Wall clock time and date at job start Wed Apr 1 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.78876 * 2 1 4 4 C 1.53237 * 109.62949 * 239.51536 * 2 1 3 5 5 N 1.46903 * 109.34218 * 186.45943 * 4 2 1 6 6 C 1.46895 * 111.00274 * 187.25097 * 5 4 2 7 7 C 1.53000 * 109.47190 * 189.99927 * 6 5 4 8 8 C 1.50704 * 109.47029 * 180.02562 * 7 6 5 9 9 O 1.20826 * 120.00172 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99983 * 180.02562 * 8 7 6 11 11 C 1.46901 * 111.26685 * 63.10378 * 5 4 2 12 12 C 1.53695 * 109.25874 * 296.75964 * 11 5 4 13 13 N 1.47076 * 108.27619 * 54.08335 * 12 11 5 14 14 C 1.34769 * 120.88469 * 128.75754 * 13 12 11 15 15 O 1.21592 * 120.00496 * 185.10905 * 14 13 12 16 16 N 1.34786 * 119.99827 * 5.11187 * 14 13 12 17 17 C 1.46497 * 119.99860 * 175.03168 * 16 14 13 18 18 C 1.52999 * 109.46869 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47208 * 60.00001 * 18 17 16 20 20 C 1.52997 * 109.47172 * 299.99858 * 18 17 16 21 21 C 1.50709 * 109.46986 * 179.97438 * 18 17 16 22 22 H 1.07993 * 120.00084 * 359.97438 * 21 18 17 23 23 C 1.37877 * 119.99502 * 180.02562 * 21 18 17 24 24 N 1.31508 * 120.00583 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 119.99634 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.46851 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47075 * 119.99585 * 25 23 21 28 28 H 1.48494 * 109.47186 * 240.00187 * 25 23 21 29 29 H 1.08997 * 109.46849 * 304.86363 * 1 2 3 30 30 H 1.09003 * 109.46942 * 64.86423 * 1 2 3 31 31 H 1.08996 * 109.46831 * 184.86339 * 1 2 3 32 32 H 1.09004 * 109.49599 * 306.41892 * 4 2 1 33 33 H 1.09004 * 109.49565 * 66.47805 * 4 2 1 34 34 H 1.09000 * 109.47399 * 310.00697 * 6 5 4 35 35 H 1.09003 * 109.47024 * 70.00188 * 6 5 4 36 36 H 1.08999 * 109.47212 * 300.00266 * 7 6 5 37 37 H 1.09004 * 109.47108 * 60.00719 * 7 6 5 38 38 H 0.96699 * 117.00425 * 180.02562 * 10 8 7 39 39 H 1.09008 * 109.49197 * 56.85566 * 11 5 4 40 40 H 1.08997 * 109.49298 * 176.93451 * 11 5 4 41 41 H 1.09003 * 109.79781 * 294.41820 * 12 11 5 42 42 H 1.09003 * 109.70380 * 173.68809 * 12 11 5 43 43 H 0.96996 * 119.99823 * 355.02263 * 16 14 13 44 44 H 1.09002 * 109.47584 * 59.99504 * 17 16 14 45 45 H 1.09002 * 109.47263 * 299.99391 * 17 16 14 46 46 H 1.08994 * 109.47453 * 179.97438 * 19 18 17 47 47 H 1.09005 * 109.46978 * 59.99623 * 19 18 17 48 48 H 1.08995 * 109.46875 * 300.00370 * 19 18 17 49 49 H 1.09004 * 109.46732 * 179.97438 * 20 18 17 50 50 H 1.08999 * 109.47116 * 299.99435 * 20 18 17 51 51 H 1.08991 * 109.47057 * 60.00148 * 20 18 17 52 52 H 0.97004 * 120.00223 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5055 -0.8643 -1.1609 6 6 4.0569 -1.4061 -2.4100 7 6 5.5305 -1.7625 -2.2047 8 6 6.0963 -2.3177 -3.4864 9 8 5.3932 -2.4177 -4.4639 10 8 7.3814 -2.7012 -3.5421 11 6 3.9016 -1.6871 -0.0101 12 6 3.4638 -0.9886 1.2871 13 7 2.0241 -0.7029 1.1938 14 6 1.1807 -1.0704 2.1787 15 8 -0.0172 -0.9102 2.0447 16 7 1.6651 -1.6154 3.3123 17 6 0.7611 -1.9143 4.4257 18 6 1.5588 -2.5225 5.5810 19 6 2.6258 -1.5281 6.0432 20 6 2.2335 -3.8128 5.1113 21 6 0.6290 -2.8295 6.7266 22 1 -0.4253 -2.6121 6.6396 23 6 1.1246 -3.3868 7.8862 24 7 2.4086 -3.6502 7.9928 25 14 -0.0278 -3.7667 9.3066 26 1 -1.4129 -3.3787 8.9375 27 1 0.0157 -5.2210 9.6040 28 1 0.3975 -3.0029 10.5070 29 1 -0.3633 0.5874 0.8432 30 1 -0.3633 0.4365 -0.9304 31 1 -0.3633 -1.0239 0.0871 32 1 1.5924 -1.7226 -1.2962 33 1 1.7807 -0.1640 -2.1358 34 1 3.5027 -2.3008 -2.6939 35 1 3.9702 -0.6595 -3.1994 36 1 6.0846 -0.8678 -1.9209 37 1 5.6172 -2.5093 -1.4154 38 1 7.6992 -3.0508 -4.3859 39 1 3.4233 -2.6641 -0.0797 40 1 4.9845 -1.8112 -0.0073 41 1 4.0151 -0.0561 1.4085 42 1 3.6530 -1.6425 2.1384 43 1 2.6121 -1.8097 3.3908 44 1 0.0011 -2.6230 4.0966 45 1 0.2802 -0.9951 4.7601 46 1 3.1938 -1.9612 6.8665 47 1 2.1451 -0.6088 6.3778 48 1 3.2983 -1.3057 5.2147 49 1 2.8021 -4.2458 5.9343 50 1 1.4733 -4.5213 4.7821 51 1 2.9060 -3.5904 4.2829 52 1 2.7572 -4.0427 8.8086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604789460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:45 Heat of formation + Delta-G solvation = -94.074357 kcal Electronic energy + Delta-G solvation = -31187.967609 eV Core-core repulsion = 26995.500069 eV Total energy + Delta-G solvation = -4192.467540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82979 -40.40207 -38.45591 -36.70847 -36.47016 -35.00401 -33.91186 -32.28898 -31.50524 -30.63028 -28.35112 -26.17464 -25.72998 -25.56498 -24.77449 -24.17311 -22.68540 -21.55511 -20.59718 -19.44706 -18.76662 -18.60354 -17.66966 -17.16316 -16.67563 -16.00814 -15.81431 -15.63402 -15.29209 -15.06058 -14.93844 -14.62675 -14.33371 -14.11992 -13.53201 -13.44722 -13.40323 -12.88681 -12.62944 -12.61016 -12.42495 -12.26142 -12.05914 -11.99329 -11.86964 -11.67386 -11.44072 -11.37301 -11.22257 -11.13907 -11.05950 -10.96691 -10.86963 -10.65311 -10.38404 -10.18986 -9.63029 -9.33535 -8.95265 -8.84045 -8.77118 -8.50632 -8.39375 -8.09961 -6.02329 -4.11898 1.75217 2.48870 2.90019 3.27143 3.35838 3.40859 3.55098 3.66206 4.20539 4.25760 4.42077 4.48210 4.67117 4.76459 4.80859 4.96753 5.03401 5.06877 5.12330 5.24702 5.25228 5.37578 5.45243 5.47969 5.55541 5.62602 5.77111 5.86699 6.04426 6.18848 6.29232 6.37764 6.46818 6.50851 6.59400 6.62021 6.78589 6.81507 6.86177 6.93187 7.03231 7.13699 7.29667 7.39767 7.42925 7.55727 7.70043 8.01030 8.12573 8.38133 8.44672 8.88341 9.06719 9.53914 10.99168 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002331 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.661142 B =12010.601956 C =13298.532264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.169 3.831 3 H 0.074 0.926 4 C 0.046 3.954 5 N -0.536 5.536 6 C 0.067 3.933 7 C -0.121 4.121 8 C 0.482 3.518 9 O -0.517 6.517 10 O -0.517 6.517 11 C 0.029 3.971 12 C 0.118 3.882 13 N -0.636 5.636 14 C 0.701 3.299 15 O -0.589 6.589 16 N -0.735 5.735 17 C 0.150 3.850 18 C 0.056 3.944 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.503 4.503 22 H 0.058 0.942 23 C 0.065 3.935 24 N -0.886 5.886 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.411 0.589 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.085 0.915 47 H 0.026 0.974 48 H 0.004 0.996 49 H 0.085 0.915 50 H 0.026 0.974 51 H 0.003 0.997 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.886 4.655 -20.585 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.065 3.935 3 H 0.092 0.908 4 C -0.083 4.083 5 N -0.260 5.260 6 C -0.061 4.061 7 C -0.158 4.158 8 C 0.324 3.676 9 O -0.405 6.405 10 O -0.329 6.329 11 C -0.100 4.100 12 C -0.007 4.007 13 N -0.375 5.375 14 C 0.403 3.597 15 O -0.469 6.469 16 N -0.391 5.391 17 C 0.027 3.973 18 C 0.055 3.945 19 C -0.187 4.187 20 C -0.186 4.186 21 C -0.542 4.542 22 H 0.076 0.924 23 C -0.136 4.136 24 N -0.525 5.525 25 Si 0.721 3.279 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.270 0.730 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.228 0.772 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.046 0.954 48 H 0.023 0.977 49 H 0.104 0.896 50 H 0.045 0.955 51 H 0.022 0.978 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.960 5.288 -20.317 22.826 hybrid contribution -0.038 -1.447 0.115 1.452 sum 8.922 3.841 -20.202 22.416 Atomic orbital electron populations 1.22146 0.92078 1.04343 1.00553 1.21094 0.95585 0.94753 0.82067 0.90824 1.22640 0.86244 1.00343 0.99061 1.62029 1.11387 1.50258 1.02367 1.21897 0.91823 0.99846 0.92537 1.21541 0.97238 1.03837 0.93211 1.23438 0.79461 0.74061 0.90662 1.90748 1.60021 1.51586 1.38148 1.84536 1.28921 1.75720 1.43732 1.22788 1.01259 0.95098 0.90838 1.21756 0.81605 1.00549 0.96751 1.47392 1.06877 1.62749 1.20496 1.16041 0.84962 0.78599 0.80105 1.90923 1.13597 1.61971 1.80367 1.45779 1.12398 1.66056 1.14893 1.21564 0.91837 0.99073 0.84813 1.18366 0.93259 0.91925 0.90960 1.21815 0.98572 0.98192 1.00109 1.21810 0.98825 0.99042 0.98964 1.21023 0.94100 1.40804 0.98244 0.92365 1.24879 0.95081 0.95305 0.98298 1.69809 1.11915 1.43721 1.27083 0.86523 0.81251 0.77884 0.82278 1.19752 1.21101 1.21078 0.90217 0.94321 0.91073 0.93957 0.89537 0.93652 0.89388 0.86373 0.87079 0.72972 0.93881 0.89000 0.90586 0.89770 0.77214 0.92989 0.93055 0.89642 0.95442 0.97672 0.89642 0.95475 0.97764 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 7.61 37.16 0.28 -1.50 16 2 C 0.17 2.02 3.65 -67.49 -0.25 1.77 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.05 0.45 4.87 -3.70 -0.02 0.44 16 5 N -0.54 -4.67 4.78 -234.02 -1.12 -5.79 16 6 C 0.07 0.51 4.56 -3.83 -0.02 0.50 16 7 C -0.12 -0.71 5.06 -27.88 -0.14 -0.85 16 8 C 0.48 3.57 8.33 36.01 0.30 3.87 16 9 O -0.52 -5.54 16.74 -18.75 -0.31 -5.86 16 10 O -0.52 -2.83 13.42 -39.25 -0.53 -3.35 16 11 C 0.03 0.25 5.06 -3.46 -0.02 0.23 16 12 C 0.12 1.23 6.57 -3.37 -0.02 1.21 16 13 N -0.64 -8.64 3.00 -170.33 -0.51 -9.15 16 14 C 0.70 12.33 8.22 -86.92 -0.71 11.62 16 15 O -0.59 -12.05 11.85 5.28 0.06 -11.99 16 16 N -0.73 -13.15 4.87 -65.22 -0.32 -13.47 16 17 C 0.15 3.19 4.51 -4.04 -0.02 3.18 16 18 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 19 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 20 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 21 C -0.50 -13.09 8.01 -34.44 -0.28 -13.36 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 23 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 24 N -0.89 -23.40 9.35 55.43 0.52 -22.88 16 25 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.08 1.26 6.70 -51.93 -0.35 0.91 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.12 6.85 -51.93 -0.36 0.76 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 34 H 0.05 0.40 8.04 -51.93 -0.42 -0.01 16 35 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.55 6.18 -51.93 -0.32 0.23 16 38 H 0.41 0.66 9.10 45.56 0.41 1.08 16 39 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.09 0.57 5.73 -51.93 -0.30 0.27 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.89 5.74 -51.93 -0.30 0.59 16 43 H 0.39 6.34 3.70 -40.82 -0.15 6.18 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 49 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 50 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 52 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -31.23 394.71 -9.46 -40.69 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.73 Total: 5.46 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.46 Total: 4.76 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -1.43 Total: -51.29 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.78 Total: -21.20 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.23 -9.46 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604789460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.384 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds