Wall clock time and date at job start Wed Apr 1 2020 01:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.78539 * 2 1 4 4 C 1.53698 * 109.70205 * 120.73893 * 2 1 3 5 5 N 1.46900 * 109.25708 * 173.68714 * 4 2 1 6 6 C 1.46900 * 110.99458 * 172.60569 * 5 4 2 7 7 C 1.52998 * 109.47439 * 58.25858 * 6 5 4 8 8 C 1.50700 * 109.47369 * 179.97438 * 7 6 5 9 9 O 1.20832 * 119.99510 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00194 * 179.97438 * 8 7 6 11 11 C 1.46894 * 111.26834 * 296.75735 * 5 4 2 12 12 C 1.53238 * 109.34406 * 63.10450 * 11 5 4 13 13 N 1.47082 * 109.62714 * 239.51283 * 2 1 3 14 14 C 1.34771 * 120.88348 * 9.09862 * 13 2 1 15 15 O 1.21283 * 120.00108 * 354.99688 * 14 13 2 16 16 C 1.50692 * 120.00043 * 174.98614 * 14 13 2 17 17 H 1.09001 * 109.47468 * 40.00596 * 16 14 13 18 18 N 1.46900 * 109.47263 * 160.00242 * 16 14 13 19 19 C 1.53005 * 109.47682 * 280.00631 * 16 14 13 20 20 C 1.53005 * 109.47352 * 174.99931 * 19 16 14 21 21 C 1.53002 * 109.46715 * 179.97438 * 20 19 16 22 22 C 1.50698 * 109.46577 * 179.97438 * 21 20 19 23 23 H 1.08004 * 120.00317 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99949 * 179.97438 * 22 21 20 25 25 N 1.31523 * 119.99966 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00432 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47311 * 90.00040 * 26 24 22 28 28 H 1.48500 * 109.47614 * 210.00097 * 26 24 22 29 29 H 1.48496 * 109.47199 * 330.00104 * 26 24 22 30 30 H 1.08997 * 109.46783 * 174.14590 * 1 2 3 31 31 H 1.09002 * 109.46801 * 294.14448 * 1 2 3 32 32 H 1.08997 * 109.46559 * 54.14567 * 1 2 3 33 33 H 1.09006 * 109.64954 * 53.68141 * 4 2 1 34 34 H 1.09007 * 109.44065 * 293.56650 * 4 2 1 35 35 H 1.09006 * 109.46437 * 178.25957 * 6 5 4 36 36 H 1.09000 * 109.47250 * 298.25042 * 6 5 4 37 37 H 1.08998 * 109.46781 * 299.99507 * 7 6 5 38 38 H 1.09005 * 109.47109 * 59.99335 * 7 6 5 39 39 H 0.96703 * 117.00362 * 180.02562 * 10 8 7 40 40 H 1.09006 * 109.49031 * 303.14101 * 11 5 4 41 41 H 1.08996 * 109.49113 * 183.06906 * 11 5 4 42 42 H 1.08998 * 109.62869 * 186.46096 * 12 11 5 43 43 H 1.08997 * 109.78502 * 65.96977 * 12 11 5 44 44 H 1.00897 * 111.00285 * 296.04850 * 18 16 14 45 45 H 1.00907 * 110.99635 * 60.00817 * 18 16 14 46 46 H 1.09002 * 109.46989 * 295.00132 * 19 16 14 47 47 H 1.08996 * 109.46859 * 54.99553 * 19 16 14 48 48 H 1.08993 * 109.46854 * 299.99601 * 20 19 16 49 49 H 1.09000 * 109.46736 * 60.00086 * 20 19 16 50 50 H 1.09002 * 109.47356 * 300.00035 * 21 20 19 51 51 H 1.08998 * 109.46918 * 60.00336 * 21 20 19 52 52 H 0.96995 * 120.00409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0482 -0.7396 1.2437 5 7 3.5092 -0.8663 1.1584 6 6 4.0641 -1.4098 2.4053 7 6 3.4339 -2.7742 2.6918 8 6 4.0036 -3.3321 3.9706 9 8 4.8287 -2.7026 4.5895 10 8 3.5938 -4.5277 4.4226 11 6 3.9067 -1.6840 0.0047 12 6 3.4639 -0.9887 -1.2870 13 7 2.0241 -0.7029 -1.1938 14 6 1.1807 -1.0704 -2.1787 15 8 -0.0135 -0.9043 -2.0479 16 6 1.7216 -1.6876 -3.4426 17 1 2.5301 -2.3752 -3.1941 18 7 0.6487 -2.4208 -4.1276 19 6 2.2535 -0.5858 -4.3613 20 6 2.9146 -1.2189 -5.5873 21 6 3.4458 -0.1169 -6.5062 22 6 4.0975 -0.7405 -7.7135 23 1 4.1292 -1.8153 -7.8154 24 6 4.6524 0.0610 -8.6885 25 7 4.6134 1.3698 -8.5647 26 14 5.4595 -0.7118 -10.1853 27 1 4.4473 -0.8893 -11.2573 28 1 6.5475 0.1732 -10.6735 29 1 6.0256 -2.0339 -9.8152 30 1 -0.3633 -1.0223 -0.1048 31 1 -0.3633 0.4204 0.9378 32 1 -0.3632 0.6019 -0.8329 33 1 1.5994 -1.7317 1.2937 34 1 1.7836 -0.1752 2.1379 35 1 5.1436 -1.5222 2.3038 36 1 3.8455 -0.7286 3.2276 37 1 2.3545 -2.6617 2.7932 38 1 3.6526 -3.4554 1.8694 39 1 3.9874 -4.8438 5.2474 40 1 3.4320 -2.6630 0.0720 41 1 4.9900 -1.8043 0.0001 42 1 3.6530 -1.6426 -2.1383 43 1 4.0148 -0.0565 -1.4118 44 1 0.3246 -3.1947 -3.5671 45 1 -0.1133 -1.8048 -4.3688 46 1 1.4282 0.0503 -4.6813 47 1 2.9867 0.0142 -3.8223 48 1 3.7399 -1.8548 -5.2673 49 1 2.1813 -1.8188 -6.1263 50 1 2.6202 0.5188 -6.8262 51 1 4.1790 0.4833 -5.9675 52 1 5.0040 1.9337 -9.2504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594513697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:27 Heat of formation + Delta-G solvation = -146.080440 kcal Electronic energy + Delta-G solvation = -30764.072964 eV Core-core repulsion = 26569.350271 eV Total energy + Delta-G solvation = -4194.722693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.85411 -41.27564 -39.48516 -37.33224 -37.17941 -36.19519 -35.32865 -33.70208 -33.02389 -32.14418 -29.65810 -29.12426 -27.40102 -26.69073 -24.88401 -24.38202 -23.20203 -22.51350 -21.70204 -21.16526 -19.75917 -19.16658 -18.42440 -18.02578 -17.76664 -17.55482 -17.09692 -17.07894 -16.46688 -16.32795 -16.04196 -15.81075 -15.61289 -15.30276 -15.23708 -14.60223 -14.50783 -14.30572 -14.17529 -13.87488 -13.67201 -13.57503 -13.37563 -13.19455 -13.04994 -13.00320 -12.73362 -12.58321 -12.49294 -12.36810 -12.34064 -12.27997 -12.12872 -11.95675 -11.77190 -11.67973 -11.38602 -11.24553 -11.08388 -10.57940 -10.49150 -9.79401 -9.51330 -9.30108 -8.15251 -6.25591 1.16031 1.42610 1.44004 1.51330 1.55155 1.92706 2.08346 2.44767 2.83045 3.17758 3.41817 3.60873 3.69713 3.79439 3.87390 3.93937 3.95773 4.08496 4.13890 4.21961 4.25045 4.29642 4.37125 4.50714 4.54201 4.62006 4.68835 4.69918 4.73167 4.77490 4.85446 4.93715 4.97091 5.05679 5.14824 5.16570 5.28183 5.31198 5.36655 5.58333 5.59423 5.62632 5.86381 5.90790 5.95667 5.95941 6.07438 6.32226 6.38701 6.50185 6.92416 6.95028 7.12242 7.43354 8.96445 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.002158 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.126044 B =12971.422886 C =13948.672356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.141 3.859 3 H 0.074 0.926 4 C 0.047 3.953 5 N -0.537 5.537 6 C 0.074 3.926 7 C -0.151 4.151 8 C 0.489 3.511 9 O -0.549 6.549 10 O -0.518 6.518 11 C 0.038 3.962 12 C 0.101 3.899 13 N -0.605 5.605 14 C 0.485 3.515 15 O -0.566 6.566 16 C 0.084 3.916 17 H 0.119 0.881 18 N -0.818 5.818 19 C -0.092 4.092 20 C -0.082 4.082 21 C 0.022 3.978 22 C -0.537 4.537 23 H 0.061 0.939 24 C -0.004 4.004 25 N -0.935 5.935 26 Si 0.963 3.037 27 H -0.275 1.275 28 H -0.283 1.283 29 H -0.261 1.261 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.427 0.573 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.348 0.652 45 H 0.345 0.655 46 H 0.042 0.958 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.055 0.945 50 H -0.018 1.018 51 H -0.008 1.008 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 -10.678 28.184 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.038 3.962 3 H 0.092 0.908 4 C -0.081 4.081 5 N -0.260 5.260 6 C -0.054 4.054 7 C -0.190 4.190 8 C 0.333 3.667 9 O -0.440 6.440 10 O -0.332 6.332 11 C -0.090 4.090 12 C -0.021 4.021 13 N -0.339 5.339 14 C 0.272 3.728 15 O -0.446 6.446 16 C -0.031 4.031 17 H 0.137 0.863 18 N -0.347 5.347 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.015 4.015 22 C -0.575 4.575 23 H 0.079 0.921 24 C -0.202 4.202 25 N -0.576 5.576 26 Si 0.788 3.212 27 H -0.201 1.201 28 H -0.209 1.209 29 H -0.185 1.185 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.289 0.711 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.162 0.838 45 H 0.158 0.842 46 H 0.061 0.939 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.000 1.000 51 H 0.010 0.990 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.444 -9.826 27.331 29.247 hybrid contribution -0.279 -0.438 0.511 0.728 sum -3.723 -10.263 27.842 29.906 Atomic orbital electron populations 1.21965 0.92863 1.02521 1.00785 1.21549 0.94972 0.95872 0.83825 0.90752 1.22677 0.87316 1.00030 0.98077 1.62177 1.10572 1.50266 1.02945 1.22028 1.00001 0.91719 0.91626 1.22186 1.03821 0.99931 0.93095 1.23570 0.78153 0.78334 0.86691 1.90748 1.33483 1.60448 1.59347 1.84518 1.66825 1.35626 1.46227 1.22613 1.02558 0.94663 0.89206 1.22123 0.79185 1.01928 0.98900 1.48390 1.08725 1.57293 1.19450 1.22321 0.86676 0.77969 0.85826 1.90723 1.16775 1.56419 1.80707 1.21665 0.96264 0.96438 0.88754 0.86304 1.59055 1.15271 1.13656 1.46691 1.21417 0.99419 0.96099 0.96056 1.21269 0.98746 0.97504 0.94427 1.19047 0.94090 0.94329 0.94028 1.21728 1.36356 0.93425 1.05982 0.92107 1.26000 0.97061 0.95316 1.01778 1.70108 1.46911 1.04706 1.35890 0.85470 0.78072 0.78634 0.79013 1.20099 1.20869 1.18471 0.92674 0.91767 0.93383 0.93376 0.88124 0.89533 0.89741 0.86497 0.86406 0.71081 0.93005 0.87438 0.87902 0.90409 0.83835 0.84157 0.93877 0.91345 0.92442 0.92578 0.99981 0.98979 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 7.62 71.98 0.55 -1.99 16 2 C 0.14 2.58 3.67 45.12 0.17 2.74 16 3 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.05 0.60 4.26 86.54 0.37 0.97 16 5 N -0.54 -6.66 4.83 -894.30 -4.32 -10.98 16 6 C 0.07 0.80 4.64 86.30 0.40 1.20 16 7 C -0.15 -1.26 5.12 29.85 0.15 -1.11 16 8 C 0.49 5.84 8.33 71.24 0.59 6.43 16 9 O -0.55 -10.31 16.74 21.94 0.37 -9.94 16 10 O -0.52 -4.32 13.42 -51.36 -0.69 -5.01 16 11 C 0.04 0.44 5.16 86.38 0.45 0.88 16 12 C 0.10 1.62 5.90 86.35 0.51 2.13 16 13 N -0.61 -12.16 3.00 -793.24 -2.38 -14.54 16 14 C 0.48 12.09 6.84 87.66 0.60 12.69 16 15 O -0.57 -16.84 11.76 -3.04 -0.04 -16.87 16 16 C 0.08 2.10 2.33 44.17 0.10 2.21 16 17 H 0.12 2.48 6.31 -2.39 -0.02 2.47 16 18 N -0.82 -20.80 8.44 -171.80 -1.45 -22.25 16 19 C -0.09 -2.95 4.78 30.60 0.15 -2.80 16 20 C -0.08 -3.25 5.04 30.60 0.15 -3.09 16 21 C 0.02 1.17 4.97 29.85 0.15 1.31 16 22 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 23 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 24 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 25 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 26 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 29 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 30 H 0.05 1.28 6.79 -2.39 -0.02 1.26 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.26 6.77 -2.39 -0.02 1.25 16 33 H 0.05 0.58 6.70 -2.38 -0.02 0.57 16 34 H 0.10 1.03 8.11 -2.38 -0.02 1.01 16 35 H 0.09 1.02 8.00 -2.38 -0.02 1.00 16 36 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.12 0.79 6.54 -2.39 -0.02 0.77 16 38 H 0.12 0.77 6.72 -2.38 -0.02 0.75 16 39 H 0.43 0.32 9.10 -74.05 -0.67 -0.35 16 40 H 0.05 0.52 6.83 -2.38 -0.02 0.51 16 41 H 0.11 0.98 8.04 -2.39 -0.02 0.96 16 42 H 0.10 1.55 5.52 -2.39 -0.01 1.53 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.35 7.42 9.06 -89.70 -0.81 6.61 16 45 H 0.34 9.48 8.58 -89.69 -0.77 8.71 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 2.12 7.59 -2.39 -0.02 2.10 16 48 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 50 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 51 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 52 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -75.06 405.14 -2.47 -77.53 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -1.30 Total: 21.47 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.03 Total: -8.67 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -7.87 Total: -105.08 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.36 Total: -31.82 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.06 -2.47 -77.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594513697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.551 kcal (2) G-P(sol) polarization free energy of solvation -75.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds