Wall clock time and date at job start Wed Apr 1 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.61045 * 2 1 4 4 C 1.53371 * 109.61344 * 239.65967 * 2 1 3 5 5 N 1.46958 * 108.63652 * 190.83056 * 4 2 1 6 6 C 1.34782 * 120.59467 * 235.20243 * 5 4 2 7 7 O 1.21583 * 120.00008 * 184.79952 * 6 5 4 8 8 N 1.34778 * 119.99480 * 4.79686 * 6 5 4 9 9 C 1.46505 * 119.99203 * 175.32759 * 8 6 5 10 10 C 1.53003 * 109.46693 * 179.72674 * 9 8 6 11 11 C 1.53007 * 109.46800 * 299.99840 * 10 9 8 12 12 C 1.52998 * 109.47133 * 59.99796 * 10 9 8 13 13 C 1.52996 * 109.47136 * 180.02562 * 10 9 8 14 14 C 1.50705 * 109.47116 * 180.02562 * 13 10 9 15 15 O 1.20822 * 119.99745 * 359.97438 * 14 13 10 16 16 O 1.34226 * 119.99640 * 179.97438 * 14 13 10 17 17 C 1.46962 * 118.81213 * 55.47886 * 5 4 2 18 18 C 1.53808 * 108.39875 * 304.47811 * 17 5 4 19 19 H 1.09004 * 109.67483 * 169.38750 * 18 17 5 20 20 C 1.52998 * 109.74585 * 289.85108 * 18 17 5 21 21 N 1.46966 * 108.57554 * 49.64180 * 18 17 5 22 22 C 1.36941 * 120.59687 * 124.66765 * 21 18 17 23 23 H 1.07990 * 120.00258 * 218.64017 * 22 21 18 24 24 C 1.38811 * 119.99499 * 38.64058 * 22 21 18 25 25 N 1.31622 * 120.00473 * 0.54695 * 24 22 21 26 26 Si 1.86805 * 119.99869 * 180.54806 * 24 22 21 27 27 H 1.48500 * 109.46990 * 89.99785 * 26 24 22 28 28 H 1.48500 * 109.47537 * 210.00140 * 26 24 22 29 29 H 1.48501 * 109.47050 * 330.00003 * 26 24 22 30 30 H 1.08998 * 109.47118 * 180.34475 * 1 2 3 31 31 H 1.09005 * 109.47055 * 300.33753 * 1 2 3 32 32 H 1.08998 * 109.47466 * 60.34019 * 1 2 3 33 33 H 1.09002 * 109.60543 * 71.08248 * 4 2 1 34 34 H 1.09003 * 109.60870 * 310.57698 * 4 2 1 35 35 H 0.96993 * 120.00184 * 355.05274 * 8 6 5 36 36 H 1.08992 * 109.47274 * 299.72316 * 9 8 6 37 37 H 1.09001 * 109.47448 * 59.72768 * 9 8 6 38 38 H 1.08997 * 109.47427 * 60.00570 * 11 10 9 39 39 H 1.09005 * 109.46487 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.47327 * 299.99897 * 11 10 9 41 41 H 1.08992 * 109.47166 * 60.00155 * 12 10 9 42 42 H 1.09005 * 109.46867 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.47465 * 299.99657 * 12 10 9 44 44 H 1.09006 * 109.47052 * 299.99501 * 13 10 9 45 45 H 1.08992 * 109.47550 * 59.99604 * 13 10 9 46 46 H 0.96706 * 116.99884 * 179.97438 * 16 14 13 47 47 H 1.09000 * 109.61430 * 64.26556 * 17 5 4 48 48 H 1.09004 * 109.60805 * 184.77625 * 17 5 4 49 49 H 1.08999 * 109.47433 * 179.15390 * 20 18 17 50 50 H 1.09000 * 109.46552 * 299.15502 * 20 18 17 51 51 H 1.09000 * 109.47155 * 59.15317 * 20 18 17 52 52 H 0.97004 * 120.00047 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0448 -0.7298 -1.2469 5 7 3.4908 -0.9472 -1.1002 6 6 4.3492 -0.5101 -2.0429 7 8 5.5334 -0.7714 -1.9549 8 7 3.8949 0.2165 -3.0832 9 6 4.8393 0.7780 -4.0523 10 6 4.0693 1.5465 -5.1282 11 6 3.1081 0.5958 -5.8446 12 6 3.2743 2.6791 -4.4755 13 6 5.0554 2.1325 -6.1406 14 6 4.2970 2.8900 -7.2000 15 8 3.0915 2.9541 -7.1505 16 8 4.9608 3.4933 -8.1985 17 6 3.9835 -1.6550 0.0897 18 6 3.4693 -0.9203 1.3393 19 1 3.6603 -1.5255 2.2255 20 6 4.1801 0.4278 1.4753 21 7 2.0233 -0.7029 1.1927 22 6 1.1510 -1.1469 2.1505 23 1 0.1990 -1.5665 1.8611 24 6 1.4908 -1.0577 3.4934 25 7 2.6466 -0.5365 3.8467 26 14 0.3075 -1.6775 4.7993 27 1 0.5855 -3.1090 5.0799 28 1 0.4842 -0.8859 6.0433 29 1 -1.0878 -1.5302 4.3130 30 1 -0.3633 -1.0276 0.0062 31 1 -0.3633 0.5191 0.8870 32 1 -0.3634 0.5085 -0.8930 33 1 1.8539 -0.1219 -2.1313 34 1 1.5384 -1.6902 -1.3438 35 1 2.9425 0.3642 -3.1924 36 1 5.5239 1.4553 -3.5419 37 1 5.4056 -0.0289 -4.5173 38 1 2.4055 0.1780 -5.1236 39 1 2.5599 1.1432 -6.6114 40 1 3.6744 -0.2111 -6.3096 41 1 3.9590 3.3564 -3.9651 42 1 2.7254 3.2264 -5.2419 43 1 2.5717 2.2614 -3.7545 44 1 5.7404 2.8097 -5.6305 45 1 5.6214 1.3254 -6.6056 46 1 4.4313 3.9669 -8.8546 47 1 3.6121 -2.6798 0.0858 48 1 5.0736 -1.6584 0.0881 49 1 3.8017 0.9511 2.3534 50 1 5.2522 0.2638 1.5839 51 1 3.9926 1.0288 0.5855 52 1 2.8839 -0.4739 4.7852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604775975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:33 Heat of formation + Delta-G solvation = -89.698039 kcal Electronic energy + Delta-G solvation = -32108.046976 eV Core-core repulsion = 27915.769208 eV Total energy + Delta-G solvation = -4192.277768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01170 -39.97121 -38.08345 -37.14243 -36.19347 -34.00857 -33.36711 -32.46662 -31.13448 -29.00769 -27.90823 -27.47213 -26.84215 -26.16549 -24.84336 -23.58939 -22.34657 -20.86177 -20.07445 -19.41414 -18.66376 -18.45523 -17.69703 -16.88964 -16.36188 -16.13979 -15.68577 -15.39755 -15.12277 -14.58551 -14.33737 -14.29002 -14.02705 -13.73264 -13.57353 -13.34294 -13.19111 -13.06119 -12.89721 -12.65606 -12.21198 -12.03626 -11.91506 -11.68629 -11.63045 -11.43678 -11.28468 -11.18573 -11.16951 -11.05142 -10.92674 -10.78713 -10.60532 -10.55825 -10.31872 -10.12172 -10.00795 -9.77061 -9.74495 -9.38376 -8.87585 -8.44043 -7.98171 -6.46270 -5.80646 -3.37799 1.84008 2.60079 3.13184 3.34703 3.42331 3.42595 3.65888 4.17828 4.34074 4.44191 4.44589 4.54357 4.94103 5.09459 5.11278 5.16156 5.19999 5.37757 5.50970 5.56249 5.65887 5.67981 5.70094 5.75714 5.80523 5.87764 5.88357 5.98881 6.09313 6.16228 6.19650 6.29587 6.34025 6.37032 6.43011 6.52700 6.69188 6.72673 6.85423 6.94342 6.99410 7.09383 7.13004 7.39674 7.54590 7.69067 7.74367 7.86078 8.38436 8.50971 9.02810 9.22357 9.78763 10.41590 11.25128 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.002571 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.340306 B =10889.572952 C =11440.286328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.156 3.844 3 H 0.030 0.970 4 C 0.101 3.899 5 N -0.612 5.612 6 C 0.705 3.295 7 O -0.602 6.602 8 N -0.749 5.749 9 C 0.152 3.848 10 C -0.064 4.064 11 C -0.155 4.155 12 C -0.156 4.156 13 C -0.104 4.104 14 C 0.481 3.519 15 O -0.504 6.504 16 O -0.520 6.520 17 C 0.109 3.891 18 C 0.181 3.819 19 H 0.105 0.895 20 C -0.135 4.135 21 N -0.580 5.580 22 C -0.256 4.256 23 H 0.065 0.935 24 C 0.014 3.986 25 N -0.896 5.896 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.410 0.590 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.026 0.974 51 H 0.019 0.981 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 5.918 -20.906 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.025 4.025 5 N -0.347 5.347 6 C 0.406 3.594 7 O -0.482 6.482 8 N -0.409 5.409 9 C 0.027 3.973 10 C -0.064 4.064 11 C -0.213 4.213 12 C -0.214 4.214 13 C -0.142 4.142 14 C 0.324 3.676 15 O -0.392 6.392 16 O -0.332 6.332 17 C -0.015 4.015 18 C 0.074 3.926 19 H 0.123 0.877 20 C -0.194 4.194 21 N -0.303 5.303 22 C -0.385 4.385 23 H 0.083 0.917 24 C -0.186 4.186 25 N -0.539 5.539 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.268 0.732 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.045 0.955 51 H 0.038 0.962 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.220 5.560 -20.316 21.308 hybrid contribution -1.371 0.150 0.276 1.407 sum 1.849 5.710 -20.040 20.920 Atomic orbital electron populations 1.21749 0.95371 1.01637 1.00452 1.20775 0.93061 0.93942 0.87414 0.95244 1.22288 0.80819 1.00378 0.98993 1.47178 1.05988 1.59847 1.21702 1.15840 0.85039 0.78821 0.79668 1.90852 1.15099 1.63672 1.78582 1.45240 1.10122 1.57807 1.27746 1.21053 0.90961 0.96778 0.88509 1.20612 0.95267 0.96478 0.94061 1.22132 0.99258 0.98570 1.01293 1.22137 1.00373 0.97604 1.01241 1.21373 0.98702 1.00537 0.93578 1.23449 0.86778 0.76312 0.81104 1.90637 1.16001 1.57986 1.74609 1.84550 1.45886 1.65048 1.37690 1.22494 0.99339 0.94845 0.84790 1.20848 0.83016 0.94815 0.93970 0.87690 1.21950 0.97490 0.99388 1.00581 1.44009 1.01812 1.64355 1.20121 1.19040 0.99894 1.34362 0.85238 0.91722 1.25382 0.97023 0.98433 0.97740 1.69904 1.21000 1.47054 1.15942 0.86342 0.80986 0.78119 0.81542 1.21459 1.21708 1.20463 0.92620 0.91591 0.94324 0.92389 0.91814 0.76734 0.91666 0.91620 0.92378 0.90036 0.92789 0.92669 0.90050 0.92252 0.87130 0.87179 0.73166 0.92735 0.90223 0.90708 0.95470 0.96165 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.05 37.15 0.30 -2.03 16 2 C 0.16 3.03 3.22 -67.49 -0.22 2.81 16 3 H 0.03 0.62 7.41 -51.92 -0.38 0.24 16 4 C 0.10 1.67 5.90 -3.60 -0.02 1.65 16 5 N -0.61 -11.33 2.58 -177.95 -0.46 -11.79 16 6 C 0.70 12.81 8.30 -86.91 -0.72 12.08 16 7 O -0.60 -12.89 15.77 5.29 0.08 -12.81 16 8 N -0.75 -10.28 4.87 -65.22 -0.32 -10.60 16 9 C 0.15 1.70 4.57 -4.04 -0.02 1.69 16 10 C -0.06 -0.55 0.53 -154.51 -0.08 -0.63 16 11 C -0.16 -1.40 8.00 37.16 0.30 -1.10 16 12 C -0.16 -1.50 8.00 37.16 0.30 -1.20 16 13 C -0.10 -0.69 4.88 -27.88 -0.14 -0.82 16 14 C 0.48 3.62 7.74 36.01 0.28 3.90 16 15 O -0.50 -5.05 12.11 -18.75 -0.23 -5.28 16 16 O -0.52 -2.93 13.42 -39.25 -0.53 -3.46 16 17 C 0.11 2.24 5.99 -3.37 -0.02 2.22 16 18 C 0.18 4.15 2.33 -67.26 -0.16 3.99 16 19 H 0.11 2.73 6.26 -51.93 -0.32 2.40 16 20 C -0.14 -3.09 8.93 37.16 0.33 -2.76 16 21 N -0.58 -13.46 2.66 -156.76 -0.42 -13.88 16 22 C -0.26 -6.47 8.32 -15.06 -0.13 -6.59 16 23 H 0.07 1.61 6.48 -52.49 -0.34 1.27 16 24 C 0.01 0.36 5.22 -17.43 -0.09 0.27 16 25 N -0.90 -24.39 9.75 55.49 0.54 -23.85 16 26 Si 0.90 20.81 29.55 -169.99 -5.02 15.78 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.05 0.97 7.30 -51.93 -0.38 0.59 16 31 H 0.07 1.26 7.75 -51.93 -0.40 0.86 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.78 5.55 -51.93 -0.29 0.50 16 34 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 35 H 0.39 4.83 3.61 -40.82 -0.15 4.69 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.54 6.86 -51.93 -0.36 0.19 16 39 H 0.08 0.80 5.52 -51.93 -0.29 0.51 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.83 5.52 -51.93 -0.29 0.55 16 43 H 0.06 0.60 6.86 -51.93 -0.36 0.25 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.41 0.73 9.10 45.56 0.41 1.14 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.08 1.68 7.00 -51.93 -0.36 1.31 16 49 H 0.07 1.90 6.97 -51.93 -0.36 1.54 16 50 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.02 0.44 7.02 -51.93 -0.36 0.08 16 52 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -31.77 390.96 -8.13 -39.90 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.59 Total: 6.60 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -0.08 Total: 13.47 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.65 Total: -60.11 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.67 Total: -21.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.77 -8.13 -39.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604775975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.796 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds