Wall clock time and date at job start Wed Apr 1 2020 01:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.60771 * 2 1 4 4 C 1.53371 * 109.75175 * 239.57506 * 2 1 3 5 5 N 1.46965 * 108.63751 * 190.74354 * 4 2 1 6 6 C 1.34776 * 120.59543 * 235.20516 * 5 4 2 7 7 O 1.21581 * 120.00078 * 185.24228 * 6 5 4 8 8 N 1.34771 * 120.00044 * 5.23786 * 6 5 4 9 9 C 1.46503 * 120.00310 * 185.38424 * 8 6 5 10 10 C 1.52999 * 109.47098 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47280 * 299.99619 * 10 9 8 12 12 C 1.53000 * 109.47471 * 60.00259 * 10 9 8 13 13 C 1.53007 * 109.46598 * 179.97438 * 10 9 8 14 14 C 1.50710 * 109.46735 * 180.02562 * 13 10 9 15 15 O 1.20822 * 120.00063 * 0.02562 * 14 13 10 16 16 O 1.34224 * 119.99851 * 179.97438 * 14 13 10 17 17 C 1.46967 * 118.80999 * 55.22552 * 5 4 2 18 18 C 1.53810 * 108.57880 * 304.64759 * 17 5 4 19 19 H 1.09003 * 109.75982 * 289.95047 * 18 17 5 20 20 C 1.53005 * 109.69601 * 169.29136 * 18 17 5 21 21 N 1.46955 * 109.61431 * 120.33929 * 2 1 3 22 22 C 1.36941 * 120.59536 * 355.12229 * 21 2 1 23 23 H 1.08000 * 119.99625 * 126.87863 * 22 21 2 24 24 C 1.38806 * 119.99851 * 306.88240 * 22 21 2 25 25 N 1.31626 * 120.00018 * 337.40338 * 24 22 21 26 26 Si 1.86799 * 120.00097 * 157.40174 * 24 22 21 27 27 H 1.48498 * 109.47288 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.47404 * 300.00252 * 26 24 22 29 29 H 1.48501 * 109.46844 * 60.00290 * 26 24 22 30 30 H 1.09001 * 109.46919 * 307.64181 * 1 2 3 31 31 H 1.08997 * 109.47388 * 67.64520 * 1 2 3 32 32 H 1.08998 * 109.47125 * 187.65038 * 1 2 3 33 33 H 1.09001 * 109.60962 * 310.49370 * 4 2 1 34 34 H 1.09000 * 109.60929 * 70.82386 * 4 2 1 35 35 H 0.97002 * 119.99990 * 5.38904 * 8 6 5 36 36 H 1.08999 * 109.46718 * 300.00159 * 9 8 6 37 37 H 1.08998 * 109.46975 * 59.99815 * 9 8 6 38 38 H 1.09004 * 109.46849 * 60.00167 * 11 10 9 39 39 H 1.09002 * 109.47242 * 180.02562 * 11 10 9 40 40 H 1.08998 * 109.47050 * 300.00620 * 11 10 9 41 41 H 1.08999 * 109.47458 * 59.99438 * 12 10 9 42 42 H 1.08995 * 109.47500 * 179.97438 * 12 10 9 43 43 H 1.09004 * 109.46698 * 299.99857 * 12 10 9 44 44 H 1.08999 * 109.47039 * 299.99771 * 13 10 9 45 45 H 1.08995 * 109.46908 * 60.00198 * 13 10 9 46 46 H 0.96692 * 117.00384 * 179.97438 * 16 14 13 47 47 H 1.09001 * 109.60974 * 64.51482 * 17 5 4 48 48 H 1.08998 * 109.60600 * 184.86026 * 17 5 4 49 49 H 1.08997 * 109.46772 * 304.58521 * 20 18 17 50 50 H 1.08999 * 109.46833 * 64.58635 * 20 18 17 51 51 H 1.09003 * 109.46940 * 184.58622 * 20 18 17 52 52 H 0.96997 * 120.00109 * 175.06895 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0483 -0.7310 -1.2447 5 7 3.4947 -0.9445 -1.0957 6 6 4.3533 -0.5073 -2.0380 7 8 5.5368 -0.7723 -1.9522 8 7 3.9000 0.2237 -3.0756 9 6 4.8103 0.5990 -4.1605 10 6 4.0496 1.4203 -5.2034 11 6 2.8987 0.5859 -5.7692 12 6 3.4893 2.6840 -4.5478 13 6 5.0006 1.8127 -6.3360 14 6 4.2515 2.6222 -7.3630 15 8 3.0777 2.8611 -7.2050 16 8 4.8885 3.0786 -8.4528 17 6 3.9880 -1.6439 0.0991 18 6 3.4701 -0.9079 1.3465 19 1 3.9708 0.0558 1.4401 20 6 3.7391 -1.7536 2.5929 21 7 2.0233 -0.6992 1.1947 22 6 1.1509 -1.1435 2.1522 23 1 1.1773 -2.1755 2.4697 24 6 0.2327 -0.2675 2.7146 25 7 0.4592 1.0288 2.6896 26 14 -1.3245 -0.9285 3.5069 27 1 -2.1330 0.2026 4.0285 28 1 -2.1148 -1.6767 2.4967 29 1 -0.9638 -1.8367 4.6251 30 1 -0.3633 0.6276 0.8138 31 1 -0.3634 0.3908 -0.9504 32 1 -0.3633 -1.0185 0.1368 33 1 1.5444 -1.6928 -1.3405 34 1 1.8545 -0.1268 -2.1310 35 1 2.9711 0.5015 -3.1041 36 1 5.6301 1.1937 -3.7575 37 1 5.2099 -0.3013 -4.6272 38 1 2.2214 0.3067 -4.9620 39 1 2.3570 1.1709 -6.5125 40 1 3.2980 -0.3144 -6.2362 41 1 4.3092 3.2784 -4.1447 42 1 2.9478 3.2693 -5.2909 43 1 2.8120 2.4048 -3.7407 44 1 5.8203 2.4072 -5.9326 45 1 5.4001 0.9126 -6.8032 46 1 4.3663 3.5927 -9.0835 47 1 3.6221 -2.6707 0.0991 48 1 5.0780 -1.6438 0.0990 49 1 3.2952 -2.7408 2.4648 50 1 4.8146 -1.8548 2.7381 51 1 3.2990 -1.2674 3.4636 52 1 -0.2141 1.6452 3.0177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604775974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:28 Heat of formation + Delta-G solvation = -108.257381 kcal Electronic energy + Delta-G solvation = -31982.324066 eV Core-core repulsion = 27789.241504 eV Total energy + Delta-G solvation = -4193.082562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73584 -41.23552 -39.28601 -38.35713 -36.86948 -35.78864 -34.99137 -33.96025 -33.03793 -29.73802 -29.46416 -28.21944 -28.20425 -27.39310 -26.73815 -25.17790 -22.95803 -22.06552 -21.61826 -20.76866 -20.13890 -19.23575 -18.78389 -17.87598 -17.64189 -17.20835 -16.92055 -16.73870 -16.60390 -16.26002 -15.63812 -15.56909 -15.37171 -15.28567 -14.78033 -14.70540 -14.43968 -14.28390 -13.67175 -13.60777 -13.55978 -13.37027 -13.22673 -13.03092 -12.95182 -12.70327 -12.68474 -12.45525 -12.32036 -12.31167 -12.21252 -12.14466 -11.94512 -11.87803 -11.78265 -11.71872 -11.64996 -11.51745 -11.12168 -10.98569 -10.24830 -10.06999 -9.46230 -8.37978 -7.67289 -5.57971 1.29709 1.47651 1.51504 1.56033 1.67679 2.16465 2.24139 2.51951 2.96256 3.23637 3.52107 3.60082 3.76591 3.78604 4.13864 4.22776 4.24371 4.30550 4.49269 4.49981 4.53123 4.55994 4.59492 4.63566 4.72010 4.75752 4.79340 4.86837 4.88013 4.90113 4.97106 5.02000 5.04614 5.05285 5.14628 5.20446 5.34507 5.39140 5.41420 5.44810 5.54984 5.61303 5.65616 5.76685 5.83688 5.90194 6.06037 6.58959 6.97585 7.09698 7.24707 7.57233 7.79445 8.53802 9.13861 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002734 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.571683 B =10237.295028 C =11328.505667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.180 3.820 3 H -0.001 1.001 4 C 0.109 3.891 5 N -0.622 5.622 6 C 0.702 3.298 7 O -0.634 6.634 8 N -0.735 5.735 9 C 0.150 3.850 10 C -0.053 4.053 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.103 4.103 14 C 0.485 3.515 15 O -0.534 6.534 16 O -0.517 6.517 17 C 0.131 3.869 18 C 0.151 3.849 19 H -0.002 1.002 20 C -0.117 4.117 21 N -0.589 5.589 22 C -0.263 4.263 23 H 0.050 0.950 24 C 0.002 3.998 25 N -0.905 5.905 26 Si 0.933 3.067 27 H -0.297 1.297 28 H -0.270 1.270 29 H -0.277 1.277 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.126 0.874 45 H 0.131 0.869 46 H 0.426 0.574 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.041 0.959 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 1.216 -20.851 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 H 0.017 0.983 4 C -0.016 4.016 5 N -0.357 5.357 6 C 0.404 3.596 7 O -0.517 6.517 8 N -0.394 5.394 9 C 0.026 3.974 10 C -0.054 4.054 11 C -0.211 4.211 12 C -0.213 4.213 13 C -0.141 4.141 14 C 0.329 3.671 15 O -0.425 6.425 16 O -0.330 6.330 17 C 0.006 3.994 18 C 0.044 3.956 19 H 0.016 0.984 20 C -0.175 4.175 21 N -0.314 5.314 22 C -0.393 4.393 23 H 0.067 0.933 24 C -0.197 4.197 25 N -0.546 5.546 26 Si 0.760 3.240 27 H -0.223 1.223 28 H -0.196 1.196 29 H -0.203 1.203 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.242 0.758 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.288 0.712 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.084 0.916 51 H 0.060 0.940 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.283 0.998 -20.370 21.655 hybrid contribution -1.782 0.690 0.505 1.977 sum 5.500 1.688 -19.865 20.681 Atomic orbital electron populations 1.21894 0.94691 1.01974 1.01053 1.20568 0.94068 0.92176 0.85824 0.98338 1.22300 0.79448 1.01096 0.98721 1.47223 1.06751 1.60085 1.21636 1.15980 0.84394 0.79039 0.80213 1.90821 1.16175 1.65436 1.79219 1.45226 1.14753 1.56961 1.22459 1.21240 0.91448 0.98799 0.85864 1.20480 0.95536 0.95797 0.93539 1.22106 0.97693 0.99645 1.01632 1.22117 1.01317 0.97015 1.00815 1.21389 0.98622 1.01742 0.92353 1.23531 0.85605 0.76717 0.81262 1.90643 1.18860 1.56387 1.76620 1.84501 1.48075 1.67104 1.33360 1.22012 0.98957 0.95028 0.83427 1.21073 0.86036 0.94767 0.93689 0.98441 1.21534 1.00058 0.99308 0.96567 1.44219 1.00068 1.67620 1.19471 1.18753 1.12945 0.92008 1.15544 0.93277 1.26005 1.02576 0.95166 0.95980 1.70318 1.33227 1.02514 1.48513 0.85932 0.81461 0.77537 0.79038 1.22320 1.19556 1.20284 0.91992 0.92537 0.93269 0.90968 0.89392 0.75844 0.91863 0.91014 0.93056 0.90686 0.91777 0.92478 0.90549 0.93456 0.85561 0.85090 0.71231 0.91400 0.90247 0.92439 0.91603 0.93952 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 7.83 71.98 0.56 -5.15 16 2 C 0.18 7.69 3.26 45.03 0.15 7.84 16 3 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 4 C 0.11 3.67 5.90 86.42 0.51 4.18 16 5 N -0.62 -22.39 2.95 -835.15 -2.46 -24.85 16 6 C 0.70 24.60 8.29 179.06 1.48 26.08 16 7 O -0.63 -25.94 15.78 -3.97 -0.06 -26.00 16 8 N -0.74 -19.45 4.85 -478.55 -2.32 -21.77 16 9 C 0.15 3.10 4.57 86.38 0.39 3.49 16 10 C -0.05 -0.85 0.53 -52.18 -0.03 -0.88 16 11 C -0.15 -2.59 8.01 71.98 0.58 -2.01 16 12 C -0.16 -2.98 8.00 71.98 0.58 -2.40 16 13 C -0.10 -1.13 4.88 29.85 0.15 -0.98 16 14 C 0.48 6.51 7.74 71.24 0.55 7.07 16 15 O -0.53 -10.39 12.11 21.98 0.27 -10.12 16 16 O -0.52 -4.75 13.42 -51.36 -0.69 -5.44 16 17 C 0.13 4.91 5.92 86.56 0.51 5.42 16 18 C 0.15 6.50 3.67 45.18 0.17 6.66 16 19 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 20 C -0.12 -4.53 8.19 71.98 0.59 -3.94 16 21 N -0.59 -27.71 2.75 -649.88 -1.79 -29.50 16 22 C -0.26 -13.27 6.56 84.03 0.55 -12.72 16 23 H 0.05 2.51 7.29 -2.91 -0.02 2.49 16 24 C 0.00 0.12 3.17 84.86 0.27 0.39 16 25 N -0.90 -50.34 11.80 21.65 0.26 -50.08 16 26 Si 0.93 41.61 29.61 68.60 2.03 43.64 16 27 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 30 H 0.06 2.97 4.92 -2.39 -0.01 2.96 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 2.05 7.55 -2.39 -0.02 2.04 16 33 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 34 H 0.09 2.41 5.59 -2.39 -0.01 2.40 16 35 H 0.40 9.76 3.67 -92.71 -0.34 9.42 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 0.92 6.86 -2.39 -0.02 0.91 16 39 H 0.07 1.42 5.52 -2.39 -0.01 1.41 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.59 5.51 -2.39 -0.01 1.57 16 43 H 0.05 1.00 6.86 -2.39 -0.02 0.99 16 44 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.43 0.76 9.10 -74.06 -0.67 0.09 16 47 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 48 H 0.08 3.00 7.02 -2.39 -0.02 2.99 16 49 H 0.06 2.13 7.67 -2.39 -0.02 2.11 16 50 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.04 1.85 7.55 -2.39 -0.02 1.83 16 52 H 0.25 13.61 8.32 -92.71 -0.77 12.84 16 Total: -1.00 -69.14 392.19 2.17 -66.97 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.07 Total: 24.09 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 7.01 Total: 33.06 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -6.31 Total: -126.20 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.49 Total: -41.56 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -69.14 2.17 -66.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604775974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.286 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds