Wall clock time and date at job start Wed Apr 1 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.63031 * 2 1 4 4 C 1.53238 * 109.62877 * 239.41788 * 2 1 3 5 5 N 1.46902 * 109.34419 * 186.46345 * 4 2 1 6 6 C 1.46902 * 111.00197 * 187.25213 * 5 4 2 7 7 C 1.52997 * 109.46681 * 169.99768 * 6 5 4 8 8 C 1.50704 * 109.46562 * 179.97438 * 7 6 5 9 9 O 1.20819 * 120.00203 * 359.97438 * 8 7 6 10 10 O 1.34230 * 119.99929 * 180.02562 * 8 7 6 11 11 C 1.46896 * 111.26749 * 63.10060 * 5 4 2 12 12 C 1.53702 * 109.25857 * 296.76028 * 11 5 4 13 13 N 1.47075 * 108.27796 * 54.08019 * 12 11 5 14 14 C 1.34774 * 120.88037 * 128.75351 * 13 12 11 15 15 O 1.21286 * 120.00130 * 174.20449 * 14 13 12 16 16 C 1.50698 * 119.99960 * 354.20560 * 14 13 12 17 17 H 1.09001 * 109.47496 * 39.99640 * 16 14 13 18 18 N 1.46904 * 109.47474 * 159.99909 * 16 14 13 19 19 C 1.53008 * 109.47179 * 279.99895 * 16 14 13 20 20 C 1.53001 * 109.46787 * 175.00118 * 19 16 14 21 21 C 1.53008 * 109.46787 * 179.97438 * 20 19 16 22 22 C 1.50701 * 109.47088 * 179.97438 * 21 20 19 23 23 H 1.08001 * 119.99940 * 359.97438 * 22 21 20 24 24 C 1.37874 * 119.99797 * 180.02562 * 22 21 20 25 25 N 1.31508 * 120.00398 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99794 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.46999 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47029 * 119.99667 * 26 24 22 29 29 H 1.48495 * 109.47024 * 239.99705 * 26 24 22 30 30 H 1.08997 * 109.46916 * 307.90903 * 1 2 3 31 31 H 1.09004 * 109.46732 * 67.90335 * 1 2 3 32 32 H 1.08994 * 109.47234 * 187.90858 * 1 2 3 33 33 H 1.09009 * 109.49010 * 306.42098 * 4 2 1 34 34 H 1.09000 * 109.49449 * 66.49790 * 4 2 1 35 35 H 1.08995 * 109.47105 * 289.99578 * 6 5 4 36 36 H 1.09004 * 109.46825 * 49.99850 * 6 5 4 37 37 H 1.08997 * 109.47258 * 299.99209 * 7 6 5 38 38 H 1.08999 * 109.47332 * 59.99976 * 7 6 5 39 39 H 0.96693 * 117.00303 * 180.02562 * 10 8 7 40 40 H 1.08995 * 109.49711 * 56.86252 * 11 5 4 41 41 H 1.09003 * 109.49165 * 176.91601 * 11 5 4 42 42 H 1.09003 * 109.79483 * 294.42180 * 12 11 5 43 43 H 1.09000 * 109.70378 * 173.69168 * 12 11 5 44 44 H 1.00900 * 110.99675 * 296.04855 * 18 16 14 45 45 H 1.00901 * 110.99657 * 59.99478 * 18 16 14 46 46 H 1.08998 * 109.46888 * 294.99526 * 19 16 14 47 47 H 1.08997 * 109.46650 * 55.00173 * 19 16 14 48 48 H 1.08998 * 109.47356 * 299.99700 * 20 19 16 49 49 H 1.08994 * 109.47732 * 60.00099 * 20 19 16 50 50 H 1.08998 * 109.46928 * 299.99963 * 21 20 19 51 51 H 1.08997 * 109.46650 * 60.00055 * 21 20 19 52 52 H 0.96995 * 120.00633 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7343 -1.2426 5 7 3.5055 -0.8664 -1.1594 6 6 4.0568 -1.4104 -2.4077 7 6 5.5827 -1.3016 -2.3812 8 6 6.1483 -1.8602 -3.6616 9 8 5.4071 -2.3005 -4.5080 10 8 7.4756 -1.8695 -3.8611 11 6 3.9015 -1.6872 -0.0073 12 6 3.4638 -0.9864 1.2887 13 7 2.0241 -0.7007 1.1950 14 6 1.1807 -1.0665 2.1806 15 8 0.0158 -0.7315 2.1373 16 6 1.6851 -1.8916 3.3363 17 1 2.6743 -1.5401 3.6294 18 7 0.7623 -1.7598 4.4717 19 6 1.7698 -3.3603 2.9158 20 6 2.3982 -4.1788 4.0455 21 6 2.4823 -5.6476 3.6252 22 6 3.1019 -6.4537 4.7376 23 1 3.4057 -5.9670 5.6526 24 6 3.2818 -7.8123 4.5867 25 7 2.9124 -8.4048 3.4724 26 14 4.0505 -8.8114 5.9654 27 1 4.3763 -7.9153 7.1038 28 1 3.0933 -9.8543 6.4140 29 1 5.2934 -9.4586 5.4740 30 1 -0.3633 0.6314 0.8108 31 1 -0.3633 0.3866 -0.9522 32 1 -0.3633 -1.0178 0.1414 33 1 1.5923 -1.7248 -1.2932 34 1 1.7810 -0.1675 -2.1354 35 1 3.7688 -2.4569 -2.5065 36 1 3.6668 -0.8447 -3.2540 37 1 5.8707 -0.2550 -2.2826 38 1 5.9726 -1.8672 -1.5350 39 1 7.7913 -2.2375 -4.6977 40 1 3.4233 -2.6643 -0.0752 41 1 4.9844 -1.8116 -0.0045 42 1 4.0152 -0.0537 1.4084 43 1 3.6530 -1.6388 2.1412 44 1 0.7381 -0.8094 4.8095 45 1 -0.1624 -2.0795 4.2250 46 1 0.7683 -3.7371 2.7080 47 1 2.3839 -3.4467 2.0194 48 1 3.3997 -3.8021 4.2534 49 1 1.7842 -4.0924 4.9418 50 1 1.4807 -6.0240 3.4176 51 1 3.0962 -5.7343 2.7287 52 1 3.0386 -9.3607 3.3664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594513695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:20 Heat of formation + Delta-G solvation = -148.966634 kcal Electronic energy + Delta-G solvation = -30966.130673 eV Core-core repulsion = 26771.282825 eV Total energy + Delta-G solvation = -4194.847848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81226 -41.23970 -39.37899 -37.35153 -37.15902 -36.13717 -35.34317 -33.75059 -33.06535 -32.34528 -29.72004 -29.29023 -27.14202 -26.67069 -24.92284 -24.38286 -23.25529 -22.09355 -21.69953 -21.39533 -19.81504 -19.12341 -18.44414 -18.21119 -17.74207 -17.47407 -17.18979 -16.80782 -16.52802 -16.43768 -16.15531 -15.75715 -15.60568 -15.41362 -15.19623 -14.70704 -14.52951 -14.26374 -14.12152 -14.04847 -13.64235 -13.50005 -13.38768 -13.09449 -13.06935 -12.84173 -12.68351 -12.55820 -12.51487 -12.45263 -12.35049 -12.29689 -12.17255 -12.04465 -11.78938 -11.64353 -11.41856 -11.26994 -11.10211 -10.61231 -10.51742 -9.82654 -9.52386 -9.39144 -8.16982 -6.27429 1.21264 1.41412 1.42290 1.49494 1.55753 1.88407 2.06919 2.43634 2.90273 3.16411 3.40315 3.60565 3.67112 3.80570 3.86269 3.96795 3.99894 4.11279 4.16053 4.18236 4.30695 4.31702 4.42489 4.50179 4.57075 4.58414 4.65867 4.66895 4.75631 4.79176 4.84645 4.87086 4.91381 4.98961 5.12164 5.14501 5.25550 5.28529 5.33993 5.57504 5.61204 5.63391 5.82774 5.83873 5.88820 5.93599 6.05921 6.30463 6.37657 6.49127 6.90728 6.99110 7.11041 7.41981 8.94920 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007414 B = 0.003051 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3775.826110 B = 9176.406259 C =12262.636398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.148 3.852 3 H 0.094 0.906 4 C 0.049 3.951 5 N -0.526 5.526 6 C 0.068 3.932 7 C -0.106 4.106 8 C 0.485 3.515 9 O -0.559 6.559 10 O -0.513 6.513 11 C 0.029 3.971 12 C 0.106 3.894 13 N -0.608 5.608 14 C 0.484 3.516 15 O -0.567 6.567 16 C 0.084 3.916 17 H 0.121 0.879 18 N -0.818 5.818 19 C -0.090 4.090 20 C -0.082 4.082 21 C 0.023 3.977 22 C -0.536 4.536 23 H 0.061 0.939 24 C -0.003 4.003 25 N -0.936 5.936 26 Si 0.963 3.037 27 H -0.260 1.260 28 H -0.282 1.282 29 H -0.277 1.277 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.020 0.980 34 H 0.104 0.896 35 H 0.025 0.975 36 H 0.086 0.914 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.427 0.573 40 H 0.023 0.977 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.349 0.651 45 H 0.344 0.656 46 H 0.040 0.960 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.056 0.944 50 H -0.020 1.020 51 H -0.009 1.009 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 22.440 -12.094 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.045 3.955 3 H 0.112 0.888 4 C -0.080 4.080 5 N -0.250 5.250 6 C -0.060 4.060 7 C -0.144 4.144 8 C 0.330 3.670 9 O -0.451 6.451 10 O -0.327 6.327 11 C -0.099 4.099 12 C -0.016 4.016 13 N -0.342 5.342 14 C 0.271 3.729 15 O -0.447 6.447 16 C -0.031 4.031 17 H 0.139 0.861 18 N -0.347 5.347 19 C -0.128 4.128 20 C -0.119 4.119 21 C -0.014 4.014 22 C -0.574 4.574 23 H 0.079 0.921 24 C -0.200 4.200 25 N -0.577 5.577 26 Si 0.788 3.212 27 H -0.184 1.184 28 H -0.208 1.208 29 H -0.203 1.203 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.123 0.877 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.289 0.711 40 H 0.041 0.959 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.163 0.837 45 H 0.158 0.842 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.074 0.926 50 H -0.002 1.002 51 H 0.010 0.990 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.556 22.454 -11.598 26.109 hybrid contribution -0.688 -1.668 -1.119 2.123 sum 5.868 20.786 -12.716 25.064 Atomic orbital electron populations 1.21982 0.93359 1.01837 1.01476 1.21399 0.94633 0.96314 0.83120 0.88833 1.22550 0.87230 0.99237 0.98939 1.61954 1.10170 1.50160 1.02736 1.21805 0.93549 0.98382 0.92222 1.21337 0.94648 1.05793 0.92603 1.23737 0.80203 0.74156 0.88946 1.90742 1.61067 1.45841 1.47412 1.84498 1.24188 1.77175 1.46812 1.22782 1.02880 0.93942 0.90302 1.22231 0.79079 1.02267 0.98052 1.48441 1.08956 1.57550 1.19204 1.22352 0.86028 0.79723 0.84764 1.90705 1.18792 1.56958 1.78274 1.21664 0.99078 0.94681 0.87714 0.86106 1.59060 1.14415 1.28678 1.32498 1.21415 1.00392 0.92124 0.98902 1.21274 0.99672 0.93780 0.97224 1.19036 0.94210 0.92871 0.95243 1.21756 1.39769 0.93523 1.02378 0.92054 1.25983 0.96316 0.99445 0.98253 1.70109 1.49299 1.10639 1.27656 0.85426 0.78018 0.78448 0.79341 1.18351 1.20779 1.20298 0.91698 0.91596 0.94658 0.96132 0.87744 0.95644 0.89562 0.84312 0.86036 0.71121 0.95866 0.86575 0.87889 0.88282 0.83735 0.84228 0.94143 0.91599 0.92247 0.92553 1.00163 0.99043 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 7.63 71.98 0.55 -2.30 16 2 C 0.15 2.79 3.65 44.96 0.16 2.95 16 3 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.05 0.85 4.91 86.38 0.42 1.27 16 5 N -0.53 -7.87 4.63 -894.30 -4.14 -12.01 16 6 C 0.07 1.03 4.25 86.30 0.37 1.39 16 7 C -0.11 -1.13 5.74 29.85 0.17 -0.96 16 8 C 0.49 7.31 8.33 71.24 0.59 7.90 16 9 O -0.56 -12.89 16.74 21.98 0.37 -12.52 16 10 O -0.51 -5.42 13.42 -51.41 -0.69 -6.11 16 11 C 0.03 0.46 5.48 86.54 0.47 0.94 16 12 C 0.11 1.65 6.11 86.51 0.53 2.18 16 13 N -0.61 -12.55 3.00 -793.21 -2.38 -14.93 16 14 C 0.48 12.47 6.71 87.66 0.59 13.06 16 15 O -0.57 -17.48 11.97 -3.05 -0.04 -17.51 16 16 C 0.08 2.15 2.29 44.17 0.10 2.25 16 17 H 0.12 2.57 6.59 -2.39 -0.02 2.56 16 18 N -0.82 -21.32 8.44 -171.78 -1.45 -22.77 16 19 C -0.09 -2.93 4.60 30.60 0.14 -2.79 16 20 C -0.08 -3.25 5.04 30.60 0.15 -3.10 16 21 C 0.02 1.24 4.97 29.85 0.15 1.38 16 22 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 23 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 24 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 25 N -0.94 -57.55 13.29 21.44 0.28 -57.27 16 26 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 29 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 30 H 0.06 1.65 6.60 -2.39 -0.02 1.63 16 31 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.03 0.98 6.96 -2.39 -0.02 0.96 16 33 H 0.02 0.45 8.14 -2.38 -0.02 0.44 16 34 H 0.10 1.45 7.99 -2.39 -0.02 1.43 16 35 H 0.03 0.50 8.08 -2.39 -0.02 0.49 16 36 H 0.09 1.30 7.93 -2.38 -0.02 1.29 16 37 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.12 1.04 6.40 -2.39 -0.02 1.02 16 39 H 0.43 1.40 9.10 -74.06 -0.67 0.73 16 40 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.12 1.27 6.16 -2.39 -0.01 1.26 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.57 5.10 -2.39 -0.01 1.56 16 44 H 0.35 7.68 9.06 -89.69 -0.81 6.87 16 45 H 0.34 9.70 8.58 -89.69 -0.77 8.93 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 2.06 7.39 -2.39 -0.02 2.04 16 48 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 49 H 0.06 2.33 7.75 -2.39 -0.02 2.31 16 50 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 51 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 52 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -76.50 407.81 -2.23 -78.72 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -1.31 Total: 23.82 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.10 Total: -5.85 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -7.69 Total: -106.98 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.36 Total: -36.15 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -76.50 -2.23 -78.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594513695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.243 kcal (2) G-P(sol) polarization free energy of solvation -76.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds