09011 * 109.62719 * 170.89318 * 24 15 12 26 26 C 1.53001 * 109.62497 * 291.46645 * 24 15 12 27 27 C 1.46896 * 111.01774 * 301.54130 * 10 9 7 28 28 C 1.50696 * 109.47017 * 304.99392 * 4 2 1 29 29 O 1.20830 * 119.99848 * 120.00123 * 28 4 2 30 30 O 1.34229 * 120.00125 * 300.00321 * 28 4 2 31 31 H 1.09001 * 109.46549 * 299.99722 * 1 2 3 32 32 H 1.09000 * 109.47456 * 59.99734 * 1 2 3 33 33 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46549 * 240.00278 * 2 1 3 35 35 H 1.08996 * 109.47524 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47473 * 300.00160 * 3 2 1 37 37 H 1.09001 * 109.47072 * 60.00598 * 3 2 1 38 38 H 0.97001 * 119.99794 * 334.99270 * 6 4 2 39 39 H 1.08996 * 109.46738 * 53.71488 * 9 7 6 40 40 H 1.09005 * 109.46435 * 293.72115 * 9 7 6 41 41 H 1.09007 * 109.48929 * 52.78522 * 11 10 9 42 42 H 1.09000 * 109.49423 * 292.73640 * 11 10 9 43 43 H 1.08996 * 109.46826 * 59.99702 * 14 12 11 44 44 H 1.08998 * 109.47014 * 179.97438 * 14 12 11 45 45 H 1.09000 * 109.47019 * 300.00363 * 14 12 11 46 46 H 0.97003 * 120.00188 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47203 * 60.00143 * 26 24 15 48 48 H 1.09004 * 109.46771 * 180.02562 * 26 24 15 49 49 H 1.09002 * 109.47561 * 300.00146 * 26 24 15 50 50 H 1.09001 * 109.47383 * 67.26693 * 27 10 9 51 51 H 1.09001 * 109.51830 * 307.21485 * 27 10 9 52 52 H 0.96707 * 116.99802 * 180.02562 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6445 1.2950 6 7 1.6524 -2.1329 1.1904 7 6 2.3685 -3.0568 1.8612 8 8 3.3341 -2.7197 2.5131 9 6 1.9696 -4.5088 1.8013 10 7 2.9836 -5.3239 2.4833 11 6 3.0184 -5.0262 3.9214 12 6 3.9535 -6.0170 4.6228 13 1 3.5355 -7.0217 4.5608 14 6 4.1210 -5.6153 6.0897 15 7 5.2604 -5.9832 3.9491 16 6 6.4156 -5.8116 4.6641 17 1 6.3928 -5.2920 5.6106 18 6 7.6160 -6.3058 4.1725 19 7 7.6145 -7.1735 3.1828 20 14 9.2336 -5.7394 4.9155 21 1 9.2653 -6.0899 6.3581 22 1 10.3603 -6.4095 4.2179 23 1 9.3611 -4.2679 4.7607 24 6 5.2936 -6.1378 2.4867 25 1 6.2990 -5.9316 2.1194 26 6 4.8877 -7.5644 2.1115 27 6 4.3057 -5.1423 1.8694 28 6 1.4392 -0.0860 2.4765 29 8 0.7572 -0.7448 3.2254 30 8 1.6617 1.2116 2.7378 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6768 1.9562 0.8900 38 1 0.8803 -2.4026 0.6689 39 1 1.8921 -4.8216 0.7600 40 1 1.0059 -4.6413 2.2932 41 1 2.0144 -5.1175 4.3361 42 1 3.3839 -4.0107 4.0739 43 1 3.1486 -5.6246 6.5821 44 1 4.7861 -6.3219 6.5862 45 1 4.5471 -4.6137 6.1458 46 1 8.4534 -7.5186 2.8390 47 1 3.8789 -7.7623 2.4736 48 1 4.9136 -7.6763 1.0275 49 1 5.5820 -8.2712 2.5660 50 1 4.6536 -4.1252 2.0500 51 1 4.2359 -5.3175 0.7958 52 1 1.2557 1.5745 3.5370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591868656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:36 Heat of formation + Delta-G solvation = -87.584252 kcal Electronic energy + Delta-G solvation = -32586.308912 eV Core-core repulsion = 28394.122804 eV Total energy + Delta-G solvation = -4192.186108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08467 -39.79597 -37.92264 -36.72204 -36.32848 -34.34111 -33.45539 -32.39448 -31.18584 -28.80738 -27.80700 -27.51290 -26.41635 -25.80356 -23.97305 -23.06161 -22.09349 -20.71476 -20.43471 -20.26858 -18.52269 -18.23426 -17.59342 -16.83045 -16.31416 -16.07776 -15.73833 -15.36727 -14.76103 -14.54921 -14.39942 -14.30780 -14.10286 -13.78645 -13.61865 -13.46840 -13.09341 -13.01821 -12.84969 -12.43668 -12.22654 -11.83970 -11.72795 -11.66848 -11.58426 -11.37076 -11.35332 -11.18468 -11.04560 -10.84418 -10.75827 -10.73863 -10.45769 -10.40021 -10.31709 -10.22156 -9.87120 -9.75511 -9.36707 -9.23015 -9.08426 -8.32063 -7.54355 -6.45231 -5.60843 -3.01469 2.02205 2.39724 2.83909 3.21063 3.47618 3.52544 3.54883 4.13415 4.41321 4.46797 4.55523 4.62602 4.86407 4.94074 5.07692 5.17931 5.28523 5.34634 5.40066 5.46020 5.48667 5.53341 5.59036 5.59288 5.78316 5.99804 6.04438 6.10725 6.11776 6.24392 6.28034 6.35130 6.46304 6.56824 6.66446 6.69027 6.79853 6.99966 7.10395 7.17317 7.22640 7.27211 7.41879 7.63617 7.65999 7.68970 7.88379 7.99335 8.08177 8.26548 8.62239 9.40609 10.03201 10.61073 11.46527 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.003139 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.928610 B = 8918.111331 C = 9256.063845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 C -0.157 4.157 4 C 0.158 3.842 5 H 0.125 0.875 6 N -0.719 5.719 7 C 0.484 3.516 8 O -0.513 6.513 9 C 0.037 3.963 10 N -0.502 5.502 11 C 0.035 3.965 12 C 0.175 3.825 13 H 0.030 0.970 14 C -0.137 4.137 15 N -0.583 5.583 16 C -0.239 4.239 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.903 5.903 20 Si 0.899 3.101 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.199 3.801 25 H 0.098 0.902 26 C -0.134 4.134 27 C 0.025 3.975 28 C 0.470 3.530 29 O -0.504 6.504 30 O -0.512 6.512 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.403 0.597 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.250 0.750 47 H 0.031 0.969 48 H 0.019 0.981 49 H 0.070 0.930 50 H 0.056 0.944 51 H 0.051 0.949 52 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 14.716 -8.938 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.115 4.115 3 C -0.215 4.215 4 C 0.050 3.950 5 H 0.143 0.857 6 N -0.375 5.375 7 C 0.270 3.730 8 O -0.387 6.387 9 C -0.096 4.096 10 N -0.224 5.224 11 C -0.094 4.094 12 C 0.068 3.932 13 H 0.047 0.953 14 C -0.195 4.195 15 N -0.306 5.306 16 C -0.369 4.369 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.549 5.549 20 Si 0.729 3.271 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.214 1.214 24 C 0.092 3.908 25 H 0.116 0.884 26 C -0.193 4.193 27 C -0.104 4.104 28 C 0.309 3.691 29 O -0.391 6.391 30 O -0.324 6.324 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.239 0.761 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.038 0.962 49 H 0.089 0.911 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -15.796 13.977 -8.680 22.809 hybrid contribution 0.322 1.270 0.715 1.493 sum -15.474 15.248 -7.965 23.138 Atomic orbital electron populations 1.21957 0.94405 1.02216 1.02608 1.21356 0.96596 0.97605 0.95947 1.22012 1.01812 0.94287 1.03345 1.20528 1.01918 0.82260 0.90269 0.85740 1.46163 1.33546 1.04751 1.53007 1.22836 0.82659 0.89661 0.77838 1.90731 1.26825 1.81715 1.39458 1.22458 0.98944 0.85989 1.02193 1.62423 1.06852 1.49316 1.03813 1.22870 0.98827 1.00786 0.86959 1.20421 0.87142 0.94958 0.90714 0.95287 1.21794 0.99492 1.01829 0.96385 1.44208 1.00482 1.84348 1.01547 1.19176 0.85138 1.28355 1.04245 0.91403 1.24963 0.98069 0.97471 0.99413 1.69981 1.24966 1.30884 1.29093 0.86420 0.83917 0.78217 0.78501 1.21186 1.21806 1.21380 1.20420 0.96656 0.90807 0.82917 0.88429 1.21960 0.99747 1.00299 0.97264 1.23119 0.88864 1.01700 0.96712 1.24074 0.77829 0.79784 0.87367 1.90725 1.36652 1.63140 1.48575 1.84601 1.72427 1.27037 1.48329 0.92661 0.91357 0.92274 0.88746 0.91996 0.91987 0.90134 0.76115 0.88323 0.88193 0.93046 0.92208 0.94403 0.91959 0.92935 0.93938 0.94995 0.96226 0.91131 0.92555 0.93070 0.73643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.75 37.16 0.33 -0.60 16 2 C -0.10 -0.65 2.85 -90.62 -0.26 -0.91 16 3 C -0.16 -1.00 8.83 37.15 0.33 -0.67 16 4 C 0.16 1.63 2.29 -69.08 -0.16 1.47 16 5 H 0.13 1.49 7.58 -51.92 -0.39 1.09 16 6 N -0.72 -7.75 4.54 -54.93 -0.25 -8.00 16 7 C 0.48 7.21 7.06 -10.99 -0.08 7.13 16 8 O -0.51 -10.06 11.34 5.55 0.06 -10.00 16 9 C 0.04 0.51 5.85 -4.98 -0.03 0.48 16 10 N -0.50 -9.33 4.32 -235.78 -1.02 -10.34 16 11 C 0.03 0.70 4.51 -3.71 -0.02 0.68 16 12 C 0.17 3.93 3.26 -67.49 -0.22 3.71 16 13 H 0.03 0.69 7.63 -51.93 -0.40 0.29 16 14 C -0.14 -2.83 7.93 37.16 0.29 -2.53 16 15 N -0.58 -15.08 2.74 -157.00 -0.43 -15.51 16 16 C -0.24 -6.70 8.75 -15.06 -0.13 -6.84 16 17 H 0.07 1.88 6.14 -52.49 -0.32 1.56 16 18 C 0.00 -0.05 5.00 -17.43 -0.09 -0.14 16 19 N -0.90 -26.10 9.65 55.49 0.54 -25.56 16 20 Si 0.90 22.42 29.58 -169.99 -5.03 17.40 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C 0.20 4.89 2.35 -67.49 -0.16 4.73 16 25 H 0.10 2.73 6.01 -51.92 -0.31 2.42 16 26 C -0.13 -3.14 8.95 37.16 0.33 -2.80 16 27 C 0.02 0.52 4.49 -3.71 -0.02 0.50 16 28 C 0.47 5.47 6.13 36.00 0.22 5.69 16 29 O -0.50 -7.62 17.08 -18.75 -0.32 -7.94 16 30 O -0.51 -4.37 10.57 -39.26 -0.41 -4.79 16 31 H 0.05 0.39 7.07 -51.93 -0.37 0.02 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.33 6.77 -51.93 -0.35 -0.03 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.55 5.46 -51.93 -0.28 0.27 16 38 H 0.40 3.11 7.18 -40.82 -0.29 2.82 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 41 H 0.05 0.93 8.04 -51.92 -0.42 0.52 16 42 H 0.06 1.36 5.81 -51.93 -0.30 1.06 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.34 7.57 -51.93 -0.39 0.95 16 45 H 0.05 1.13 7.54 -51.93 -0.39 0.73 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.03 0.72 7.08 -51.93 -0.37 0.35 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 1.87 6.97 -51.93 -0.36 1.51 16 50 H 0.06 1.31 5.66 -51.93 -0.29 1.02 16 51 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 52 H 0.40 2.00 9.10 45.56 0.41 2.42 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -35.00 391.24 -8.38 -43.39 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.77 Total: 5.56 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 0.35 Total: 9.92 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -1.16 Total: -59.42 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.67 Total: -22.73 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.00 -8.38 -43.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591868656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.197 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds