Wall clock time and date at job start Wed Apr 1 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.63031 * 2 1 4 4 C 1.53238 * 109.62877 * 239.41788 * 2 1 3 5 5 N 1.46902 * 109.34419 * 186.46345 * 4 2 1 6 6 C 1.46902 * 111.00197 * 187.25213 * 5 4 2 7 7 C 1.52997 * 109.46681 * 169.99768 * 6 5 4 8 8 C 1.50704 * 109.46562 * 179.97438 * 7 6 5 9 9 O 1.20819 * 120.00203 * 359.97438 * 8 7 6 10 10 O 1.34230 * 119.99929 * 180.02562 * 8 7 6 11 11 C 1.46896 * 111.26749 * 63.10060 * 5 4 2 12 12 C 1.53702 * 109.25857 * 296.76028 * 11 5 4 13 13 N 1.47075 * 108.27796 * 54.08019 * 12 11 5 14 14 C 1.34774 * 120.88037 * 128.75351 * 13 12 11 15 15 O 1.21286 * 120.00130 * 174.20449 * 14 13 12 16 16 C 1.50698 * 119.99960 * 354.20560 * 14 13 12 17 17 H 1.09001 * 109.47496 * 39.99640 * 16 14 13 18 18 N 1.46904 * 109.47474 * 159.99909 * 16 14 13 19 19 C 1.53008 * 109.47179 * 279.99895 * 16 14 13 20 20 C 1.53001 * 109.46787 * 175.00118 * 19 16 14 21 21 C 1.53008 * 109.46787 * 179.97438 * 20 19 16 22 22 C 1.50701 * 109.47088 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99940 * 359.97438 * 22 21 20 24 24 C 1.37874 * 119.99797 * 180.02562 * 22 21 20 25 25 N 1.31508 * 120.00398 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99794 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.46999 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47029 * 119.99667 * 26 24 22 29 29 H 1.48495 * 109.47024 * 239.99705 * 26 24 22 30 30 H 1.08997 * 109.46916 * 307.90903 * 1 2 3 31 31 H 1.09004 * 109.46732 * 67.90335 * 1 2 3 32 32 H 1.08994 * 109.47234 * 187.90858 * 1 2 3 33 33 H 1.09009 * 109.49010 * 306.42098 * 4 2 1 34 34 H 1.09000 * 109.49449 * 66.49790 * 4 2 1 35 35 H 1.08995 * 109.47105 * 289.99578 * 6 5 4 36 36 H 1.09004 * 109.46825 * 49.99850 * 6 5 4 37 37 H 1.08997 * 109.47258 * 299.99209 * 7 6 5 38 38 H 1.08999 * 109.47332 * 59.99976 * 7 6 5 39 39 H 0.96693 * 117.00303 * 180.02562 * 10 8 7 40 40 H 1.08995 * 109.49711 * 56.86252 * 11 5 4 41 41 H 1.09003 * 109.49165 * 176.91601 * 11 5 4 42 42 H 1.09003 * 109.79483 * 294.42180 * 12 11 5 43 43 H 1.09000 * 109.70378 * 173.69168 * 12 11 5 44 44 H 1.00900 * 110.99675 * 296.04855 * 18 16 14 45 45 H 1.00901 * 110.99657 * 59.99478 * 18 16 14 46 46 H 1.08998 * 109.46888 * 294.99526 * 19 16 14 47 47 H 1.08997 * 109.46650 * 55.00173 * 19 16 14 48 48 H 1.08998 * 109.47356 * 299.99700 * 20 19 16 49 49 H 1.08994 * 109.47732 * 60.00099 * 20 19 16 50 50 H 1.08998 * 109.46928 * 299.99963 * 21 20 19 51 51 H 1.08997 * 109.46650 * 60.00055 * 21 20 19 52 52 H 0.96995 * 120.00633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7343 -1.2426 5 7 3.5055 -0.8664 -1.1594 6 6 4.0568 -1.4104 -2.4077 7 6 5.5827 -1.3016 -2.3812 8 6 6.1483 -1.8602 -3.6616 9 8 5.4071 -2.3005 -4.5080 10 8 7.4756 -1.8695 -3.8611 11 6 3.9015 -1.6872 -0.0073 12 6 3.4638 -0.9864 1.2887 13 7 2.0241 -0.7007 1.1950 14 6 1.1807 -1.0665 2.1806 15 8 0.0158 -0.7315 2.1373 16 6 1.6851 -1.8916 3.3363 17 1 2.6743 -1.5401 3.6294 18 7 0.7623 -1.7598 4.4717 19 6 1.7698 -3.3603 2.9158 20 6 2.3982 -4.1788 4.0455 21 6 2.4823 -5.6476 3.6252 22 6 3.1019 -6.4537 4.7376 23 1 3.4057 -5.9670 5.6526 24 6 3.2818 -7.8123 4.5867 25 7 2.9124 -8.4048 3.4724 26 14 4.0505 -8.8114 5.9654 27 1 4.3763 -7.9153 7.1038 28 1 3.0933 -9.8543 6.4140 29 1 5.2934 -9.4586 5.4740 30 1 -0.3633 0.6314 0.8108 31 1 -0.3633 0.3866 -0.9522 32 1 -0.3633 -1.0178 0.1414 33 1 1.5923 -1.7248 -1.2932 34 1 1.7810 -0.1675 -2.1354 35 1 3.7688 -2.4569 -2.5065 36 1 3.6668 -0.8447 -3.2540 37 1 5.8707 -0.2550 -2.2826 38 1 5.9726 -1.8672 -1.5350 39 1 7.7913 -2.2375 -4.6977 40 1 3.4233 -2.6643 -0.0752 41 1 4.9844 -1.8116 -0.0045 42 1 4.0152 -0.0537 1.4084 43 1 3.6530 -1.6388 2.1412 44 1 0.7381 -0.8094 4.8095 45 1 -0.1624 -2.0795 4.2250 46 1 0.7683 -3.7371 2.7080 47 1 2.3839 -3.4467 2.0194 48 1 3.3997 -3.8021 4.2534 49 1 1.7842 -4.0924 4.9418 50 1 1.4807 -6.0240 3.4176 51 1 3.0962 -5.7343 2.7287 52 1 3.0386 -9.3607 3.3664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594513695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:21 Heat of formation + Delta-G solvation = -122.380683 kcal Electronic energy + Delta-G solvation = -30964.977820 eV Core-core repulsion = 26771.282825 eV Total energy + Delta-G solvation = -4193.694994 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91749 -40.55031 -38.53858 -36.57428 -36.00801 -35.28663 -33.52163 -32.75991 -31.68366 -31.35661 -28.71661 -27.85122 -26.32384 -25.14593 -24.20485 -22.96126 -22.32899 -21.09273 -20.77197 -20.03914 -18.85677 -18.49435 -17.33854 -17.00575 -16.67581 -16.44656 -16.23032 -15.76629 -15.48112 -15.41507 -14.97693 -14.86986 -14.45991 -14.31451 -13.94692 -13.90445 -13.47981 -13.24464 -12.98713 -12.73805 -12.62358 -12.39176 -12.30569 -11.94494 -11.89512 -11.81472 -11.66930 -11.64053 -11.43725 -11.28805 -11.15222 -11.09898 -10.95633 -10.77181 -10.52321 -10.42467 -9.72873 -9.57884 -9.22671 -9.04818 -8.99210 -8.58471 -8.43931 -8.31276 -5.96834 -3.98524 1.82997 2.51540 2.55189 2.82861 3.32817 3.40439 3.44961 3.57943 4.27786 4.35931 4.48609 4.50403 4.60319 4.62556 4.73857 4.85220 4.95834 4.99754 5.02887 5.04987 5.13295 5.18546 5.33989 5.37951 5.39055 5.39438 5.44542 5.47781 5.52679 5.60884 5.69092 5.91104 6.00911 6.08290 6.12266 6.18312 6.40957 6.45860 6.54218 6.63084 6.79509 6.99134 7.10268 7.22121 7.32913 7.50351 7.51617 7.73225 7.88052 8.04486 8.10937 8.47933 9.09417 9.65537 11.14566 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007414 B = 0.003051 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3775.826110 B = 9176.406259 C =12262.636398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.077 0.923 4 C 0.046 3.954 5 N -0.538 5.538 6 C 0.066 3.934 7 C -0.113 4.113 8 C 0.481 3.519 9 O -0.517 6.517 10 O -0.517 6.517 11 C 0.031 3.969 12 C 0.109 3.891 13 N -0.610 5.610 14 C 0.486 3.514 15 O -0.542 6.542 16 C 0.074 3.926 17 H 0.099 0.901 18 N -0.811 5.811 19 C -0.102 4.102 20 C -0.099 4.099 21 C 0.020 3.980 22 C -0.515 4.515 23 H 0.056 0.944 24 C 0.055 3.945 25 N -0.897 5.897 26 Si 0.890 3.110 27 H -0.272 1.272 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.411 0.589 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.337 0.663 45 H 0.349 0.651 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.013 0.987 51 H 0.011 0.989 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 20.694 -12.795 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.095 0.905 4 C -0.082 4.082 5 N -0.262 5.262 6 C -0.062 4.062 7 C -0.151 4.151 8 C 0.323 3.677 9 O -0.405 6.405 10 O -0.329 6.329 11 C -0.098 4.098 12 C -0.014 4.014 13 N -0.345 5.345 14 C 0.273 3.727 15 O -0.420 6.420 16 C -0.041 4.041 17 H 0.117 0.883 18 N -0.340 5.340 19 C -0.140 4.140 20 C -0.137 4.137 21 C -0.017 4.017 22 C -0.554 4.554 23 H 0.074 0.926 24 C -0.146 4.146 25 N -0.537 5.537 26 Si 0.718 3.282 27 H -0.197 1.197 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.149 0.851 45 H 0.164 0.836 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.031 0.969 51 H 0.029 0.971 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.308 20.681 -12.292 24.441 hybrid contribution -0.027 -1.113 -0.827 1.387 sum 4.281 19.568 -13.119 23.945 Atomic orbital electron populations 1.22138 0.92377 1.04019 1.01012 1.21320 0.95430 0.95513 0.83289 0.90540 1.22581 0.86721 1.00319 0.98624 1.61894 1.10917 1.50714 1.02718 1.21852 0.92127 0.99833 0.92424 1.21339 0.96208 1.04374 0.93138 1.23441 0.79998 0.75195 0.89020 1.90749 1.60064 1.43825 1.45891 1.84531 1.25298 1.77477 1.45623 1.22726 1.01631 0.95246 0.90187 1.22031 0.80304 1.01029 0.98047 1.48362 1.08176 1.58350 1.19639 1.22470 0.86217 0.79601 0.84381 1.90701 1.17747 1.55839 1.77709 1.21827 0.97921 0.96925 0.87455 0.88323 1.59059 1.14705 1.27714 1.32489 1.21645 1.01941 0.90433 1.00018 1.21537 0.98665 0.96963 0.96525 1.19114 0.96852 0.89297 0.96434 1.21313 1.39709 0.92721 1.01643 0.92594 1.25030 0.95856 0.98052 0.95628 1.69973 1.48125 1.10169 1.25445 0.86569 0.78943 0.80227 0.82477 1.19686 1.21081 1.21121 0.90142 0.93669 0.91709 0.93792 0.89507 0.93311 0.89592 0.86579 0.87227 0.72974 0.93196 0.88994 0.90405 0.88251 0.85057 0.83632 0.92038 0.92162 0.93718 0.91799 0.96857 0.97079 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.63 37.16 0.28 -1.26 16 2 C 0.15 1.49 3.65 -67.49 -0.25 1.25 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.05 0.42 4.91 -3.70 -0.02 0.40 16 5 N -0.54 -4.50 4.63 -234.02 -1.08 -5.59 16 6 C 0.07 0.53 4.25 -3.82 -0.02 0.51 16 7 C -0.11 -0.73 5.74 -27.88 -0.16 -0.89 16 8 C 0.48 3.94 8.33 36.01 0.30 4.24 16 9 O -0.52 -6.01 16.74 -18.74 -0.31 -6.32 16 10 O -0.52 -3.23 13.42 -39.26 -0.53 -3.76 16 11 C 0.03 0.27 5.48 -3.46 -0.02 0.25 16 12 C 0.11 0.98 6.11 -3.36 -0.02 0.96 16 13 N -0.61 -6.70 3.00 -164.65 -0.49 -7.19 16 14 C 0.49 6.40 6.71 -10.99 -0.07 6.32 16 15 O -0.54 -8.28 11.97 5.55 0.07 -8.22 16 16 C 0.07 0.98 2.29 -68.86 -0.16 0.83 16 17 H 0.10 1.18 6.59 -51.93 -0.34 0.83 16 18 N -0.81 -10.85 8.44 -5.65 -0.05 -10.90 16 19 C -0.10 -1.65 4.60 -26.73 -0.12 -1.77 16 20 C -0.10 -1.97 5.04 -26.73 -0.13 -2.11 16 21 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 22 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 23 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 24 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 25 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 26 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.08 1.03 6.60 -51.93 -0.34 0.68 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.88 6.96 -51.93 -0.36 0.51 16 33 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.09 0.67 7.99 -51.93 -0.41 0.26 16 35 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.09 0.70 7.93 -51.93 -0.41 0.28 16 37 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.62 6.40 -51.93 -0.33 0.29 16 39 H 0.41 1.00 9.10 45.56 0.41 1.42 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.63 6.16 -51.93 -0.32 0.31 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.91 5.10 -51.93 -0.27 0.64 16 44 H 0.34 3.92 9.06 -39.29 -0.36 3.56 16 45 H 0.35 4.88 8.58 -39.29 -0.34 4.55 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 0.93 7.39 -51.93 -0.38 0.55 16 48 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 1.33 7.75 -51.93 -0.40 0.92 16 50 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 52 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -34.57 407.81 -9.52 -44.09 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.04 Total: 5.70 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.94 Total: -4.30 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.89 Total: -50.02 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.77 Total: -18.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.57 -9.52 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594513695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.291 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds