Wall clock time and date at job start Wed Apr 1 2020 01:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.61045 * 2 1 4 4 C 1.53371 * 109.61344 * 239.65967 * 2 1 3 5 5 N 1.46958 * 108.63652 * 190.83056 * 4 2 1 6 6 C 1.34782 * 120.59467 * 235.20243 * 5 4 2 7 7 O 1.21583 * 120.00008 * 184.79952 * 6 5 4 8 8 N 1.34778 * 119.99480 * 4.79686 * 6 5 4 9 9 C 1.46505 * 119.99203 * 175.32759 * 8 6 5 10 10 C 1.53003 * 109.46693 * 179.72674 * 9 8 6 11 11 C 1.53007 * 109.46800 * 299.99840 * 10 9 8 12 12 C 1.52998 * 109.47133 * 59.99796 * 10 9 8 13 13 C 1.52996 * 109.47136 * 180.02562 * 10 9 8 14 14 C 1.50705 * 109.47116 * 180.02562 * 13 10 9 15 15 O 1.20822 * 119.99745 * 359.97438 * 14 13 10 16 16 O 1.34226 * 119.99640 * 179.97438 * 14 13 10 17 17 C 1.46962 * 118.81213 * 55.47886 * 5 4 2 18 18 C 1.53808 * 108.39875 * 304.47811 * 17 5 4 19 19 H 1.09004 * 109.67483 * 169.38750 * 18 17 5 20 20 C 1.52998 * 109.74585 * 289.85108 * 18 17 5 21 21 N 1.46966 * 108.57554 * 49.64180 * 18 17 5 22 22 C 1.36941 * 120.59687 * 124.66765 * 21 18 17 23 23 H 1.07990 * 120.00258 * 218.64017 * 22 21 18 24 24 C 1.38811 * 119.99499 * 38.64058 * 22 21 18 25 25 N 1.31622 * 120.00473 * 0.54695 * 24 22 21 26 26 Si 1.86805 * 119.99869 * 180.54806 * 24 22 21 27 27 H 1.48500 * 109.46990 * 89.99785 * 26 24 22 28 28 H 1.48500 * 109.47537 * 210.00140 * 26 24 22 29 29 H 1.48501 * 109.47050 * 330.00003 * 26 24 22 30 30 H 1.08998 * 109.47118 * 180.34475 * 1 2 3 31 31 H 1.09005 * 109.47055 * 300.33753 * 1 2 3 32 32 H 1.08998 * 109.47466 * 60.34019 * 1 2 3 33 33 H 1.09002 * 109.60543 * 71.08248 * 4 2 1 34 34 H 1.09003 * 109.60870 * 310.57698 * 4 2 1 35 35 H 0.96993 * 120.00184 * 355.05274 * 8 6 5 36 36 H 1.08992 * 109.47274 * 299.72316 * 9 8 6 37 37 H 1.09001 * 109.47448 * 59.72768 * 9 8 6 38 38 H 1.08997 * 109.47427 * 60.00570 * 11 10 9 39 39 H 1.09005 * 109.46487 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.47327 * 299.99897 * 11 10 9 41 41 H 1.08992 * 109.47166 * 60.00155 * 12 10 9 42 42 H 1.09005 * 109.46867 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.47465 * 299.99657 * 12 10 9 44 44 H 1.09006 * 109.47052 * 299.99501 * 13 10 9 45 45 H 1.08992 * 109.47550 * 59.99604 * 13 10 9 46 46 H 0.96706 * 116.99884 * 179.97438 * 16 14 13 47 47 H 1.09000 * 109.61430 * 64.26556 * 17 5 4 48 48 H 1.09004 * 109.60805 * 184.77625 * 17 5 4 49 49 H 1.08999 * 109.47433 * 179.15390 * 20 18 17 50 50 H 1.09000 * 109.46552 * 299.15502 * 20 18 17 51 51 H 1.09000 * 109.47155 * 59.15317 * 20 18 17 52 52 H 0.97004 * 120.00047 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0448 -0.7298 -1.2469 5 7 3.4908 -0.9472 -1.1002 6 6 4.3492 -0.5101 -2.0429 7 8 5.5334 -0.7714 -1.9549 8 7 3.8949 0.2165 -3.0832 9 6 4.8393 0.7780 -4.0523 10 6 4.0693 1.5465 -5.1282 11 6 3.1081 0.5958 -5.8446 12 6 3.2743 2.6791 -4.4755 13 6 5.0554 2.1325 -6.1406 14 6 4.2970 2.8900 -7.2000 15 8 3.0915 2.9541 -7.1505 16 8 4.9608 3.4933 -8.1985 17 6 3.9835 -1.6550 0.0897 18 6 3.4693 -0.9203 1.3393 19 1 3.6603 -1.5255 2.2255 20 6 4.1801 0.4278 1.4753 21 7 2.0233 -0.7029 1.1927 22 6 1.1510 -1.1469 2.1505 23 1 0.1990 -1.5665 1.8611 24 6 1.4908 -1.0577 3.4934 25 7 2.6466 -0.5365 3.8467 26 14 0.3075 -1.6775 4.7993 27 1 0.5855 -3.1090 5.0799 28 1 0.4842 -0.8859 6.0433 29 1 -1.0878 -1.5302 4.3130 30 1 -0.3633 -1.0276 0.0062 31 1 -0.3633 0.5191 0.8870 32 1 -0.3634 0.5085 -0.8930 33 1 1.8539 -0.1219 -2.1313 34 1 1.5384 -1.6902 -1.3438 35 1 2.9425 0.3642 -3.1924 36 1 5.5239 1.4553 -3.5419 37 1 5.4056 -0.0289 -4.5173 38 1 2.4055 0.1780 -5.1236 39 1 2.5599 1.1432 -6.6114 40 1 3.6744 -0.2111 -6.3096 41 1 3.9590 3.3564 -3.9651 42 1 2.7254 3.2264 -5.2419 43 1 2.5717 2.2614 -3.7545 44 1 5.7404 2.8097 -5.6305 45 1 5.6214 1.3254 -6.6056 46 1 4.4313 3.9669 -8.8546 47 1 3.6121 -2.6798 0.0858 48 1 5.0736 -1.6584 0.0881 49 1 3.8017 0.9511 2.3534 50 1 5.2522 0.2638 1.5839 51 1 3.9926 1.0288 0.5855 52 1 2.8839 -0.4739 4.7852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604775975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:32 Heat of formation + Delta-G solvation = -109.818108 kcal Electronic energy + Delta-G solvation = -32108.919448 eV Core-core repulsion = 27915.769208 eV Total energy + Delta-G solvation = -4193.150240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73065 -41.24237 -39.26990 -38.31397 -36.85647 -35.65157 -34.65717 -34.03187 -32.91079 -29.76930 -29.57474 -28.19411 -28.11725 -27.55638 -26.35485 -25.33681 -23.04602 -22.44618 -21.50241 -20.47493 -20.08245 -19.25079 -18.77682 -17.82390 -17.58671 -17.03695 -16.91285 -16.90620 -16.62272 -15.82814 -15.67002 -15.45747 -15.40627 -15.03178 -14.86309 -14.59996 -14.41777 -14.40431 -13.69627 -13.58720 -13.52754 -13.44015 -13.04885 -13.00494 -12.86609 -12.75851 -12.67655 -12.48466 -12.31109 -12.27603 -12.25530 -11.96819 -11.93010 -11.85233 -11.76838 -11.73023 -11.54872 -11.43543 -11.06218 -10.96302 -10.40950 -10.15091 -9.47861 -8.33305 -7.76735 -5.35980 1.30102 1.49826 1.52180 1.58952 1.69262 2.22103 2.25779 2.54957 3.00180 3.39034 3.56437 3.61679 3.78428 3.80687 4.18252 4.24086 4.25515 4.32348 4.48618 4.50884 4.56841 4.64625 4.65882 4.68836 4.73562 4.77401 4.78028 4.86554 4.89912 4.91679 4.99866 5.06707 5.07036 5.14632 5.17133 5.21522 5.36118 5.39147 5.43647 5.43959 5.57465 5.60366 5.77167 5.80954 5.84483 5.87001 6.11071 6.55662 7.04357 7.10246 7.27290 7.62419 7.91515 8.49606 9.26134 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.002571 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.340306 B =10889.572952 C =11440.286328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.150 3.850 3 H 0.016 0.984 4 C 0.109 3.891 5 N -0.616 5.616 6 C 0.702 3.298 7 O -0.636 6.636 8 N -0.733 5.733 9 C 0.151 3.849 10 C -0.053 4.053 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.105 4.105 14 C 0.485 3.515 15 O -0.533 6.533 16 O -0.517 6.517 17 C 0.123 3.877 18 C 0.183 3.817 19 H 0.071 0.929 20 C -0.116 4.116 21 N -0.594 5.594 22 C -0.252 4.252 23 H 0.070 0.930 24 C -0.038 4.038 25 N -0.923 5.923 26 Si 0.958 3.042 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.269 1.269 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.403 0.597 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.426 0.574 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.045 0.955 50 H 0.030 0.970 51 H 0.022 0.978 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 6.156 -23.482 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.043 3.957 3 H 0.033 0.967 4 C -0.016 4.016 5 N -0.352 5.352 6 C 0.404 3.596 7 O -0.519 6.519 8 N -0.392 5.392 9 C 0.027 3.973 10 C -0.053 4.053 11 C -0.210 4.210 12 C -0.212 4.212 13 C -0.143 4.143 14 C 0.330 3.670 15 O -0.424 6.424 16 O -0.331 6.331 17 C -0.002 4.002 18 C 0.076 3.924 19 H 0.089 0.911 20 C -0.175 4.175 21 N -0.318 5.318 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.235 4.235 25 N -0.568 5.568 26 Si 0.787 3.213 27 H -0.217 1.217 28 H -0.228 1.228 29 H -0.194 1.194 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.288 0.712 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.041 0.959 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.433 5.829 -22.968 23.821 hybrid contribution -1.116 0.136 0.972 1.486 sum 1.317 5.965 -21.996 22.828 Atomic orbital electron populations 1.21668 0.93542 1.01796 1.01358 1.20968 0.94621 0.93107 0.86954 0.96662 1.22271 0.79473 1.01012 0.98814 1.47140 1.06894 1.59888 1.21234 1.15985 0.84424 0.78960 0.80280 1.90830 1.16599 1.64960 1.79482 1.45158 1.11056 1.56293 1.26727 1.21214 0.90799 0.96900 0.88437 1.20476 0.95308 0.95849 0.93674 1.22101 0.99210 0.98657 1.01030 1.22111 1.00298 0.97825 1.00946 1.21393 0.98287 1.01412 0.93174 1.23502 0.86312 0.75928 0.81301 1.90635 1.17184 1.59181 1.75382 1.84509 1.46040 1.64852 1.37703 1.22108 0.98713 0.94698 0.84676 1.20637 0.83532 0.94288 0.93938 0.91108 1.21730 0.97496 0.99206 0.99098 1.44203 1.01572 1.64963 1.21033 1.19304 0.99981 1.33273 0.85695 0.91207 1.26017 0.98318 0.99528 0.99625 1.70075 1.22403 1.48829 1.15452 0.85427 0.79776 0.77077 0.79004 1.21664 1.22785 1.19395 0.92707 0.93889 0.90293 0.88694 0.91116 0.75690 0.92097 0.91388 0.92776 0.90609 0.92101 0.92606 0.90519 0.92932 0.85690 0.85328 0.71214 0.92582 0.91026 0.93638 0.95135 0.95939 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.05 71.98 0.58 -3.50 16 2 C 0.15 5.62 3.22 45.02 0.15 5.76 16 3 H 0.02 0.63 7.41 -2.38 -0.02 0.62 16 4 C 0.11 3.33 5.90 86.42 0.51 3.84 16 5 N -0.62 -21.96 2.58 -835.16 -2.16 -24.11 16 6 C 0.70 24.40 8.30 179.05 1.49 25.88 16 7 O -0.64 -26.66 15.77 -3.98 -0.06 -26.72 16 8 N -0.73 -18.43 4.87 -478.52 -2.33 -20.76 16 9 C 0.15 3.04 4.57 86.38 0.39 3.43 16 10 C -0.05 -0.79 0.53 -52.18 -0.03 -0.82 16 11 C -0.15 -2.38 8.00 71.98 0.58 -1.80 16 12 C -0.15 -2.65 8.00 71.98 0.58 -2.07 16 13 C -0.10 -1.11 4.88 29.85 0.15 -0.96 16 14 C 0.49 6.18 7.74 71.24 0.55 6.74 16 15 O -0.53 -9.73 12.11 21.97 0.27 -9.47 16 16 O -0.52 -4.52 13.42 -51.38 -0.69 -5.21 16 17 C 0.12 5.04 5.99 86.56 0.52 5.56 16 18 C 0.18 8.58 2.33 45.17 0.11 8.69 16 19 H 0.07 3.82 6.26 -2.38 -0.01 3.81 16 20 C -0.12 -5.44 8.93 71.98 0.64 -4.80 16 21 N -0.59 -27.57 2.66 -649.88 -1.73 -29.30 16 22 C -0.25 -12.76 8.32 84.03 0.70 -12.06 16 23 H 0.07 3.42 6.48 -2.92 -0.02 3.40 16 24 C -0.04 -2.04 5.22 84.86 0.44 -1.59 16 25 N -0.92 -51.86 9.75 21.65 0.21 -51.65 16 26 Si 0.96 43.36 29.55 68.60 2.03 45.39 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 29 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 30 H 0.05 1.78 7.30 -2.39 -0.02 1.76 16 31 H 0.04 1.58 7.75 -2.38 -0.02 1.56 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 2.20 5.55 -2.39 -0.01 2.19 16 34 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 35 H 0.40 8.67 3.61 -92.71 -0.33 8.33 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 0.87 6.86 -2.39 -0.02 0.85 16 39 H 0.08 1.33 5.52 -2.38 -0.01 1.31 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.44 5.52 -2.38 -0.01 1.43 16 43 H 0.05 0.95 6.86 -2.39 -0.02 0.93 16 44 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.43 0.52 9.10 -74.05 -0.67 -0.16 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.07 3.04 7.00 -2.39 -0.02 3.03 16 49 H 0.04 2.38 6.97 -2.39 -0.02 2.36 16 50 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.02 0.99 7.02 -2.39 -0.02 0.98 16 52 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -69.71 390.96 2.82 -66.89 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.06 Total: 22.65 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 7.35 Total: 32.30 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -6.01 Total: -125.83 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.49 Total: -41.40 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.71 2.82 -66.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604775975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.926 kcal (2) G-P(sol) polarization free energy of solvation -69.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds