Wall clock time and date at job start Wed Apr 1 2020 01:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47529 * 120.00370 * 2 1 3 5 5 H 1.09006 * 109.46920 * 300.00255 * 4 2 1 6 6 N 1.46496 * 109.47294 * 180.02562 * 4 2 1 7 7 C 1.34773 * 120.00037 * 154.99369 * 6 4 2 8 8 O 1.21287 * 119.99866 * 0.02562 * 7 6 4 9 9 C 1.50701 * 120.00235 * 180.02562 * 7 6 4 10 10 N 1.46902 * 109.47314 * 180.02562 * 9 7 6 11 11 C 1.46901 * 110.99907 * 170.00183 * 10 9 7 12 12 C 1.53238 * 109.33582 * 187.25443 * 11 10 9 13 13 H 1.08991 * 109.63565 * 65.88038 * 12 11 10 14 14 C 1.53004 * 109.78456 * 186.36628 * 12 11 10 15 15 N 1.47084 * 108.51962 * 306.16356 * 12 11 10 16 16 C 1.36932 * 120.88132 * 231.16629 * 15 12 11 17 17 H 1.08006 * 120.00132 * 54.22060 * 16 15 12 18 18 C 1.38814 * 120.00138 * 234.21540 * 16 15 12 19 19 N 1.31628 * 119.99903 * 16.91811 * 18 16 15 20 20 Si 1.86794 * 120.00424 * 196.91338 * 18 16 15 21 21 H 1.48505 * 109.47188 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47323 * 120.00111 * 20 18 16 23 23 H 1.48494 * 109.47439 * 240.00312 * 20 18 16 24 24 C 1.47079 * 118.23627 * 51.19373 * 15 12 11 25 25 H 1.08999 * 109.63201 * 68.71056 * 24 15 12 26 26 C 1.52995 * 109.62884 * 189.10536 * 24 15 12 27 27 C 1.46898 * 110.99765 * 294.30172 * 10 9 7 28 28 C 1.50700 * 109.47037 * 60.00098 * 4 2 1 29 29 O 1.20817 * 119.99861 * 120.00338 * 28 4 2 30 30 O 1.34230 * 119.99760 * 300.00276 * 28 4 2 31 31 H 1.08991 * 109.47292 * 299.99589 * 1 2 3 32 32 H 1.09004 * 109.47336 * 60.00100 * 1 2 3 33 33 H 1.09005 * 109.46593 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47227 * 240.00437 * 2 1 3 35 35 H 1.08999 * 109.47337 * 300.00732 * 3 2 1 36 36 H 1.09006 * 109.46739 * 60.00138 * 3 2 1 37 37 H 1.09001 * 109.47745 * 179.97438 * 3 2 1 38 38 H 0.97001 * 120.00411 * 335.00326 * 6 4 2 39 39 H 1.08999 * 109.47306 * 60.00272 * 9 7 6 40 40 H 1.09008 * 109.47093 * 300.00062 * 9 7 6 41 41 H 1.08995 * 109.49461 * 67.28763 * 11 10 9 42 42 H 1.08999 * 109.48872 * 307.20515 * 11 10 9 43 43 H 1.09007 * 109.46759 * 180.97521 * 14 12 11 44 44 H 1.08998 * 109.47340 * 300.96692 * 14 12 11 45 45 H 1.08999 * 109.47420 * 60.97267 * 14 12 11 46 46 H 0.96995 * 120.00349 * 184.66606 * 19 18 16 47 47 H 1.08999 * 109.47518 * 59.99529 * 26 24 15 48 48 H 1.09003 * 109.47377 * 299.99772 * 26 24 15 49 49 H 1.08999 * 109.47538 * 179.97438 * 26 24 15 50 50 H 1.09000 * 109.49282 * 52.78301 * 27 10 9 51 51 H 1.09000 * 109.49231 * 292.70882 * 27 10 9 52 52 H 0.96698 * 116.99617 * 180.02562 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 7 3.5050 -0.7207 1.2494 7 6 4.1787 -0.8223 2.4122 8 8 3.5721 -0.9147 3.4585 9 6 5.6857 -0.8212 2.4126 10 7 6.1752 -0.9426 3.7924 11 6 7.6243 -1.1827 3.8177 12 6 8.0638 -1.4827 5.2547 13 1 7.6238 -2.4241 5.5833 14 6 9.5895 -1.5780 5.3204 15 7 7.5993 -0.3902 6.1230 16 6 8.4622 0.2458 6.9750 17 1 9.3761 0.6780 6.5948 18 6 8.1624 0.3352 8.3275 19 7 7.2487 -0.4534 8.8526 20 14 9.0558 1.5745 9.4023 21 1 10.0279 2.3356 8.5770 22 1 8.0715 2.5131 9.9984 23 1 9.7778 0.8605 10.4858 24 6 6.1831 0.0005 6.0524 25 1 5.5623 -0.7969 6.4608 26 6 5.9636 1.2848 6.8545 27 6 5.8175 0.2420 4.5839 28 6 1.5378 -2.1421 1.2491 29 8 2.3230 -3.0604 1.2490 30 8 0.2181 -2.3874 1.2491 31 1 -0.3633 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 3.1300 1.4426 0.0005 38 1 3.9902 -0.6471 0.4127 39 1 6.0485 0.1106 1.9788 40 1 6.0499 -1.6626 1.8229 41 1 8.1461 -0.2972 3.4549 42 1 7.8631 -2.0333 3.1792 43 1 9.8955 -1.8085 6.3409 44 1 9.9335 -2.3665 4.6511 45 1 10.0264 -0.6269 5.0161 46 1 6.9907 -0.3456 9.7813 47 1 6.5803 2.0821 6.4397 48 1 6.2408 1.1151 7.8950 49 1 4.9137 1.5723 6.8001 50 1 4.7461 0.4249 4.5011 51 1 6.3645 1.1078 4.2105 52 1 -0.0560 -3.3147 1.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591868658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:40 Heat of formation + Delta-G solvation = -90.354889 kcal Electronic energy + Delta-G solvation = -31949.053321 eV Core-core repulsion = 27756.747069 eV Total energy + Delta-G solvation = -4192.306252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98914 -39.54962 -38.04642 -36.77145 -36.35554 -34.61372 -33.42833 -32.62594 -31.30768 -28.98869 -27.87028 -27.37409 -26.51789 -25.69552 -24.41710 -22.68889 -21.73536 -20.83086 -20.28079 -20.07272 -19.01550 -18.41111 -17.39616 -16.88557 -16.45541 -16.14510 -15.83099 -15.19279 -15.00855 -14.45177 -14.34330 -14.24520 -14.13472 -13.96252 -13.79701 -13.28498 -13.14550 -12.93682 -12.78321 -12.67342 -12.51493 -12.00575 -11.88676 -11.71534 -11.62403 -11.45714 -11.32139 -11.20828 -11.14935 -10.95426 -10.81890 -10.70965 -10.57279 -10.38908 -10.32372 -10.06078 -9.94201 -9.64118 -9.59377 -9.43377 -9.14452 -8.01629 -7.73400 -6.24510 -5.58669 -3.46602 2.00105 2.38308 2.82246 3.15622 3.36239 3.46022 3.48004 4.11455 4.41876 4.43471 4.52167 4.65629 4.84050 4.93323 5.02945 5.18812 5.30107 5.35431 5.37579 5.40998 5.45133 5.46367 5.54076 5.65901 5.85603 5.91111 5.97248 6.01469 6.09921 6.22849 6.24295 6.27615 6.31387 6.50162 6.55069 6.61029 6.71187 6.84592 6.94211 7.10757 7.21523 7.28384 7.30859 7.61655 7.66230 7.68036 7.80379 7.84999 7.99668 8.27442 8.72017 9.33011 9.84660 10.65553 11.28224 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.002667 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.974854 B =10495.628656 C =10857.775128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.163 3.837 5 H 0.127 0.873 6 N -0.720 5.720 7 C 0.521 3.479 8 O -0.504 6.504 9 C 0.039 3.961 10 N -0.517 5.517 11 C 0.050 3.950 12 C 0.172 3.828 13 H 0.032 0.968 14 C -0.128 4.128 15 N -0.580 5.580 16 C -0.258 4.258 17 H 0.051 0.949 18 C 0.033 3.967 19 N -0.873 5.873 20 Si 0.881 3.119 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.288 1.288 24 C 0.202 3.798 25 H 0.037 0.963 26 C -0.143 4.143 27 C 0.041 3.959 28 C 0.465 3.535 29 O -0.501 6.501 30 O -0.511 6.511 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.404 0.596 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.028 0.972 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.253 0.747 47 H 0.038 0.962 48 H 0.094 0.906 49 H 0.022 0.978 50 H 0.075 0.925 51 H 0.019 0.981 52 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 1.344 -21.421 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.114 4.114 3 C -0.204 4.204 4 C 0.055 3.945 5 H 0.144 0.856 6 N -0.375 5.375 7 C 0.307 3.693 8 O -0.376 6.376 9 C -0.092 4.092 10 N -0.241 5.241 11 C -0.079 4.079 12 C 0.066 3.934 13 H 0.050 0.950 14 C -0.186 4.186 15 N -0.305 5.305 16 C -0.388 4.388 17 H 0.068 0.932 18 C -0.169 4.169 19 N -0.513 5.513 20 Si 0.709 3.291 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.215 1.215 24 C 0.096 3.904 25 H 0.055 0.945 26 C -0.201 4.201 27 C -0.087 4.087 28 C 0.305 3.695 29 O -0.387 6.387 30 O -0.323 6.323 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.239 0.761 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.112 0.888 49 H 0.041 0.959 50 H 0.094 0.906 51 H 0.037 0.963 52 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -12.115 0.951 -20.189 23.564 hybrid contribution 0.751 0.605 -0.196 0.984 sum -11.364 1.556 -20.385 23.390 Atomic orbital electron populations 1.22045 0.92886 1.04172 1.02392 1.21309 0.97764 0.96985 0.95376 1.21841 1.01526 0.94322 1.02683 1.20504 0.82167 0.89026 1.02795 0.85582 1.45788 1.04553 1.76941 1.10219 1.20865 0.90559 0.74847 0.82986 1.90728 1.69847 1.45982 1.31035 1.21921 0.90979 1.02113 0.94217 1.61631 1.14387 1.40627 1.07427 1.22737 0.85898 0.98783 1.00473 1.20523 0.92818 0.92301 0.87781 0.95008 1.21682 0.95817 0.99586 1.01547 1.44060 1.05240 1.36292 1.44938 1.18697 1.03616 1.29947 0.86586 0.93203 1.25579 0.97481 0.96759 0.97032 1.70169 1.33135 1.35006 1.13008 0.86607 0.79819 0.81784 0.80853 1.19905 1.21226 1.21483 1.20226 0.86143 0.95157 0.88840 0.94470 1.22008 0.96887 0.96609 1.04614 1.22983 1.00004 0.88608 0.97145 1.24135 0.80163 0.93360 0.71887 1.90741 1.56864 1.46650 1.44450 1.84619 1.26161 1.35984 1.85528 0.91940 0.92056 0.90029 0.90244 0.91810 0.91901 0.92099 0.76098 0.92556 0.88270 0.95396 0.92171 0.91660 0.94679 0.93262 0.93691 0.94267 0.88779 0.95937 0.90649 0.96268 0.73596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.67 37.16 0.32 -0.59 16 2 C -0.10 -0.60 2.54 -90.62 -0.23 -0.83 16 3 C -0.15 -0.84 9.04 37.16 0.34 -0.51 16 4 C 0.16 1.58 2.09 -69.08 -0.14 1.44 16 5 H 0.13 1.39 7.58 -51.93 -0.39 1.00 16 6 N -0.72 -7.53 3.91 -54.93 -0.22 -7.75 16 7 C 0.52 7.77 7.32 -10.99 -0.08 7.69 16 8 O -0.50 -9.80 13.99 5.55 0.08 -9.72 16 9 C 0.04 0.57 5.45 -4.97 -0.03 0.54 16 10 N -0.52 -9.94 4.37 -235.76 -1.03 -10.97 16 11 C 0.05 0.94 4.92 -3.70 -0.02 0.92 16 12 C 0.17 3.87 3.65 -67.49 -0.25 3.62 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.13 -2.57 8.21 37.16 0.31 -2.27 16 15 N -0.58 -14.83 2.80 -157.00 -0.44 -15.27 16 16 C -0.26 -6.97 6.91 -15.06 -0.10 -7.08 16 17 H 0.05 1.36 7.16 -52.48 -0.38 0.99 16 18 C 0.03 0.91 3.32 -17.43 -0.06 0.85 16 19 N -0.87 -25.40 11.82 55.49 0.66 -24.74 16 20 Si 0.88 21.26 29.59 -169.99 -5.03 16.23 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.20 5.02 3.14 -67.49 -0.21 4.81 16 25 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.14 -3.46 8.11 37.15 0.30 -3.16 16 27 C 0.04 0.87 4.55 -3.70 -0.02 0.86 16 28 C 0.47 5.23 7.59 36.01 0.27 5.50 16 29 O -0.50 -7.55 17.08 -18.74 -0.32 -7.87 16 30 O -0.51 -4.04 10.34 -39.26 -0.41 -4.45 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.51 5.33 -51.93 -0.28 0.23 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.35 7.44 -51.93 -0.39 -0.03 16 38 H 0.40 2.98 8.39 -40.82 -0.34 2.63 16 39 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16 40 H 0.10 1.23 7.97 -51.92 -0.41 0.82 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 43 H 0.06 1.44 7.74 -51.93 -0.40 1.04 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.98 7.52 -51.93 -0.39 0.59 16 46 H 0.25 7.09 8.32 -40.82 -0.34 6.75 16 47 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 48 H 0.09 2.52 4.49 -51.93 -0.23 2.29 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 1.59 5.76 -51.93 -0.30 1.29 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.40 1.76 9.10 45.56 0.41 2.18 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -35.41 401.21 -8.40 -43.80 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.14 Total: 2.88 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 0.40 Total: 11.80 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -1.03 Total: -58.73 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.65 Total: -22.04 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.41 -8.40 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591868658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.552 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds