Wall clock time and date at job start Wed Apr 1 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.78539 * 2 1 4 4 C 1.53698 * 109.70205 * 120.73893 * 2 1 3 5 5 N 1.46900 * 109.25708 * 173.68714 * 4 2 1 6 6 C 1.46900 * 110.99458 * 172.60569 * 5 4 2 7 7 C 1.52998 * 109.47439 * 58.25858 * 6 5 4 8 8 C 1.50700 * 109.47369 * 179.97438 * 7 6 5 9 9 O 1.20832 * 119.99510 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00194 * 179.97438 * 8 7 6 11 11 C 1.46894 * 111.26834 * 296.75735 * 5 4 2 12 12 C 1.53238 * 109.34406 * 63.10450 * 11 5 4 13 13 N 1.47082 * 109.62714 * 239.51283 * 2 1 3 14 14 C 1.34771 * 120.88348 * 9.09862 * 13 2 1 15 15 O 1.21283 * 120.00108 * 354.99688 * 14 13 2 16 16 C 1.50692 * 120.00043 * 174.98614 * 14 13 2 17 17 H 1.09001 * 109.47468 * 40.00596 * 16 14 13 18 18 N 1.46900 * 109.47263 * 160.00242 * 16 14 13 19 19 C 1.53005 * 109.47682 * 280.00631 * 16 14 13 20 20 C 1.53005 * 109.47352 * 174.99931 * 19 16 14 21 21 C 1.53002 * 109.46715 * 179.97438 * 20 19 16 22 22 C 1.50698 * 109.46577 * 179.97438 * 21 20 19 23 23 H 1.08004 * 120.00317 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31523 * 119.99966 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00432 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47311 * 90.00040 * 26 24 22 28 28 H 1.48500 * 109.47614 * 210.00097 * 26 24 22 29 29 H 1.48496 * 109.47199 * 330.00104 * 26 24 22 30 30 H 1.08997 * 109.46783 * 174.14590 * 1 2 3 31 31 H 1.09002 * 109.46801 * 294.14448 * 1 2 3 32 32 H 1.08997 * 109.46559 * 54.14567 * 1 2 3 33 33 H 1.09006 * 109.64954 * 53.68141 * 4 2 1 34 34 H 1.09007 * 109.44065 * 293.56650 * 4 2 1 35 35 H 1.09006 * 109.46437 * 178.25957 * 6 5 4 36 36 H 1.09000 * 109.47250 * 298.25042 * 6 5 4 37 37 H 1.08998 * 109.46781 * 299.99507 * 7 6 5 38 38 H 1.09005 * 109.47109 * 59.99335 * 7 6 5 39 39 H 0.96703 * 117.00362 * 180.02562 * 10 8 7 40 40 H 1.09006 * 109.49031 * 303.14101 * 11 5 4 41 41 H 1.08996 * 109.49113 * 183.06906 * 11 5 4 42 42 H 1.08998 * 109.62869 * 186.46096 * 12 11 5 43 43 H 1.08997 * 109.78502 * 65.96977 * 12 11 5 44 44 H 1.00897 * 111.00285 * 296.04850 * 18 16 14 45 45 H 1.00907 * 110.99635 * 60.00817 * 18 16 14 46 46 H 1.09002 * 109.46989 * 295.00132 * 19 16 14 47 47 H 1.08996 * 109.46859 * 54.99553 * 19 16 14 48 48 H 1.08993 * 109.46854 * 299.99601 * 20 19 16 49 49 H 1.09000 * 109.46736 * 60.00086 * 20 19 16 50 50 H 1.09002 * 109.47356 * 300.00035 * 21 20 19 51 51 H 1.08998 * 109.46918 * 60.00336 * 21 20 19 52 52 H 0.96995 * 120.00409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0482 -0.7396 1.2437 5 7 3.5092 -0.8663 1.1584 6 6 4.0641 -1.4098 2.4053 7 6 3.4339 -2.7742 2.6918 8 6 4.0036 -3.3321 3.9706 9 8 4.8287 -2.7026 4.5895 10 8 3.5938 -4.5277 4.4226 11 6 3.9067 -1.6840 0.0047 12 6 3.4639 -0.9887 -1.2870 13 7 2.0241 -0.7029 -1.1938 14 6 1.1807 -1.0704 -2.1787 15 8 -0.0135 -0.9043 -2.0479 16 6 1.7216 -1.6876 -3.4426 17 1 2.5301 -2.3752 -3.1941 18 7 0.6487 -2.4208 -4.1276 19 6 2.2535 -0.5858 -4.3613 20 6 2.9146 -1.2189 -5.5873 21 6 3.4458 -0.1169 -6.5062 22 6 4.0975 -0.7405 -7.7135 23 1 4.1292 -1.8153 -7.8154 24 6 4.6524 0.0610 -8.6885 25 7 4.6134 1.3698 -8.5647 26 14 5.4595 -0.7118 -10.1853 27 1 4.4473 -0.8893 -11.2573 28 1 6.5475 0.1732 -10.6735 29 1 6.0256 -2.0339 -9.8152 30 1 -0.3633 -1.0223 -0.1048 31 1 -0.3633 0.4204 0.9378 32 1 -0.3632 0.6019 -0.8329 33 1 1.5994 -1.7317 1.2937 34 1 1.7836 -0.1752 2.1379 35 1 5.1436 -1.5222 2.3038 36 1 3.8455 -0.7286 3.2276 37 1 2.3545 -2.6617 2.7932 38 1 3.6526 -3.4554 1.8694 39 1 3.9874 -4.8438 5.2474 40 1 3.4320 -2.6630 0.0720 41 1 4.9900 -1.8043 0.0001 42 1 3.6530 -1.6426 -2.1383 43 1 4.0148 -0.0565 -1.4118 44 1 0.3246 -3.1947 -3.5671 45 1 -0.1133 -1.8048 -4.3688 46 1 1.4282 0.0503 -4.6813 47 1 2.9867 0.0142 -3.8223 48 1 3.7399 -1.8548 -5.2673 49 1 2.1813 -1.8188 -6.1263 50 1 2.6202 0.5188 -6.8262 51 1 4.1790 0.4833 -5.9675 52 1 5.0040 1.9337 -9.2504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594513697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:28 Heat of formation + Delta-G solvation = -119.589137 kcal Electronic energy + Delta-G solvation = -30762.924215 eV Core-core repulsion = 26569.350271 eV Total energy + Delta-G solvation = -4193.573944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08350 -40.64033 -38.75009 -36.71465 -36.00450 -35.40481 -33.52084 -32.74873 -31.58215 -31.33581 -28.65217 -27.79356 -26.74227 -25.17197 -24.24294 -22.95724 -22.51947 -21.60564 -20.52861 -20.00678 -18.85888 -18.66557 -17.27281 -17.10554 -16.86223 -16.38878 -16.35562 -15.93146 -15.70764 -15.11273 -15.02246 -14.87268 -14.56555 -14.42499 -14.08545 -13.85395 -13.65073 -13.20898 -12.95865 -12.88723 -12.66495 -12.58281 -12.39480 -12.23598 -12.06055 -11.79407 -11.70363 -11.62794 -11.42857 -11.27925 -11.24866 -11.11870 -11.06673 -10.73042 -10.53331 -10.40661 -9.71173 -9.54911 -9.20868 -9.08248 -9.03553 -8.63913 -8.43254 -8.28760 -5.94591 -3.96243 1.65838 2.46209 2.53558 2.77413 3.35426 3.38375 3.41493 3.44837 4.16489 4.29359 4.30918 4.49682 4.51809 4.54779 4.64375 4.67756 4.74459 4.81634 4.89222 5.01783 5.03746 5.13415 5.22039 5.27380 5.36903 5.39196 5.40404 5.41311 5.51194 5.58698 5.67766 5.93041 5.95915 5.98373 6.09315 6.16751 6.40136 6.44236 6.45318 6.55453 6.81761 7.01267 7.09045 7.24240 7.31045 7.34405 7.50494 7.75422 7.90975 8.06923 8.09321 8.50095 9.11428 9.67451 11.16774 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.002158 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.126044 B =12971.422886 C =13948.672356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.145 3.855 3 H 0.080 0.920 4 C 0.039 3.961 5 N -0.529 5.529 6 C 0.068 3.932 7 C -0.157 4.157 8 C 0.484 3.516 9 O -0.513 6.513 10 O -0.519 6.519 11 C 0.034 3.966 12 C 0.107 3.893 13 N -0.610 5.610 14 C 0.486 3.514 15 O -0.542 6.542 16 C 0.074 3.926 17 H 0.098 0.902 18 N -0.811 5.811 19 C -0.103 4.103 20 C -0.099 4.099 21 C 0.020 3.980 22 C -0.516 4.516 23 H 0.055 0.945 24 C 0.054 3.946 25 N -0.897 5.897 26 Si 0.891 3.109 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.411 0.589 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.336 0.664 45 H 0.350 0.650 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.062 0.938 50 H 0.013 0.987 51 H 0.012 0.988 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -8.709 27.229 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.042 3.958 3 H 0.098 0.902 4 C -0.089 4.089 5 N -0.251 5.251 6 C -0.060 4.060 7 C -0.197 4.197 8 C 0.326 3.674 9 O -0.401 6.401 10 O -0.331 6.331 11 C -0.094 4.094 12 C -0.016 4.016 13 N -0.344 5.344 14 C 0.273 3.727 15 O -0.420 6.420 16 C -0.041 4.041 17 H 0.116 0.884 18 N -0.340 5.340 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.017 4.017 22 C -0.554 4.554 23 H 0.073 0.927 24 C -0.146 4.146 25 N -0.537 5.537 26 Si 0.719 3.281 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.199 1.199 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.270 0.730 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.148 0.852 45 H 0.164 0.836 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.032 0.968 51 H 0.030 0.970 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.130 -7.819 26.339 27.783 hybrid contribution -0.059 -1.080 0.770 1.328 sum -4.189 -8.899 27.108 28.838 Atomic orbital electron populations 1.22145 0.92245 1.03870 1.00920 1.21465 0.95477 0.95760 0.83130 0.90229 1.22774 0.87172 0.99939 0.99052 1.62210 1.10749 1.49714 1.02462 1.22139 1.00245 0.91251 0.92368 1.22222 1.03540 1.00451 0.93456 1.23361 0.78981 0.78398 0.86708 1.90754 1.31771 1.59434 1.58169 1.84550 1.66964 1.36420 1.45174 1.22623 1.01658 0.94709 0.90444 1.21968 0.80464 1.01810 0.97392 1.48337 1.08152 1.58216 1.19719 1.22470 0.86846 0.77857 0.85505 1.90716 1.15748 1.55385 1.80187 1.21842 0.95699 0.97197 0.89371 0.88415 1.59056 1.15350 1.13342 1.46226 1.21641 1.00169 0.95428 0.96849 1.21533 0.98546 0.99421 0.94166 1.19116 0.95762 0.93334 0.93528 1.21272 1.36247 0.92962 1.04946 0.92689 1.25037 0.96413 0.94838 0.98335 1.69969 1.45927 1.03141 1.34633 0.86617 0.79105 0.79131 0.83270 1.20729 1.21339 1.19911 0.91370 0.93901 0.90483 0.93904 0.89475 0.89163 0.89274 0.87472 0.87482 0.72962 0.93979 0.88816 0.88356 0.89816 0.85182 0.83582 0.91972 0.91898 0.93768 0.91884 0.96820 0.96950 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 7.62 37.16 0.28 -1.13 16 2 C 0.15 1.41 3.67 -67.25 -0.25 1.16 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.04 0.29 4.26 -3.46 -0.01 0.28 16 5 N -0.53 -3.86 4.83 -234.02 -1.13 -4.99 16 6 C 0.07 0.43 4.64 -3.83 -0.02 0.42 16 7 C -0.16 -0.85 5.12 -27.88 -0.14 -0.99 16 8 C 0.48 3.32 8.33 36.01 0.30 3.62 16 9 O -0.51 -5.09 16.74 -18.76 -0.31 -5.40 16 10 O -0.52 -2.71 13.42 -39.24 -0.53 -3.24 16 11 C 0.03 0.24 5.16 -3.70 -0.02 0.22 16 12 C 0.11 0.95 5.90 -3.60 -0.02 0.93 16 13 N -0.61 -6.48 3.00 -164.66 -0.49 -6.97 16 14 C 0.49 6.22 6.84 -10.99 -0.08 6.15 16 15 O -0.54 -8.07 11.76 5.55 0.07 -8.00 16 16 C 0.07 0.97 2.33 -68.87 -0.16 0.81 16 17 H 0.10 1.14 6.31 -51.93 -0.33 0.81 16 18 N -0.81 -10.67 8.44 -5.65 -0.05 -10.72 16 19 C -0.10 -1.65 4.78 -26.73 -0.13 -1.78 16 20 C -0.10 -1.97 5.04 -26.73 -0.13 -2.11 16 21 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 22 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 23 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 24 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 25 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 26 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.07 0.81 6.79 -51.93 -0.35 0.46 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 1.00 6.77 -51.93 -0.35 0.65 16 33 H 0.04 0.32 6.70 -51.93 -0.35 -0.03 16 34 H 0.09 0.56 8.11 -51.93 -0.42 0.13 16 35 H 0.09 0.61 8.00 -51.93 -0.42 0.19 16 36 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.11 0.52 6.54 -51.93 -0.34 0.18 16 38 H 0.11 0.52 6.72 -51.93 -0.35 0.17 16 39 H 0.41 0.54 9.10 45.56 0.41 0.95 16 40 H 0.04 0.28 6.83 -51.93 -0.35 -0.07 16 41 H 0.09 0.56 8.04 -51.93 -0.42 0.14 16 42 H 0.10 0.85 5.52 -51.93 -0.29 0.56 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.34 3.81 9.06 -39.29 -0.36 3.46 16 45 H 0.35 4.82 8.58 -39.29 -0.34 4.48 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.06 0.98 7.59 -51.93 -0.39 0.58 16 48 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.06 1.31 7.75 -51.93 -0.40 0.90 16 50 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -34.41 405.14 -9.51 -43.93 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.96 Total: 4.47 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.93 Total: -5.54 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.94 Total: -49.08 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.78 Total: -16.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.41 -9.51 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594513697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.664 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds