Wall clock time and date at job start Wed Apr 1 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.78783 * 2 1 4 4 C 1.53240 * 109.62775 * 120.48844 * 2 1 3 5 5 N 1.46902 * 109.36324 * 173.55149 * 4 2 1 6 6 C 1.46898 * 110.99940 * 172.72915 * 5 4 2 7 7 C 1.53001 * 109.46932 * 189.99946 * 6 5 4 8 8 C 1.50701 * 109.47194 * 180.02562 * 7 6 5 9 9 O 1.20827 * 119.99836 * 0.02562 * 8 7 6 10 10 O 1.34231 * 120.00064 * 180.02562 * 8 7 6 11 11 C 1.46894 * 111.26800 * 296.88184 * 5 4 2 12 12 C 1.53236 * 109.34381 * 63.10431 * 11 5 4 13 13 N 1.47083 * 108.52174 * 306.16976 * 12 11 5 14 14 C 1.34770 * 120.88069 * 231.20949 * 13 12 11 15 15 O 1.21291 * 119.99904 * 175.34469 * 14 13 12 16 16 C 1.50699 * 120.00482 * 355.33981 * 14 13 12 17 17 H 1.09008 * 109.46726 * 320.00188 * 16 14 13 18 18 N 1.46896 * 109.47455 * 200.00687 * 16 14 13 19 19 C 1.52996 * 109.47232 * 80.00005 * 16 14 13 20 20 C 1.52994 * 109.47468 * 185.00213 * 19 16 14 21 21 C 1.53003 * 109.47481 * 180.02562 * 20 19 16 22 22 C 1.50695 * 109.47177 * 180.02562 * 21 20 19 23 23 H 1.08002 * 120.00125 * 359.97438 * 22 21 20 24 24 C 1.37880 * 120.00048 * 180.02562 * 22 21 20 25 25 N 1.31521 * 119.99810 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00026 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47383 * 90.00181 * 26 24 22 28 28 H 1.48501 * 109.46652 * 209.99616 * 26 24 22 29 29 H 1.48497 * 109.47138 * 329.99646 * 26 24 22 30 30 H 1.08996 * 109.47067 * 293.78411 * 1 2 3 31 31 H 1.09003 * 109.46916 * 53.78304 * 1 2 3 32 32 H 1.08997 * 109.47240 * 173.78159 * 1 2 3 33 33 H 1.09001 * 109.49556 * 53.57670 * 4 2 1 34 34 H 1.09003 * 109.49099 * 293.52383 * 4 2 1 35 35 H 1.08997 * 109.47286 * 310.00143 * 6 5 4 36 36 H 1.09001 * 109.47357 * 70.00270 * 6 5 4 37 37 H 1.08997 * 109.47296 * 300.00191 * 7 6 5 38 38 H 1.08998 * 109.47301 * 60.00219 * 7 6 5 39 39 H 0.96700 * 116.99416 * 180.02562 * 10 8 7 40 40 H 1.09001 * 109.49272 * 183.06433 * 11 5 4 41 41 H 1.09001 * 109.49265 * 303.11528 * 11 5 4 42 42 H 1.09000 * 109.63184 * 65.87681 * 12 11 5 43 43 H 1.08997 * 109.63125 * 186.26574 * 12 11 5 44 44 H 1.00900 * 110.99981 * 176.04716 * 18 16 14 45 45 H 1.00901 * 110.99675 * 299.99460 * 18 16 14 46 46 H 1.08999 * 109.47106 * 305.00756 * 19 16 14 47 47 H 1.08999 * 109.46906 * 65.00049 * 19 16 14 48 48 H 1.08999 * 109.47401 * 300.00363 * 20 19 16 49 49 H 1.09003 * 109.47219 * 60.00524 * 20 19 16 50 50 H 1.08999 * 109.46890 * 300.00419 * 21 20 19 51 51 H 1.08999 * 109.47109 * 59.99704 * 21 20 19 52 52 H 0.97002 * 120.00125 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7323 1.2438 5 7 3.5055 -0.8645 1.1615 6 6 4.0563 -1.4060 2.4110 7 6 5.5822 -1.2973 2.3850 8 6 6.1474 -1.8534 3.6666 9 8 5.4057 -2.2921 4.5137 10 8 7.4746 -1.8613 3.8671 11 6 3.9021 -1.6874 0.0111 12 6 3.4640 -0.9945 -1.2836 13 7 2.0251 -0.7033 -1.1939 14 6 1.1822 -1.0714 -2.1789 15 8 -0.0117 -0.8993 -2.0513 16 6 1.7228 -1.6967 -3.4390 17 1 2.6420 -1.1888 -3.7311 18 7 0.7300 -1.5688 -4.5141 19 6 2.0157 -3.1773 -3.1885 20 6 2.6798 -3.7824 -4.4269 21 6 2.9721 -5.2633 -4.1766 22 6 3.6268 -5.8591 -5.3961 23 1 3.8152 -5.2433 -6.2632 24 6 3.9844 -7.1907 -5.4055 25 7 3.7545 -7.9407 -4.3498 26 14 4.7953 -7.9295 -6.9174 27 1 6.2696 -7.7907 -6.8061 28 1 4.4397 -9.3679 -7.0168 29 1 4.3213 -7.2173 -8.1312 30 1 -0.3633 0.4144 0.9403 31 1 -0.3633 0.6072 -0.8291 32 1 -0.3633 -1.0216 -0.1113 33 1 1.5923 -1.7226 1.2962 34 1 1.7806 -0.1641 2.1357 35 1 3.6660 -0.8388 3.2560 36 1 3.7683 -2.4524 2.5117 37 1 5.9725 -1.8645 1.5400 38 1 5.8703 -0.2509 2.2844 39 1 7.7898 -2.2285 4.7043 40 1 4.9850 -1.8115 0.0088 41 1 3.4242 -2.6645 0.0809 42 1 4.0188 -0.0644 -1.4070 43 1 3.6555 -1.6505 -2.1328 44 1 1.0937 -1.9229 -5.3861 45 1 -0.1319 -2.0319 -4.2672 46 1 2.6839 -3.2758 -2.3330 47 1 1.0829 -3.7025 -2.9833 48 1 2.0116 -3.6839 -5.2823 49 1 3.6127 -3.2573 -4.6321 50 1 3.6401 -5.3622 -3.3210 51 1 2.0391 -5.7882 -3.9716 52 1 4.0064 -8.8775 -4.3562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594513696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:24 Heat of formation + Delta-G solvation = -120.710610 kcal Electronic energy + Delta-G solvation = -30921.416880 eV Core-core repulsion = 26727.794306 eV Total energy + Delta-G solvation = -4193.622574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86146 -40.52002 -38.46601 -36.57938 -36.27099 -35.20355 -33.54352 -32.78775 -31.66001 -31.27321 -28.72135 -27.80102 -26.28485 -25.33257 -24.16868 -22.91462 -22.38786 -21.16482 -20.76088 -20.23824 -18.81418 -18.49188 -17.38575 -17.03788 -16.62206 -16.36134 -16.21576 -15.63765 -15.36615 -15.14301 -15.04596 -14.71313 -14.55794 -14.43297 -13.96446 -13.78042 -13.49519 -13.45590 -12.92949 -12.70902 -12.57995 -12.46717 -12.30960 -12.03281 -11.93347 -11.86512 -11.82059 -11.66905 -11.50603 -11.24995 -11.23182 -11.08410 -10.95717 -10.84280 -10.68527 -10.60001 -9.83318 -9.53171 -9.21692 -9.06147 -8.93124 -8.54859 -8.43679 -8.38742 -6.06698 -4.09832 1.82744 2.53226 2.70386 2.83856 3.27017 3.33923 3.36859 3.59446 4.28740 4.36491 4.40804 4.52095 4.66243 4.70901 4.82622 4.87238 4.99171 5.05058 5.06470 5.07164 5.16787 5.20293 5.28652 5.29328 5.37142 5.40852 5.47152 5.49872 5.54803 5.65585 5.68613 5.77749 5.91553 6.07687 6.12006 6.20700 6.25284 6.51595 6.52362 6.56669 6.66223 6.69417 6.97122 7.14705 7.42073 7.50179 7.57772 7.59556 7.70391 7.92037 8.26727 8.33961 8.97300 9.54982 11.04399 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007653 B = 0.002962 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.804695 B = 9451.965889 C =12526.797113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.151 3.849 3 H 0.078 0.922 4 C 0.046 3.954 5 N -0.538 5.538 6 C 0.066 3.934 7 C -0.113 4.113 8 C 0.482 3.518 9 O -0.518 6.518 10 O -0.517 6.517 11 C 0.032 3.968 12 C 0.108 3.892 13 N -0.614 5.614 14 C 0.528 3.472 15 O -0.526 6.526 16 C 0.073 3.927 17 H 0.098 0.902 18 N -0.829 5.829 19 C -0.148 4.148 20 C -0.108 4.108 21 C 0.023 3.977 22 C -0.523 4.523 23 H 0.055 0.945 24 C 0.057 3.943 25 N -0.895 5.895 26 Si 0.892 3.108 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.411 0.589 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.351 0.649 45 H 0.348 0.652 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.014 0.986 51 H 0.014 0.986 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 17.623 14.492 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 H 0.096 0.904 4 C -0.083 4.083 5 N -0.262 5.262 6 C -0.062 4.062 7 C -0.151 4.151 8 C 0.324 3.676 9 O -0.406 6.406 10 O -0.329 6.329 11 C -0.097 4.097 12 C -0.016 4.016 13 N -0.350 5.350 14 C 0.316 3.684 15 O -0.402 6.402 16 C -0.042 4.042 17 H 0.116 0.884 18 N -0.361 5.361 19 C -0.188 4.188 20 C -0.146 4.146 21 C -0.014 4.014 22 C -0.561 4.561 23 H 0.073 0.927 24 C -0.144 4.144 25 N -0.534 5.534 26 Si 0.720 3.280 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.270 0.730 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.166 0.834 45 H 0.162 0.838 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.033 0.967 51 H 0.032 0.968 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.251 18.834 14.528 23.892 hybrid contribution 0.683 -2.761 -0.029 2.844 sum 2.934 16.073 14.499 21.844 Atomic orbital electron populations 1.22168 0.92214 1.04207 1.00795 1.21326 0.95510 0.95371 0.82992 0.90448 1.22601 0.86620 1.00312 0.98768 1.61891 1.10999 1.50648 1.02669 1.21849 0.92118 0.99768 0.92466 1.21345 0.96232 1.04450 0.93076 1.23452 0.79990 0.75134 0.89053 1.90748 1.60038 1.43891 1.45927 1.84538 1.25313 1.77488 1.45561 1.22631 1.01575 0.95141 0.90329 1.21930 0.80568 1.01125 0.97930 1.48190 1.08063 1.58863 1.19864 1.20679 0.86341 0.77175 0.84164 1.90703 1.15598 1.54265 1.79663 1.21504 0.96298 0.96048 0.90382 0.88406 1.58695 1.06787 1.66043 1.04611 1.22465 1.01870 0.93436 1.01045 1.21655 0.98579 0.99803 0.94588 1.19065 0.96691 0.88629 0.96998 1.21239 1.39440 0.94859 1.00539 0.92669 1.25033 0.95940 0.97321 0.96143 1.69965 1.47666 1.06934 1.28857 0.86599 0.79693 0.78421 0.83331 1.20633 1.21217 1.19842 0.93892 0.90490 0.91106 0.93873 0.89505 0.89579 0.93424 0.87240 0.86525 0.72989 0.88992 0.93477 0.90447 0.88264 0.83421 0.83786 0.91670 0.91803 0.93288 0.93047 0.96721 0.96778 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.62 37.16 0.28 -1.28 16 2 C 0.15 1.57 3.65 -67.45 -0.25 1.33 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.05 0.42 4.91 -3.70 -0.02 0.40 16 5 N -0.54 -4.57 4.63 -234.32 -1.08 -5.65 16 6 C 0.07 0.53 4.25 -3.82 -0.02 0.51 16 7 C -0.11 -0.73 5.74 -27.88 -0.16 -0.89 16 8 C 0.48 3.93 8.33 36.01 0.30 4.23 16 9 O -0.52 -5.96 16.74 -18.75 -0.31 -6.27 16 10 O -0.52 -3.23 13.42 -39.26 -0.53 -3.76 16 11 C 0.03 0.28 5.46 -3.71 -0.02 0.26 16 12 C 0.11 1.02 5.92 -3.60 -0.02 1.00 16 13 N -0.61 -7.07 3.01 -164.88 -0.50 -7.57 16 14 C 0.53 7.42 6.86 -10.99 -0.08 7.35 16 15 O -0.53 -8.65 11.77 5.55 0.07 -8.58 16 16 C 0.07 0.98 2.35 -68.87 -0.16 0.82 16 17 H 0.10 1.21 7.10 -51.92 -0.37 0.84 16 18 N -0.83 -11.45 8.94 -5.66 -0.05 -11.50 16 19 C -0.15 -2.29 4.47 -26.74 -0.12 -2.41 16 20 C -0.11 -2.00 4.92 -26.73 -0.13 -2.13 16 21 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 22 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 23 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 24 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 25 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 26 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.02 6.79 -51.93 -0.35 0.67 16 32 H 0.07 0.97 6.77 -51.93 -0.35 0.62 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.68 7.99 -51.93 -0.41 0.26 16 35 H 0.09 0.69 7.93 -51.93 -0.41 0.28 16 36 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.11 0.63 6.40 -51.93 -0.33 0.30 16 38 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.41 0.99 9.10 45.56 0.41 1.40 16 40 H 0.09 0.66 6.16 -51.93 -0.32 0.34 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.98 4.68 -51.93 -0.24 0.73 16 44 H 0.35 4.55 7.55 -39.29 -0.30 4.26 16 45 H 0.35 4.99 8.58 -39.29 -0.34 4.65 16 46 H 0.06 0.97 6.57 -51.93 -0.34 0.63 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.05 0.88 6.87 -51.93 -0.36 0.53 16 49 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -33.86 404.72 -9.43 -43.29 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.90 Total: 6.93 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.94 Total: -3.48 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.90 Total: -50.40 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.78 Total: -18.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.86 -9.43 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594513696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.417 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds