Wall clock time and date at job start Wed Apr 1 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.60736 * 2 1 4 4 C 1.53372 * 109.61198 * 120.34419 * 2 1 3 5 5 N 1.46962 * 108.63667 * 70.31787 * 4 2 1 6 6 C 1.34777 * 120.59462 * 235.20643 * 5 4 2 7 7 O 1.21582 * 119.99957 * 5.01341 * 6 5 4 8 8 N 1.34774 * 120.00164 * 184.73920 * 6 5 4 9 9 C 1.46501 * 120.00491 * 175.03083 * 8 6 5 10 10 C 1.52992 * 109.47481 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47426 * 300.00427 * 10 9 8 12 12 C 1.52999 * 109.47333 * 60.00177 * 10 9 8 13 13 C 1.53003 * 109.47502 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.47360 * 180.02562 * 13 10 9 15 15 O 1.20825 * 120.00190 * 359.97438 * 14 13 10 16 16 O 1.34233 * 119.99856 * 180.02562 * 14 13 10 17 17 C 1.46964 * 118.81129 * 55.47753 * 5 4 2 18 18 C 1.53812 * 108.40032 * 304.48504 * 17 5 4 19 19 H 1.09003 * 109.88293 * 289.76143 * 18 17 5 20 20 C 1.53002 * 109.53423 * 169.30197 * 18 17 5 21 21 N 1.46962 * 108.57933 * 49.63630 * 18 17 5 22 22 C 1.36933 * 120.59558 * 124.67140 * 21 18 17 23 23 H 1.08003 * 119.99701 * 323.48400 * 22 21 18 24 24 C 1.38810 * 120.00025 * 143.48522 * 22 21 18 25 25 N 1.31615 * 120.00129 * 359.24177 * 24 22 21 26 26 Si 1.86803 * 120.00049 * 179.23719 * 24 22 21 27 27 H 1.48506 * 109.47192 * 59.99841 * 26 24 22 28 28 H 1.48493 * 109.47430 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47016 * 300.00061 * 26 24 22 30 30 H 1.08997 * 109.46797 * 299.65502 * 1 2 3 31 31 H 1.08990 * 109.47473 * 59.65832 * 1 2 3 32 32 H 1.09005 * 109.46907 * 179.66289 * 1 2 3 33 33 H 1.09008 * 109.60885 * 310.57708 * 4 2 1 34 34 H 1.08995 * 109.74902 * 190.14802 * 4 2 1 35 35 H 0.97005 * 119.99623 * 355.03754 * 8 6 5 36 36 H 1.08994 * 109.46940 * 300.00387 * 9 8 6 37 37 H 1.09007 * 109.46723 * 60.00126 * 9 8 6 38 38 H 1.08996 * 109.47466 * 59.99479 * 11 10 9 39 39 H 1.08997 * 109.47578 * 180.02562 * 11 10 9 40 40 H 1.09007 * 109.46896 * 299.99980 * 11 10 9 41 41 H 1.09004 * 109.47106 * 59.99692 * 12 10 9 42 42 H 1.08999 * 109.47554 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47223 * 300.00211 * 12 10 9 44 44 H 1.08994 * 109.46766 * 300.00260 * 13 10 9 45 45 H 1.09000 * 109.46545 * 60.00132 * 13 10 9 46 46 H 0.96700 * 116.99756 * 179.97438 * 16 14 13 47 47 H 1.08996 * 109.60954 * 64.26733 * 17 5 4 48 48 H 1.09004 * 109.61087 * 184.77765 * 17 5 4 49 49 H 1.08999 * 109.46800 * 296.34352 * 20 18 17 50 50 H 1.09000 * 109.47039 * 56.33838 * 20 18 17 51 51 H 1.08999 * 109.46846 * 176.34243 * 20 18 17 52 52 H 0.97004 * 120.00115 * 185.00398 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0448 -0.7299 1.2468 5 7 1.7607 -2.1645 1.1021 6 6 1.0607 -2.8238 2.0464 7 8 0.5802 -2.2152 2.9828 8 7 0.8886 -4.1570 1.9498 9 6 0.2226 -4.8899 3.0294 10 6 0.1573 -6.3761 2.6724 11 6 -0.6308 -6.5545 1.3731 12 6 1.5757 -6.9190 2.4869 13 6 -0.5388 -7.1414 3.7997 14 6 -0.6026 -8.6054 3.4482 15 8 -0.1393 -8.9966 2.4032 16 8 -1.1750 -9.4748 4.2958 17 6 2.2586 -2.8686 -0.0879 18 6 1.7391 -2.1375 -1.3375 19 1 0.6642 -2.2895 -1.4358 20 6 2.4498 -2.6790 -2.5795 21 7 2.0232 -0.7029 -1.1927 22 6 2.7344 -0.0330 -2.1522 23 1 3.5502 -0.5246 -2.6614 24 6 2.4068 1.2778 -2.4703 25 7 1.4031 1.8719 -1.8604 26 14 3.3905 2.1988 -3.7640 27 1 3.2973 1.4809 -5.0607 28 1 2.8444 3.5711 -3.9172 29 1 4.8123 2.2766 -3.3423 30 1 -0.3633 0.5085 0.8930 31 1 -0.3634 0.5191 -0.8868 32 1 -0.3633 -1.0277 -0.0060 33 1 1.5384 -0.3441 2.1317 34 1 3.1197 -0.5779 1.3450 35 1 1.2058 -4.6314 1.1654 36 1 0.7844 -4.7633 3.9548 37 1 -0.7878 -4.5029 3.1618 38 1 -0.1354 -6.0092 0.5698 39 1 -0.6778 -7.6133 1.1190 40 1 -1.6414 -6.1677 1.5052 41 1 2.1372 -6.7920 3.4125 42 1 1.5292 -7.9777 2.2321 43 1 2.0713 -6.3738 1.6836 44 1 0.0223 -7.0145 4.7254 45 1 -1.5493 -6.7546 3.9313 46 1 -1.1925 -10.4034 4.0267 47 1 3.3486 -2.8652 -0.0856 48 1 1.8936 -3.8957 -0.0848 49 1 3.5151 -2.4581 -2.5137 50 1 2.3055 -3.7578 -2.6394 51 1 2.0351 -2.2069 -3.4702 52 1 1.1278 2.7612 -2.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604775973.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:26 Heat of formation + Delta-G solvation = -88.422711 kcal Electronic energy + Delta-G solvation = -32046.599899 eV Core-core repulsion = 27854.377433 eV Total energy + Delta-G solvation = -4192.222466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02037 -39.96835 -38.09302 -37.13945 -36.19916 -34.01487 -33.37083 -32.46830 -31.11873 -29.01690 -27.90179 -27.48366 -26.83791 -26.16924 -24.84198 -23.59161 -22.35550 -20.85368 -20.07194 -19.42210 -18.67130 -18.46033 -17.69292 -16.89753 -16.37136 -16.12063 -15.69908 -15.41387 -15.13061 -14.58817 -14.33233 -14.27203 -14.01337 -13.72671 -13.56421 -13.38654 -13.16366 -13.08262 -12.91545 -12.64711 -12.21275 -12.04507 -11.91781 -11.69230 -11.62094 -11.43316 -11.29579 -11.20580 -11.18114 -11.06255 -10.90308 -10.78846 -10.61404 -10.53725 -10.32884 -10.10672 -9.98980 -9.76017 -9.72068 -9.38175 -8.88130 -8.42269 -7.98427 -6.47014 -5.80647 -3.33925 1.83013 2.59295 3.13501 3.36339 3.42433 3.43085 3.65061 4.17425 4.34038 4.43289 4.45607 4.53497 4.93111 5.08527 5.10216 5.15154 5.19893 5.38528 5.49653 5.55173 5.65745 5.67173 5.69467 5.74690 5.79444 5.86636 5.87554 5.98029 6.09584 6.15009 6.19373 6.30106 6.33493 6.35980 6.42527 6.54394 6.70107 6.73666 6.86992 6.93566 7.01085 7.09798 7.14488 7.40074 7.53643 7.71254 7.75786 7.86228 8.38643 8.51576 9.03225 9.22909 9.80157 10.41153 11.26620 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.002520 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.754321 B =11108.436863 C =11714.438598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.179 3.821 3 H 0.111 0.889 4 C 0.109 3.891 5 N -0.612 5.612 6 C 0.704 3.296 7 O -0.601 6.601 8 N -0.750 5.750 9 C 0.152 3.848 10 C -0.064 4.064 11 C -0.156 4.156 12 C -0.156 4.156 13 C -0.104 4.104 14 C 0.481 3.519 15 O -0.504 6.504 16 O -0.520 6.520 17 C 0.101 3.899 18 C 0.156 3.844 19 H 0.030 0.970 20 C -0.135 4.135 21 N -0.581 5.581 22 C -0.253 4.253 23 H 0.066 0.934 24 C 0.013 3.987 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.019 0.981 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.394 0.606 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.410 0.590 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.038 0.962 51 H 0.063 0.937 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 -19.995 9.759 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.072 3.928 3 H 0.128 0.872 4 C -0.015 4.015 5 N -0.347 5.347 6 C 0.406 3.594 7 O -0.481 6.481 8 N -0.410 5.410 9 C 0.027 3.973 10 C -0.064 4.064 11 C -0.213 4.213 12 C -0.213 4.213 13 C -0.142 4.142 14 C 0.324 3.676 15 O -0.392 6.392 16 O -0.332 6.332 17 C -0.025 4.025 18 C 0.048 3.952 19 H 0.048 0.952 20 C -0.193 4.193 21 N -0.304 5.304 22 C -0.383 4.383 23 H 0.083 0.917 24 C -0.186 4.186 25 N -0.542 5.542 26 Si 0.729 3.271 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.268 0.732 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.082 0.918 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.062 -19.006 10.289 21.828 hybrid contribution 0.513 -0.335 -1.303 1.440 sum -2.549 -19.342 8.986 21.479 Atomic orbital electron populations 1.21934 0.98237 0.98326 1.00753 1.20821 0.92314 0.97052 0.82594 0.87181 1.22415 0.99484 0.78148 1.01465 1.47190 1.56198 1.10730 1.20620 1.15846 0.79493 0.81242 0.82854 1.90855 1.54812 1.67027 1.35359 1.45247 1.65430 1.06678 1.23612 1.21049 0.97956 0.88399 0.89895 1.20611 0.96870 0.93853 0.95086 1.22137 0.99385 1.03904 0.95916 1.22133 0.94091 1.03106 1.01938 1.21371 1.04724 0.87021 1.01074 1.23449 0.73457 0.89683 0.81053 1.90637 1.43748 1.79872 1.24980 1.84550 1.74169 1.23394 1.51061 1.22371 0.98907 0.94168 0.87033 1.20850 0.96302 0.86818 0.91220 0.95192 1.21758 1.01180 0.97762 0.98569 1.44035 1.63122 1.02814 1.20408 1.19048 1.09337 0.95162 1.14744 0.91653 1.25317 0.96758 0.98476 0.98082 1.69861 1.28189 1.14953 1.41246 0.86437 0.79574 0.78969 0.82116 1.20997 1.21702 1.20997 0.95385 0.91028 0.96185 0.90202 0.92773 0.76757 0.91760 0.91538 0.92287 0.90046 0.92684 0.92784 0.90035 0.92348 0.87186 0.87117 0.73163 0.91805 0.92389 0.92378 0.94293 0.91819 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.93 37.16 0.33 -2.76 16 2 C 0.18 4.14 2.32 -67.48 -0.16 3.99 16 3 H 0.11 2.88 6.10 -51.93 -0.32 2.56 16 4 C 0.11 2.24 5.97 -3.60 -0.02 2.22 16 5 N -0.61 -11.33 2.60 -177.94 -0.46 -11.79 16 6 C 0.70 12.79 8.29 -86.92 -0.72 12.06 16 7 O -0.60 -12.89 15.76 5.29 0.08 -12.81 16 8 N -0.75 -10.22 4.87 -65.23 -0.32 -10.53 16 9 C 0.15 1.69 4.57 -4.05 -0.02 1.67 16 10 C -0.06 -0.55 0.53 -154.51 -0.08 -0.63 16 11 C -0.16 -1.47 8.00 37.16 0.30 -1.17 16 12 C -0.16 -1.38 8.00 37.16 0.30 -1.09 16 13 C -0.10 -0.68 4.88 -27.88 -0.14 -0.81 16 14 C 0.48 3.57 7.74 36.00 0.28 3.84 16 15 O -0.50 -4.99 12.11 -18.75 -0.23 -5.22 16 16 O -0.52 -2.88 13.42 -39.26 -0.53 -3.41 16 17 C 0.10 1.67 5.90 -3.37 -0.02 1.65 16 18 C 0.16 3.04 3.24 -67.26 -0.22 2.82 16 19 H 0.03 0.64 7.38 -51.93 -0.38 0.25 16 20 C -0.13 -2.33 8.07 37.16 0.30 -2.03 16 21 N -0.58 -13.53 2.67 -156.76 -0.42 -13.95 16 22 C -0.25 -6.42 8.48 -15.06 -0.13 -6.55 16 23 H 0.07 1.62 6.30 -52.48 -0.33 1.29 16 24 C 0.01 0.33 5.23 -17.43 -0.09 0.24 16 25 N -0.90 -24.54 9.68 55.49 0.54 -24.00 16 26 Si 0.90 20.84 29.56 -169.99 -5.02 15.82 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.83 7.07 -51.93 -0.37 1.46 16 32 H 0.02 0.44 7.00 -51.93 -0.36 0.08 16 33 H 0.08 1.69 6.96 -51.92 -0.36 1.32 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.39 4.79 3.63 -40.82 -0.15 4.64 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.06 0.59 6.86 -51.93 -0.36 0.23 16 39 H 0.08 0.82 5.52 -51.93 -0.29 0.53 16 40 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.79 5.52 -51.93 -0.29 0.50 16 43 H 0.06 0.54 6.86 -51.93 -0.36 0.19 16 44 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.41 0.69 9.10 45.56 0.41 1.11 16 47 H 0.06 1.06 8.12 -51.93 -0.42 0.63 16 48 H 0.06 0.78 5.60 -51.93 -0.29 0.49 16 49 H 0.06 1.02 7.06 -51.93 -0.37 0.66 16 50 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.06 1.20 7.90 -51.93 -0.41 0.79 16 52 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -31.86 390.75 -8.13 -39.99 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.57 Total: 6.56 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -0.09 Total: 13.46 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.66 Total: -60.28 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.67 Total: -21.44 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.86 -8.13 -39.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604775973.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.437 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds