Wall clock time and date at job start Wed Apr 1 2020 01:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47341 * 2 1 4 4 C 1.53000 * 109.47118 * 120.00450 * 2 1 3 5 5 H 1.09009 * 109.46913 * 184.99599 * 4 2 1 6 6 N 1.46501 * 109.47203 * 64.99887 * 4 2 1 7 7 C 1.34774 * 119.99978 * 155.00273 * 6 4 2 8 8 O 1.21283 * 119.99960 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00311 * 179.97438 * 7 6 4 10 10 N 1.46894 * 109.47505 * 173.72220 * 9 7 6 11 11 C 1.46895 * 111.00475 * 65.85942 * 10 9 7 12 12 C 1.53231 * 109.36419 * 172.76024 * 11 10 9 13 13 H 1.09000 * 109.62891 * 294.10904 * 12 11 10 14 14 C 1.53006 * 109.63043 * 173.52906 * 12 11 10 15 15 N 1.47079 * 108.52441 * 53.81813 * 12 11 10 16 16 C 1.36936 * 120.88452 * 128.78649 * 15 12 11 17 17 H 1.07998 * 120.00048 * 333.63408 * 16 15 12 18 18 C 1.38811 * 119.99911 * 153.61982 * 16 15 12 19 19 N 1.31618 * 120.00281 * 345.52599 * 18 16 15 20 20 Si 1.86802 * 119.99924 * 165.52100 * 18 16 15 21 21 H 1.48493 * 109.47183 * 60.00343 * 20 18 16 22 22 H 1.48497 * 109.47077 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47057 * 300.00370 * 20 18 16 24 24 C 1.47083 * 118.23335 * 308.82125 * 15 12 11 25 25 H 1.09011 * 109.62719 * 170.89318 * 24 15 12 26 26 C 1.53001 * 109.62497 * 291.46645 * 24 15 12 27 27 C 1.46896 * 111.01774 * 301.54130 * 10 9 7 28 28 C 1.50696 * 109.47017 * 304.99392 * 4 2 1 29 29 O 1.20830 * 119.99848 * 120.00123 * 28 4 2 30 30 O 1.34229 * 120.00125 * 300.00321 * 28 4 2 31 31 H 1.09001 * 109.46549 * 299.99722 * 1 2 3 32 32 H 1.09000 * 109.47456 * 59.99734 * 1 2 3 33 33 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46549 * 240.00278 * 2 1 3 35 35 H 1.08996 * 109.47524 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47473 * 300.00160 * 3 2 1 37 37 H 1.09001 * 109.47072 * 60.00598 * 3 2 1 38 38 H 0.97001 * 119.99794 * 334.99270 * 6 4 2 39 39 H 1.08996 * 109.46738 * 53.71488 * 9 7 6 40 40 H 1.09005 * 109.46435 * 293.72115 * 9 7 6 41 41 H 1.09007 * 109.48929 * 52.78522 * 11 10 9 42 42 H 1.09000 * 109.49423 * 292.73640 * 11 10 9 43 43 H 1.08996 * 109.46826 * 59.99702 * 14 12 11 44 44 H 1.08998 * 109.47014 * 179.97438 * 14 12 11 45 45 H 1.09000 * 109.47019 * 300.00363 * 14 12 11 46 46 H 0.97003 * 120.00188 * 179.97438 * 19 18 16 47 47 H 1.08997 * 109.47203 * 60.00143 * 26 24 15 48 48 H 1.09004 * 109.46771 * 180.02562 * 26 24 15 49 49 H 1.09002 * 109.47561 * 300.00146 * 26 24 15 50 50 H 1.09001 * 109.47383 * 67.26693 * 27 10 9 51 51 H 1.09001 * 109.51830 * 307.21485 * 27 10 9 52 52 H 0.96707 * 116.99802 * 180.02562 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6445 1.2950 6 7 1.6524 -2.1329 1.1904 7 6 2.3685 -3.0568 1.8612 8 8 3.3341 -2.7197 2.5131 9 6 1.9696 -4.5088 1.8013 10 7 2.9836 -5.3239 2.4833 11 6 3.0184 -5.0262 3.9214 12 6 3.9535 -6.0170 4.6228 13 1 3.5355 -7.0217 4.5608 14 6 4.1210 -5.6153 6.0897 15 7 5.2604 -5.9832 3.9491 16 6 6.4156 -5.8116 4.6641 17 1 6.3928 -5.2920 5.6106 18 6 7.6160 -6.3058 4.1725 19 7 7.6145 -7.1735 3.1828 20 14 9.2336 -5.7394 4.9155 21 1 9.2653 -6.0899 6.3581 22 1 10.3603 -6.4095 4.2179 23 1 9.3611 -4.2679 4.7607 24 6 5.2936 -6.1378 2.4867 25 1 6.2990 -5.9316 2.1194 26 6 4.8877 -7.5644 2.1115 27 6 4.3057 -5.1423 1.8694 28 6 1.4392 -0.0860 2.4765 29 8 0.7572 -0.7448 3.2254 30 8 1.6617 1.2116 2.7378 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8899 37 1 1.6768 1.9562 0.8900 38 1 0.8803 -2.4026 0.6689 39 1 1.8921 -4.8216 0.7600 40 1 1.0059 -4.6413 2.2932 41 1 2.0144 -5.1175 4.3361 42 1 3.3839 -4.0107 4.0739 43 1 3.1486 -5.6246 6.5821 44 1 4.7861 -6.3219 6.5862 45 1 4.5471 -4.6137 6.1458 46 1 8.4534 -7.5186 2.8390 47 1 3.8789 -7.7623 2.4736 48 1 4.9136 -7.6763 1.0275 49 1 5.5820 -8.2712 2.5660 50 1 4.6536 -4.1252 2.0500 51 1 4.2359 -5.3175 0.7958 52 1 1.2557 1.5745 3.5370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591868656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:35 Heat of formation + Delta-G solvation = -113.791175 kcal Electronic energy + Delta-G solvation = -32587.445329 eV Core-core repulsion = 28394.122804 eV Total energy + Delta-G solvation = -4193.322525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03906 -41.00288 -39.39860 -37.64736 -37.21206 -35.97945 -34.38125 -34.21804 -33.10788 -30.17128 -29.24019 -28.22642 -27.69021 -27.40040 -25.87560 -24.15408 -23.42096 -22.41065 -21.49205 -21.13769 -20.35296 -19.11197 -18.72849 -17.95542 -17.72492 -17.15856 -16.97170 -16.92462 -16.18641 -15.99168 -15.75652 -15.63201 -15.35809 -15.17405 -14.86251 -14.61797 -14.52029 -14.20693 -13.84341 -13.58018 -13.46724 -13.32983 -13.03226 -12.95457 -12.83408 -12.73948 -12.60647 -12.50689 -12.29044 -12.21345 -12.16735 -12.11243 -11.94616 -11.92351 -11.80703 -11.64758 -11.52729 -11.43397 -11.20540 -11.00679 -10.41721 -10.33115 -9.07482 -8.47422 -7.74177 -5.16442 1.11916 1.41868 1.45491 1.47882 1.53866 1.88320 2.34874 2.55558 3.02991 3.38848 3.48317 3.65473 3.76661 3.91347 4.05215 4.19627 4.22533 4.30254 4.39549 4.42200 4.55430 4.57442 4.62253 4.68062 4.75662 4.80674 4.82727 4.89898 4.92852 4.95574 4.99685 5.05250 5.12128 5.15176 5.26333 5.31105 5.32340 5.37550 5.41569 5.51895 5.54580 5.60484 5.72252 5.81207 6.04240 6.17920 6.20092 6.47031 6.52578 6.89920 7.20498 7.28860 8.00347 8.52579 9.30242 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.003139 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.928610 B = 8918.111331 C = 9256.063845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.157 4.157 4 C 0.154 3.846 5 H 0.106 0.894 6 N -0.700 5.700 7 C 0.482 3.518 8 O -0.567 6.567 9 C 0.036 3.964 10 N -0.504 5.504 11 C 0.049 3.951 12 C 0.167 3.833 13 H 0.022 0.978 14 C -0.128 4.128 15 N -0.600 5.600 16 C -0.250 4.250 17 H 0.063 0.937 18 C -0.050 4.050 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.194 3.806 25 H 0.057 0.943 26 C -0.114 4.114 27 C 0.043 3.957 28 C 0.472 3.528 29 O -0.544 6.544 30 O -0.503 6.503 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.421 0.579 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.245 0.755 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.034 0.966 50 H 0.031 0.969 51 H 0.074 0.926 52 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 15.689 -10.338 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 C -0.214 4.214 4 C 0.046 3.954 5 H 0.123 0.877 6 N -0.356 5.356 7 C 0.269 3.731 8 O -0.445 6.445 9 C -0.096 4.096 10 N -0.226 5.226 11 C -0.081 4.081 12 C 0.061 3.939 13 H 0.040 0.960 14 C -0.186 4.186 15 N -0.323 5.323 16 C -0.381 4.381 17 H 0.081 0.919 18 C -0.245 4.245 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.088 3.912 25 H 0.075 0.925 26 C -0.173 4.173 27 C -0.086 4.086 28 C 0.314 3.686 29 O -0.434 6.434 30 O -0.316 6.316 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.053 0.947 50 H 0.049 0.951 51 H 0.092 0.908 52 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -18.267 14.995 -10.108 25.704 hybrid contribution 0.987 1.077 1.141 1.854 sum -17.280 16.072 -8.967 25.246 Atomic orbital electron populations 1.21965 0.93409 1.02769 1.02888 1.21373 0.97262 0.97458 0.94403 1.22018 1.01425 0.94080 1.03905 1.20700 1.00927 0.82118 0.91632 0.87654 1.45897 1.33279 1.04643 1.51768 1.22890 0.82145 0.90641 0.77400 1.90734 1.29274 1.82513 1.41964 1.22649 0.98074 0.84812 1.04040 1.62315 1.06275 1.50931 1.03050 1.22614 0.99102 0.98186 0.88179 1.20614 0.86168 0.95331 0.91808 0.95998 1.21694 1.00987 1.00231 0.95652 1.44434 1.01121 1.84521 1.02244 1.19402 0.86455 1.27901 1.04294 0.91901 1.25598 1.00633 0.97981 1.00288 1.70147 1.24967 1.31716 1.30076 0.85513 0.80569 0.77357 0.77984 1.20543 1.21809 1.21618 1.20332 0.95858 0.92364 0.82676 0.92484 1.21713 0.98874 0.98628 0.98109 1.22730 0.89452 0.98816 0.97634 1.24296 0.76945 0.80261 0.87120 1.90707 1.38669 1.64135 1.49853 1.84574 1.72067 1.25649 1.49279 0.93935 0.89499 0.91626 0.87196 0.92677 0.90167 0.90797 0.74022 0.84700 0.85593 0.90470 0.94884 0.90852 0.93526 0.94456 0.94570 0.94209 0.94313 0.94737 0.95120 0.90777 0.71737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.75 71.98 0.63 -0.75 16 2 C -0.09 -0.96 2.85 -10.80 -0.03 -0.99 16 3 C -0.16 -1.67 8.83 71.98 0.64 -1.04 16 4 C 0.15 2.99 2.29 44.24 0.10 3.09 16 5 H 0.11 2.52 7.58 -2.38 -0.02 2.51 16 6 N -0.70 -13.66 4.54 -446.09 -2.03 -15.68 16 7 C 0.48 13.62 7.06 87.66 0.62 14.23 16 8 O -0.57 -22.37 11.34 -3.04 -0.03 -22.41 16 9 C 0.04 0.88 5.85 85.56 0.50 1.38 16 10 N -0.50 -17.79 4.32 -899.87 -3.88 -21.67 16 11 C 0.05 1.91 4.51 86.38 0.39 2.30 16 12 C 0.17 7.52 3.26 44.96 0.15 7.67 16 13 H 0.02 1.04 7.63 -2.39 -0.02 1.02 16 14 C -0.13 -5.28 7.93 71.98 0.57 -4.71 16 15 N -0.60 -31.77 2.74 -650.64 -1.78 -33.55 16 16 C -0.25 -14.44 8.75 84.03 0.74 -13.71 16 17 H 0.06 3.61 6.14 -2.91 -0.02 3.59 16 18 C -0.05 -2.89 5.00 84.86 0.42 -2.47 16 19 N -0.92 -55.03 9.65 21.65 0.21 -54.83 16 20 Si 0.96 47.39 29.58 68.60 2.03 49.42 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 C 0.19 9.72 2.35 44.96 0.11 9.83 16 25 H 0.06 3.31 6.01 -2.38 -0.01 3.30 16 26 C -0.11 -5.37 8.95 71.98 0.64 -4.72 16 27 C 0.04 1.77 4.49 86.38 0.39 2.16 16 28 C 0.47 10.61 6.13 71.23 0.44 11.04 16 29 O -0.54 -16.06 17.08 21.95 0.37 -15.69 16 30 O -0.50 -8.09 10.57 -51.41 -0.54 -8.64 16 31 H 0.04 0.51 7.07 -2.39 -0.02 0.49 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.51 6.77 -2.39 -0.02 0.49 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.89 5.46 -2.39 -0.01 0.88 16 38 H 0.42 5.12 7.18 -92.71 -0.67 4.45 16 39 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.13 2.52 8.05 -2.38 -0.02 2.50 16 41 H 0.08 2.62 8.04 -2.38 -0.02 2.60 16 42 H 0.03 1.51 5.81 -2.39 -0.01 1.50 16 43 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.05 2.03 7.57 -2.39 -0.02 2.01 16 45 H 0.04 1.62 7.54 -2.39 -0.02 1.60 16 46 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 47 H 0.04 1.76 7.08 -2.39 -0.02 1.74 16 48 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.03 1.84 6.97 -2.39 -0.02 1.83 16 50 H 0.03 1.45 5.66 -2.39 -0.01 1.44 16 51 H 0.07 2.68 8.11 -2.39 -0.02 2.67 16 52 H 0.42 3.70 9.10 -74.05 -0.67 3.03 16 Total: -1.00 -79.77 391.24 0.25 -79.53 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.39 Total: 20.19 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 6.30 Total: 23.33 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -7.48 Total: -125.73 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -0.20 Total: -46.73 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -79.77 0.25 -79.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591868656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.264 kcal (2) G-P(sol) polarization free energy of solvation -79.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds