Wall clock time and date at job start Wed Apr 1 2020 01:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.60771 * 2 1 4 4 C 1.53371 * 109.75175 * 239.57506 * 2 1 3 5 5 N 1.46965 * 108.63751 * 190.74354 * 4 2 1 6 6 C 1.34776 * 120.59543 * 235.20516 * 5 4 2 7 7 O 1.21581 * 120.00078 * 185.24228 * 6 5 4 8 8 N 1.34771 * 120.00044 * 5.23786 * 6 5 4 9 9 C 1.46503 * 120.00310 * 185.38424 * 8 6 5 10 10 C 1.52999 * 109.47098 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47280 * 299.99619 * 10 9 8 12 12 C 1.53000 * 109.47471 * 60.00259 * 10 9 8 13 13 C 1.53007 * 109.46598 * 179.97438 * 10 9 8 14 14 C 1.50710 * 109.46735 * 180.02562 * 13 10 9 15 15 O 1.20822 * 120.00063 * 0.02562 * 14 13 10 16 16 O 1.34224 * 119.99851 * 179.97438 * 14 13 10 17 17 C 1.46967 * 118.80999 * 55.22552 * 5 4 2 18 18 C 1.53810 * 108.57880 * 304.64759 * 17 5 4 19 19 H 1.09003 * 109.75982 * 289.95047 * 18 17 5 20 20 C 1.53005 * 109.69601 * 169.29136 * 18 17 5 21 21 N 1.46955 * 109.61431 * 120.33929 * 2 1 3 22 22 C 1.36941 * 120.59536 * 355.12229 * 21 2 1 23 23 H 1.08000 * 119.99625 * 126.87863 * 22 21 2 24 24 C 1.38806 * 119.99851 * 306.88240 * 22 21 2 25 25 N 1.31626 * 120.00018 * 337.40338 * 24 22 21 26 26 Si 1.86799 * 120.00097 * 157.40174 * 24 22 21 27 27 H 1.48498 * 109.47288 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.47404 * 300.00252 * 26 24 22 29 29 H 1.48501 * 109.46844 * 60.00290 * 26 24 22 30 30 H 1.09001 * 109.46919 * 307.64181 * 1 2 3 31 31 H 1.08997 * 109.47388 * 67.64520 * 1 2 3 32 32 H 1.08998 * 109.47125 * 187.65038 * 1 2 3 33 33 H 1.09001 * 109.60962 * 310.49370 * 4 2 1 34 34 H 1.09000 * 109.60929 * 70.82386 * 4 2 1 35 35 H 0.97002 * 119.99990 * 5.38904 * 8 6 5 36 36 H 1.08999 * 109.46718 * 300.00159 * 9 8 6 37 37 H 1.08998 * 109.46975 * 59.99815 * 9 8 6 38 38 H 1.09004 * 109.46849 * 60.00167 * 11 10 9 39 39 H 1.09002 * 109.47242 * 180.02562 * 11 10 9 40 40 H 1.08998 * 109.47050 * 300.00620 * 11 10 9 41 41 H 1.08999 * 109.47458 * 59.99438 * 12 10 9 42 42 H 1.08995 * 109.47500 * 179.97438 * 12 10 9 43 43 H 1.09004 * 109.46698 * 299.99857 * 12 10 9 44 44 H 1.08999 * 109.47039 * 299.99771 * 13 10 9 45 45 H 1.08995 * 109.46908 * 60.00198 * 13 10 9 46 46 H 0.96692 * 117.00384 * 179.97438 * 16 14 13 47 47 H 1.09001 * 109.60974 * 64.51482 * 17 5 4 48 48 H 1.08998 * 109.60600 * 184.86026 * 17 5 4 49 49 H 1.08997 * 109.46772 * 304.58521 * 20 18 17 50 50 H 1.08999 * 109.46833 * 64.58635 * 20 18 17 51 51 H 1.09003 * 109.46940 * 184.58622 * 20 18 17 52 52 H 0.96997 * 120.00109 * 175.06895 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0483 -0.7310 -1.2447 5 7 3.4947 -0.9445 -1.0957 6 6 4.3533 -0.5073 -2.0380 7 8 5.5368 -0.7723 -1.9522 8 7 3.9000 0.2237 -3.0756 9 6 4.8103 0.5990 -4.1605 10 6 4.0496 1.4203 -5.2034 11 6 2.8987 0.5859 -5.7692 12 6 3.4893 2.6840 -4.5478 13 6 5.0006 1.8127 -6.3360 14 6 4.2515 2.6222 -7.3630 15 8 3.0777 2.8611 -7.2050 16 8 4.8885 3.0786 -8.4528 17 6 3.9880 -1.6439 0.0991 18 6 3.4701 -0.9079 1.3465 19 1 3.9708 0.0558 1.4401 20 6 3.7391 -1.7536 2.5929 21 7 2.0233 -0.6992 1.1947 22 6 1.1509 -1.1435 2.1522 23 1 1.1773 -2.1755 2.4697 24 6 0.2327 -0.2675 2.7146 25 7 0.4592 1.0288 2.6896 26 14 -1.3245 -0.9285 3.5069 27 1 -2.1330 0.2026 4.0285 28 1 -2.1148 -1.6767 2.4967 29 1 -0.9638 -1.8367 4.6251 30 1 -0.3633 0.6276 0.8138 31 1 -0.3634 0.3908 -0.9504 32 1 -0.3633 -1.0185 0.1368 33 1 1.5444 -1.6928 -1.3405 34 1 1.8545 -0.1268 -2.1310 35 1 2.9711 0.5015 -3.1041 36 1 5.6301 1.1937 -3.7575 37 1 5.2099 -0.3013 -4.6272 38 1 2.2214 0.3067 -4.9620 39 1 2.3570 1.1709 -6.5125 40 1 3.2980 -0.3144 -6.2362 41 1 4.3092 3.2784 -4.1447 42 1 2.9478 3.2693 -5.2909 43 1 2.8120 2.4048 -3.7407 44 1 5.8203 2.4072 -5.9326 45 1 5.4001 0.9126 -6.8032 46 1 4.3663 3.5927 -9.0835 47 1 3.6221 -2.6707 0.0991 48 1 5.0780 -1.6438 0.0990 49 1 3.2952 -2.7408 2.4648 50 1 4.8146 -1.8548 2.7381 51 1 3.2990 -1.2674 3.4636 52 1 -0.2141 1.6452 3.0177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604775974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:29 Heat of formation + Delta-G solvation = -87.767450 kcal Electronic energy + Delta-G solvation = -31981.435556 eV Core-core repulsion = 27789.241504 eV Total energy + Delta-G solvation = -4192.194052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99629 -39.96582 -38.06289 -37.17256 -36.18907 -34.13486 -33.57689 -32.57352 -31.20076 -29.00913 -27.80714 -27.44653 -26.94555 -25.84380 -25.23652 -23.56730 -22.27223 -20.39459 -20.08669 -19.47395 -19.01207 -18.48062 -17.64920 -16.88233 -16.34527 -16.06927 -15.94303 -15.38073 -14.99674 -14.53820 -14.46804 -14.37856 -14.23927 -13.70354 -13.66414 -13.51476 -13.17361 -12.96442 -12.95237 -12.57114 -12.16959 -12.05583 -12.00192 -11.62054 -11.55924 -11.49932 -11.30238 -11.26165 -11.13910 -11.03791 -11.01627 -10.74363 -10.53234 -10.46705 -10.36631 -10.29844 -10.04643 -9.93386 -9.80332 -9.53420 -8.90622 -8.28139 -7.89325 -6.44456 -5.76334 -3.59503 1.85826 2.61019 3.10921 3.30514 3.37592 3.40291 3.59760 4.17416 4.33984 4.41050 4.45681 4.55245 4.95426 5.09818 5.11560 5.13748 5.17381 5.26728 5.52680 5.56906 5.69904 5.71227 5.75195 5.77618 5.82210 5.89738 5.93496 6.03959 6.06848 6.14658 6.18967 6.19662 6.39522 6.39818 6.45805 6.55857 6.59358 6.68997 6.70023 6.81806 6.95240 7.12746 7.24320 7.33712 7.47016 7.56390 7.61555 7.81206 8.33841 8.56426 8.97691 9.13876 9.67497 10.45274 11.10662 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002734 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.571683 B =10237.295028 C =11328.505667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.183 3.817 3 H 0.030 0.970 4 C 0.095 3.905 5 N -0.615 5.615 6 C 0.705 3.295 7 O -0.605 6.605 8 N -0.748 5.748 9 C 0.152 3.848 10 C -0.064 4.064 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.103 4.103 14 C 0.480 3.520 15 O -0.503 6.503 16 O -0.520 6.520 17 C 0.119 3.881 18 C 0.155 3.845 19 H 0.029 0.971 20 C -0.127 4.127 21 N -0.575 5.575 22 C -0.264 4.264 23 H 0.054 0.946 24 C 0.038 3.962 25 N -0.871 5.871 26 Si 0.880 3.120 27 H -0.290 1.290 28 H -0.278 1.278 29 H -0.278 1.278 30 H 0.091 0.909 31 H 0.023 0.977 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.397 0.603 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.410 0.590 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.050 0.950 50 H 0.037 0.963 51 H 0.069 0.931 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 2.147 -18.796 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.075 3.925 3 H 0.048 0.952 4 C -0.030 4.030 5 N -0.350 5.350 6 C 0.407 3.593 7 O -0.485 6.485 8 N -0.408 5.408 9 C 0.027 3.973 10 C -0.064 4.064 11 C -0.213 4.213 12 C -0.214 4.214 13 C -0.141 4.141 14 C 0.323 3.677 15 O -0.391 6.391 16 O -0.332 6.332 17 C -0.006 4.006 18 C 0.048 3.952 19 H 0.046 0.954 20 C -0.185 4.185 21 N -0.300 5.300 22 C -0.394 4.394 23 H 0.071 0.929 24 C -0.164 4.164 25 N -0.510 5.510 26 Si 0.708 3.292 27 H -0.216 1.216 28 H -0.204 1.204 29 H -0.204 1.204 30 H 0.109 0.891 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.268 0.732 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.069 0.931 50 H 0.056 0.944 51 H 0.088 0.912 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.962 1.922 -18.259 19.636 hybrid contribution -1.752 0.332 -0.086 1.785 sum 5.210 2.254 -18.345 19.203 Atomic orbital electron populations 1.22031 0.95054 1.02908 1.00365 1.20576 0.93691 0.93467 0.84734 0.95204 1.22488 0.80033 1.00803 0.99662 1.47186 1.06351 1.59897 1.21599 1.15830 0.84901 0.78878 0.79682 1.90845 1.15004 1.64246 1.78421 1.45242 1.14067 1.58453 1.22995 1.21062 0.91740 0.98214 0.86290 1.20614 0.95408 0.96898 0.93511 1.22138 0.97789 0.99334 1.02057 1.22144 1.01519 0.96420 1.01342 1.21371 0.99042 1.00562 0.93170 1.23446 0.86109 0.77187 0.80957 1.90643 1.17540 1.55081 1.75860 1.84542 1.47980 1.67138 1.33548 1.22257 0.99145 0.95015 0.84176 1.21001 0.87083 0.95528 0.91561 0.95364 1.21648 0.98326 0.99879 0.98668 1.43950 0.99443 1.67667 1.18904 1.18628 1.12927 0.92284 1.15548 0.92880 1.25498 1.00410 0.95184 0.95352 1.70217 1.32605 1.01476 1.46687 0.86778 0.84292 0.78435 0.79725 1.21578 1.20435 1.20403 0.89098 0.95835 0.92721 0.91743 0.92418 0.76498 0.91509 0.91750 0.92298 0.89999 0.92803 0.92684 0.90012 0.92163 0.87139 0.87211 0.73163 0.92330 0.90198 0.93083 0.94401 0.91199 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 7.83 37.16 0.29 -2.77 16 2 C 0.18 3.90 3.26 -67.49 -0.22 3.68 16 3 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 4 C 0.10 1.68 5.90 -3.60 -0.02 1.66 16 5 N -0.62 -11.43 2.95 -177.94 -0.52 -11.96 16 6 C 0.71 12.82 8.29 -86.92 -0.72 12.10 16 7 O -0.61 -12.71 15.78 5.29 0.08 -12.63 16 8 N -0.75 -10.52 4.85 -65.23 -0.32 -10.83 16 9 C 0.15 1.72 4.57 -4.04 -0.02 1.70 16 10 C -0.06 -0.57 0.53 -154.51 -0.08 -0.66 16 11 C -0.16 -1.47 8.01 37.16 0.30 -1.17 16 12 C -0.16 -1.59 8.00 37.16 0.30 -1.29 16 13 C -0.10 -0.70 4.88 -27.87 -0.14 -0.84 16 14 C 0.48 3.73 7.74 36.01 0.28 4.01 16 15 O -0.50 -5.22 12.11 -18.75 -0.23 -5.45 16 16 O -0.52 -3.02 13.42 -39.24 -0.53 -3.55 16 17 C 0.12 2.28 5.92 -3.37 -0.02 2.26 16 18 C 0.15 3.31 3.67 -67.25 -0.25 3.06 16 19 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.13 -2.48 8.19 37.16 0.30 -2.18 16 21 N -0.58 -13.44 2.75 -156.76 -0.43 -13.87 16 22 C -0.26 -6.65 6.56 -15.06 -0.10 -6.75 16 23 H 0.05 1.36 7.29 -52.49 -0.38 0.98 16 24 C 0.04 0.98 3.17 -17.43 -0.06 0.92 16 25 N -0.87 -23.65 11.80 55.49 0.65 -22.99 16 26 Si 0.88 20.14 29.61 -169.99 -5.03 15.11 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 30 H 0.09 2.17 4.92 -51.93 -0.26 1.92 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 1.17 7.55 -51.93 -0.39 0.78 16 33 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 34 H 0.06 0.86 5.59 -51.93 -0.29 0.57 16 35 H 0.40 5.17 3.67 -40.82 -0.15 5.03 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.59 6.86 -51.93 -0.36 0.23 16 39 H 0.08 0.84 5.52 -51.93 -0.29 0.55 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.88 5.51 -51.93 -0.29 0.60 16 43 H 0.06 0.67 6.86 -51.93 -0.36 0.31 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.41 0.81 9.10 45.56 0.41 1.23 16 47 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 48 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 49 H 0.05 0.97 7.67 -51.93 -0.40 0.57 16 50 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.07 1.51 7.55 -51.93 -0.39 1.12 16 52 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -31.72 392.19 -8.26 -39.98 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.70 Total: 6.54 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.15 Total: 13.74 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.62 Total: -59.66 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.67 Total: -21.62 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.72 -8.26 -39.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604775974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.787 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds