Wall clock time and date at job start Wed Apr 1 2020 01:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.62321 * 2 1 4 4 C 1.53235 * 109.62621 * 239.61219 * 2 1 3 5 5 N 1.46899 * 109.33611 * 186.46112 * 4 2 1 6 6 C 1.46907 * 111.00014 * 187.25134 * 5 4 2 7 7 C 1.52994 * 109.47143 * 169.65066 * 6 5 4 8 8 C 1.50700 * 109.47027 * 180.02562 * 7 6 5 9 9 O 1.20826 * 120.00183 * 0.02562 * 8 7 6 10 10 O 1.34236 * 119.99850 * 180.02562 * 8 7 6 11 11 C 1.46899 * 111.26931 * 63.10569 * 5 4 2 12 12 C 1.53240 * 109.36403 * 296.87772 * 11 5 4 13 13 N 1.47077 * 109.62500 * 120.58205 * 2 1 3 14 14 C 1.34771 * 120.88671 * 350.86727 * 13 2 1 15 15 O 1.21282 * 119.99626 * 4.75863 * 14 13 2 16 16 C 1.50702 * 120.00582 * 184.75486 * 14 13 2 17 17 H 1.09005 * 109.46683 * 320.00322 * 16 14 13 18 18 N 1.46900 * 109.47563 * 200.00568 * 16 14 13 19 19 C 1.52994 * 109.46833 * 80.00027 * 16 14 13 20 20 C 1.53006 * 109.47014 * 185.00544 * 19 16 14 21 21 C 1.53001 * 109.47211 * 180.02562 * 20 19 16 22 22 C 1.50694 * 109.47126 * 179.97438 * 21 20 19 23 23 H 1.08002 * 120.00191 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00234 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99903 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00104 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47412 * 89.99929 * 26 24 22 28 28 H 1.48507 * 109.46798 * 209.99496 * 26 24 22 29 29 H 1.48498 * 109.46959 * 329.99305 * 26 24 22 30 30 H 1.09001 * 109.47550 * 186.15534 * 1 2 3 31 31 H 1.09009 * 109.47318 * 306.15624 * 1 2 3 32 32 H 1.09003 * 109.47324 * 66.15310 * 1 2 3 33 33 H 1.08992 * 109.49560 * 66.50346 * 4 2 1 34 34 H 1.09000 * 109.49155 * 306.41443 * 4 2 1 35 35 H 1.09001 * 109.47117 * 289.65242 * 6 5 4 36 36 H 1.08995 * 109.46877 * 49.65166 * 6 5 4 37 37 H 1.09001 * 109.47258 * 300.00090 * 7 6 5 38 38 H 1.09008 * 109.47375 * 60.00094 * 7 6 5 39 39 H 0.96703 * 116.99425 * 180.02562 * 10 8 7 40 40 H 1.08996 * 109.49780 * 56.85513 * 11 5 4 41 41 H 1.09009 * 109.49154 * 176.91004 * 11 5 4 42 42 H 1.08991 * 109.63566 * 173.55429 * 12 11 5 43 43 H 1.09002 * 109.62609 * 294.14084 * 12 11 5 44 44 H 1.00895 * 110.99898 * 176.04834 * 18 16 14 45 45 H 1.00907 * 110.99331 * 299.99820 * 18 16 14 46 46 H 1.08997 * 109.47713 * 305.00373 * 19 16 14 47 47 H 1.08998 * 109.47158 * 65.00597 * 19 16 14 48 48 H 1.09001 * 109.47059 * 300.00058 * 20 19 16 49 49 H 1.08998 * 109.47114 * 60.00026 * 20 19 16 50 50 H 1.09001 * 109.46987 * 299.99895 * 21 20 19 51 51 H 1.09007 * 109.47030 * 59.99775 * 21 20 19 52 52 H 0.97001 * 120.00211 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7301 -1.2450 5 7 3.5054 -0.8624 -1.1623 6 6 4.0568 -1.4021 -2.4124 7 6 5.5821 -1.2855 -2.3892 8 6 6.1477 -1.8386 -3.6719 9 8 5.4068 -2.2802 -4.5180 10 8 7.4747 -1.8405 -3.8745 11 6 3.9015 -1.6871 -0.0130 12 6 3.4634 -0.9965 1.2830 13 7 2.0240 -0.7048 1.1926 14 6 1.1808 -1.0734 2.1772 15 8 -0.0130 -0.9025 2.0488 16 6 1.7211 -1.6982 3.4377 17 1 2.5268 -2.3876 3.1850 18 7 0.6465 -2.4304 4.1211 19 6 2.2583 -0.6022 4.3602 20 6 2.9189 -1.2429 5.5826 21 6 3.4555 -0.1469 6.5055 22 6 4.1056 -0.7780 7.7097 23 1 4.1329 -1.8533 7.8073 24 6 4.6646 0.0173 8.6874 25 7 4.6310 1.3266 8.5689 26 14 5.4710 -0.7650 10.1798 27 1 6.9098 -1.0011 9.8982 28 1 5.3377 0.1429 11.3474 29 1 4.8066 -2.0586 10.4803 30 1 -0.3634 -1.0217 0.1102 31 1 -0.3634 0.6064 0.8298 32 1 -0.3634 0.4155 -0.9399 33 1 1.7811 -0.1602 -2.1359 34 1 1.5923 -1.7203 -1.2990 35 1 3.7740 -2.4501 -2.5117 36 1 3.6621 -0.8376 -3.2571 37 1 5.8649 -0.2375 -2.2900 38 1 5.9770 -1.8500 -1.5444 39 1 7.7902 -2.2053 -4.7126 40 1 3.4233 -2.6639 -0.0841 41 1 4.9844 -1.8115 -0.0106 42 1 3.6517 -1.6551 2.1307 43 1 4.0182 -0.0665 1.4079 44 1 0.9979 -2.9117 4.9352 45 1 -0.1129 -1.8126 4.3660 46 1 2.9929 -0.0026 3.8228 47 1 1.4358 0.0355 4.6842 48 1 2.1843 -1.8425 6.1201 49 1 3.7414 -1.8806 5.2586 50 1 4.1901 0.4530 5.9682 51 1 2.6327 0.4904 6.8294 52 1 5.0246 1.8862 9.2566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594513694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:18 Heat of formation + Delta-G solvation = -119.932927 kcal Electronic energy + Delta-G solvation = -30576.450251 eV Core-core repulsion = 26382.861399 eV Total energy + Delta-G solvation = -4193.588852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89764 -40.57075 -38.52234 -36.65816 -36.23557 -35.23121 -33.54909 -32.80828 -31.73334 -31.24269 -28.78645 -27.72943 -26.32630 -25.34737 -24.22023 -22.97354 -22.45852 -21.10954 -20.82394 -20.18273 -18.89915 -18.57880 -17.40614 -17.07154 -16.69612 -16.36597 -16.23000 -15.70417 -15.37436 -15.12476 -15.04502 -14.77571 -14.52861 -14.46457 -14.12198 -13.70674 -13.60776 -13.42559 -12.86782 -12.74082 -12.65102 -12.55348 -12.33113 -12.07227 -12.00969 -11.91369 -11.78878 -11.70454 -11.51965 -11.33006 -11.19028 -11.08802 -11.04356 -10.83546 -10.66160 -10.58617 -9.80980 -9.51101 -9.19638 -9.04945 -8.98625 -8.54839 -8.43875 -8.38488 -6.04793 -4.07841 1.73816 2.45670 2.70792 2.82454 3.28163 3.34953 3.37846 3.52230 4.21272 4.34584 4.41809 4.44346 4.60849 4.67733 4.76195 4.84581 4.91890 4.97726 5.01037 5.03065 5.10926 5.19337 5.30725 5.31047 5.32141 5.38187 5.40030 5.45397 5.50061 5.65292 5.72608 5.76032 5.94496 6.03347 6.07884 6.23297 6.24632 6.49042 6.50807 6.55075 6.63548 6.71373 6.99732 7.14433 7.41411 7.41920 7.59180 7.60736 7.73345 7.94221 8.26662 8.36041 8.99314 9.56756 11.06351 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.002319 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.424135 B =12072.634822 C =14098.556491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.150 3.850 3 H 0.079 0.921 4 C 0.048 3.952 5 N -0.538 5.538 6 C 0.067 3.933 7 C -0.114 4.114 8 C 0.482 3.518 9 O -0.519 6.519 10 O -0.517 6.517 11 C 0.034 3.966 12 C 0.109 3.891 13 N -0.614 5.614 14 C 0.528 3.472 15 O -0.527 6.527 16 C 0.072 3.928 17 H 0.097 0.903 18 N -0.830 5.830 19 C -0.146 4.146 20 C -0.108 4.108 21 C 0.023 3.977 22 C -0.522 4.522 23 H 0.055 0.945 24 C 0.056 3.944 25 N -0.895 5.895 26 Si 0.892 3.108 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.411 0.589 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.351 0.649 45 H 0.349 0.651 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.047 0.953 49 H 0.050 0.950 50 H 0.015 0.985 51 H 0.014 0.986 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -4.979 -24.865 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.097 0.903 4 C -0.081 4.081 5 N -0.262 5.262 6 C -0.061 4.061 7 C -0.152 4.152 8 C 0.324 3.676 9 O -0.407 6.407 10 O -0.329 6.329 11 C -0.095 4.095 12 C -0.014 4.014 13 N -0.349 5.349 14 C 0.316 3.684 15 O -0.402 6.402 16 C -0.043 4.043 17 H 0.115 0.885 18 N -0.363 5.363 19 C -0.186 4.186 20 C -0.146 4.146 21 C -0.014 4.014 22 C -0.560 4.560 23 H 0.073 0.927 24 C -0.145 4.145 25 N -0.534 5.534 26 Si 0.719 3.281 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.166 0.834 45 H 0.162 0.838 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.034 0.966 51 H 0.033 0.967 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.022 -4.647 -25.300 25.723 hybrid contribution 0.879 -0.713 0.953 1.480 sum 0.901 -5.360 -24.347 24.946 Atomic orbital electron populations 1.22174 0.92193 1.04181 1.00824 1.21321 0.95555 0.95529 0.82950 0.90333 1.22588 0.86427 1.00191 0.98866 1.61862 1.11119 1.50632 1.02606 1.21842 0.92137 0.99553 0.92562 1.21353 0.96205 1.04668 0.92926 1.23467 0.79984 0.75070 0.89083 1.90744 1.60071 1.43860 1.46040 1.84548 1.25319 1.77547 1.45442 1.22634 1.01387 0.94855 0.90606 1.21943 0.80709 1.01489 0.97300 1.48178 1.08039 1.58810 1.19878 1.20667 0.86271 0.77374 0.84060 1.90702 1.15545 1.54299 1.79696 1.21529 0.94547 0.96057 0.92159 0.88517 1.58712 1.10626 1.33835 1.33077 1.22393 1.01065 0.97611 0.97490 1.21649 0.98548 0.99892 0.94482 1.19072 0.95912 0.93105 0.93356 1.21236 1.36775 0.92938 1.05091 0.92711 1.25034 0.96249 0.94827 0.98364 1.69961 1.45393 1.03338 1.34700 0.86603 0.79765 0.79191 0.82496 1.20644 1.21218 1.19876 0.91063 0.90521 0.93907 0.89470 0.93996 0.93619 0.89541 0.86373 0.87322 0.72990 0.93920 0.89086 0.88583 0.89992 0.83448 0.83751 0.91545 0.91789 0.93382 0.93131 0.96615 0.96740 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.62 37.16 0.28 -1.27 16 2 C 0.15 1.56 3.65 -67.49 -0.25 1.31 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.05 0.41 4.91 -3.70 -0.02 0.39 16 5 N -0.54 -4.19 4.63 -234.33 -1.08 -5.27 16 6 C 0.07 0.47 4.25 -3.82 -0.02 0.45 16 7 C -0.11 -0.63 5.75 -27.89 -0.16 -0.79 16 8 C 0.48 3.39 8.33 36.01 0.30 3.69 16 9 O -0.52 -5.34 16.74 -18.75 -0.31 -5.66 16 10 O -0.52 -2.72 13.42 -39.27 -0.53 -3.25 16 11 C 0.03 0.26 5.46 -3.70 -0.02 0.24 16 12 C 0.11 1.01 5.91 -3.57 -0.02 0.99 16 13 N -0.61 -7.03 3.01 -164.88 -0.50 -7.52 16 14 C 0.53 7.40 6.85 -10.99 -0.08 7.32 16 15 O -0.53 -8.64 11.76 5.56 0.07 -8.57 16 16 C 0.07 0.97 2.38 -68.87 -0.16 0.81 16 17 H 0.10 1.18 6.31 -51.93 -0.33 0.85 16 18 N -0.83 -11.46 8.94 -5.65 -0.05 -11.51 16 19 C -0.15 -2.27 4.78 -26.73 -0.13 -2.40 16 20 C -0.11 -2.00 4.92 -26.73 -0.13 -2.14 16 21 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 22 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 23 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 24 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 25 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 26 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 30 H 0.07 0.95 6.77 -51.93 -0.35 0.60 16 31 H 0.08 1.04 6.79 -51.92 -0.35 0.68 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.64 7.98 -51.93 -0.41 0.23 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 37 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.48 6.41 -51.92 -0.33 0.15 16 39 H 0.41 0.57 9.10 45.56 0.41 0.99 16 40 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.52 6.18 -51.92 -0.32 0.20 16 42 H 0.10 0.86 5.52 -51.93 -0.29 0.58 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.35 4.56 7.55 -39.29 -0.30 4.26 16 45 H 0.35 5.00 8.58 -39.29 -0.34 4.66 16 46 H 0.07 1.01 7.59 -51.93 -0.39 0.62 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.05 0.87 6.87 -51.93 -0.36 0.51 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -34.06 406.12 -9.48 -43.53 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.96 Total: 5.79 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.95 Total: -4.12 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.89 Total: -50.07 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.78 Total: -17.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.06 -9.48 -43.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594513694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.399 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds