Wall clock time and date at job start Wed Apr 1 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.78876 * 2 1 4 4 C 1.53237 * 109.62949 * 239.51536 * 2 1 3 5 5 N 1.46903 * 109.34218 * 186.45943 * 4 2 1 6 6 C 1.46895 * 111.00274 * 187.25097 * 5 4 2 7 7 C 1.53000 * 109.47190 * 189.99927 * 6 5 4 8 8 C 1.50704 * 109.47029 * 180.02562 * 7 6 5 9 9 O 1.20826 * 120.00172 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99983 * 180.02562 * 8 7 6 11 11 C 1.46901 * 111.26685 * 63.10378 * 5 4 2 12 12 C 1.53695 * 109.25874 * 296.75964 * 11 5 4 13 13 N 1.47076 * 108.27619 * 54.08335 * 12 11 5 14 14 C 1.34769 * 120.88469 * 128.75754 * 13 12 11 15 15 O 1.21592 * 120.00496 * 185.10905 * 14 13 12 16 16 N 1.34786 * 119.99827 * 5.11187 * 14 13 12 17 17 C 1.46497 * 119.99860 * 175.03168 * 16 14 13 18 18 C 1.52999 * 109.46869 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47208 * 60.00001 * 18 17 16 20 20 C 1.52997 * 109.47172 * 299.99858 * 18 17 16 21 21 C 1.50709 * 109.46986 * 179.97438 * 18 17 16 22 22 H 1.07993 * 120.00084 * 359.97438 * 21 18 17 23 23 C 1.37877 * 119.99502 * 180.02562 * 21 18 17 24 24 N 1.31508 * 120.00583 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 119.99634 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.46851 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47075 * 119.99585 * 25 23 21 28 28 H 1.48494 * 109.47186 * 240.00187 * 25 23 21 29 29 H 1.08997 * 109.46849 * 304.86363 * 1 2 3 30 30 H 1.09003 * 109.46942 * 64.86423 * 1 2 3 31 31 H 1.08996 * 109.46831 * 184.86339 * 1 2 3 32 32 H 1.09004 * 109.49599 * 306.41892 * 4 2 1 33 33 H 1.09004 * 109.49565 * 66.47805 * 4 2 1 34 34 H 1.09000 * 109.47399 * 310.00697 * 6 5 4 35 35 H 1.09003 * 109.47024 * 70.00188 * 6 5 4 36 36 H 1.08999 * 109.47212 * 300.00266 * 7 6 5 37 37 H 1.09004 * 109.47108 * 60.00719 * 7 6 5 38 38 H 0.96699 * 117.00425 * 180.02562 * 10 8 7 39 39 H 1.09008 * 109.49197 * 56.85566 * 11 5 4 40 40 H 1.08997 * 109.49298 * 176.93451 * 11 5 4 41 41 H 1.09003 * 109.79781 * 294.41820 * 12 11 5 42 42 H 1.09003 * 109.70380 * 173.68809 * 12 11 5 43 43 H 0.96996 * 119.99823 * 355.02263 * 16 14 13 44 44 H 1.09002 * 109.47584 * 59.99504 * 17 16 14 45 45 H 1.09002 * 109.47263 * 299.99391 * 17 16 14 46 46 H 1.08994 * 109.47453 * 179.97438 * 19 18 17 47 47 H 1.09005 * 109.46978 * 59.99623 * 19 18 17 48 48 H 1.08995 * 109.46875 * 300.00370 * 19 18 17 49 49 H 1.09004 * 109.46732 * 179.97438 * 20 18 17 50 50 H 1.08999 * 109.47116 * 299.99435 * 20 18 17 51 51 H 1.08991 * 109.47057 * 60.00148 * 20 18 17 52 52 H 0.97004 * 120.00223 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5055 -0.8643 -1.1609 6 6 4.0569 -1.4061 -2.4100 7 6 5.5305 -1.7625 -2.2047 8 6 6.0963 -2.3177 -3.4864 9 8 5.3932 -2.4177 -4.4639 10 8 7.3814 -2.7012 -3.5421 11 6 3.9016 -1.6871 -0.0101 12 6 3.4638 -0.9886 1.2871 13 7 2.0241 -0.7029 1.1938 14 6 1.1807 -1.0704 2.1787 15 8 -0.0172 -0.9102 2.0447 16 7 1.6651 -1.6154 3.3123 17 6 0.7611 -1.9143 4.4257 18 6 1.5588 -2.5225 5.5810 19 6 2.6258 -1.5281 6.0432 20 6 2.2335 -3.8128 5.1113 21 6 0.6290 -2.8295 6.7266 22 1 -0.4253 -2.6121 6.6396 23 6 1.1246 -3.3868 7.8862 24 7 2.4086 -3.6502 7.9928 25 14 -0.0278 -3.7667 9.3066 26 1 -1.4129 -3.3787 8.9375 27 1 0.0157 -5.2210 9.6040 28 1 0.3975 -3.0029 10.5070 29 1 -0.3633 0.5874 0.8432 30 1 -0.3633 0.4365 -0.9304 31 1 -0.3633 -1.0239 0.0871 32 1 1.5924 -1.7226 -1.2962 33 1 1.7807 -0.1640 -2.1358 34 1 3.5027 -2.3008 -2.6939 35 1 3.9702 -0.6595 -3.1994 36 1 6.0846 -0.8678 -1.9209 37 1 5.6172 -2.5093 -1.4154 38 1 7.6992 -3.0508 -4.3859 39 1 3.4233 -2.6641 -0.0797 40 1 4.9845 -1.8112 -0.0073 41 1 4.0151 -0.0561 1.4085 42 1 3.6530 -1.6425 2.1384 43 1 2.6121 -1.8097 3.3908 44 1 0.0011 -2.6230 4.0966 45 1 0.2802 -0.9951 4.7601 46 1 3.1938 -1.9612 6.8665 47 1 2.1451 -0.6088 6.3778 48 1 3.2983 -1.3057 5.2147 49 1 2.8021 -4.2458 5.9343 50 1 1.4733 -4.5213 4.7821 51 1 2.9060 -3.5904 4.2829 52 1 2.7572 -4.0427 8.8086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604789460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:44 Heat of formation + Delta-G solvation = -115.602510 kcal Electronic energy + Delta-G solvation = -31188.901140 eV Core-core repulsion = 26995.500069 eV Total energy + Delta-G solvation = -4193.401071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73804 -41.22913 -39.48990 -38.19447 -37.14968 -36.02804 -35.38237 -33.66569 -32.28477 -32.15124 -29.32237 -27.54827 -27.44933 -27.02526 -26.44853 -24.94485 -23.50553 -22.61281 -21.25532 -20.67475 -20.53283 -19.17555 -18.79287 -17.86069 -17.72047 -17.27526 -17.09847 -16.85046 -16.53414 -16.08417 -15.77752 -15.67300 -15.65229 -15.21988 -14.92525 -14.67448 -14.51231 -14.08047 -13.99550 -13.87925 -13.42218 -13.35688 -13.19440 -13.10191 -13.02037 -12.72644 -12.64292 -12.55406 -12.54407 -12.37232 -12.27025 -12.23066 -12.11638 -12.04920 -11.84541 -11.58156 -11.46462 -11.17816 -10.68964 -10.38524 -10.29896 -9.97932 -9.60029 -9.24215 -8.01235 -6.16220 1.22072 1.41809 1.46106 1.55174 1.69997 2.05579 2.23809 2.46688 2.92570 3.06485 3.22470 3.64961 3.81048 3.92158 4.01314 4.14596 4.21307 4.30133 4.36348 4.40915 4.46154 4.55688 4.57116 4.64515 4.72022 4.73423 4.78372 4.84610 4.87850 4.92081 5.00422 5.01551 5.07022 5.12172 5.21244 5.23100 5.37601 5.43251 5.63832 5.67649 5.68951 5.69500 5.73122 5.85244 5.94698 6.08358 6.17121 6.23944 6.45724 6.87988 7.00150 7.09355 7.51333 7.69235 8.97914 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.002331 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.661142 B =12010.601956 C =13298.532264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.167 3.833 3 H 0.088 0.912 4 C 0.053 3.947 5 N -0.531 5.531 6 C 0.071 3.929 7 C -0.116 4.116 8 C 0.487 3.513 9 O -0.557 6.557 10 O -0.514 6.514 11 C 0.031 3.969 12 C 0.111 3.889 13 N -0.630 5.630 14 C 0.696 3.304 15 O -0.624 6.624 16 N -0.729 5.729 17 C 0.169 3.831 18 C 0.052 3.948 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.526 4.526 22 H 0.043 0.957 23 C 0.029 3.971 24 N -0.898 5.898 25 Si 0.944 3.056 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.026 0.974 33 H 0.105 0.895 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.126 0.874 38 H 0.427 0.573 39 H 0.030 0.970 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.401 0.599 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.017 0.983 48 H 0.036 0.964 49 H 0.063 0.937 50 H 0.015 0.985 51 H 0.035 0.965 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 5.189 -21.722 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.063 3.937 3 H 0.106 0.894 4 C -0.076 4.076 5 N -0.255 5.255 6 C -0.057 4.057 7 C -0.153 4.153 8 C 0.331 3.669 9 O -0.449 6.449 10 O -0.327 6.327 11 C -0.097 4.097 12 C -0.012 4.012 13 N -0.369 5.369 14 C 0.397 3.603 15 O -0.506 6.506 16 N -0.387 5.387 17 C 0.045 3.955 18 C 0.051 3.949 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.564 4.564 22 H 0.061 0.939 23 C -0.171 4.171 24 N -0.537 5.537 25 Si 0.771 3.229 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.123 0.877 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.289 0.711 39 H 0.049 0.951 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.240 0.760 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.036 0.964 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.034 0.966 51 H 0.054 0.946 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.265 5.823 -21.487 24.950 hybrid contribution -0.692 -1.597 0.397 1.786 sum 10.573 4.225 -21.090 23.967 Atomic orbital electron populations 1.21945 0.93429 1.02105 1.00713 1.21240 0.94568 0.95623 0.82235 0.89400 1.22529 0.87128 0.99449 0.98500 1.62039 1.10322 1.50265 1.02871 1.21836 0.92935 0.99107 0.91814 1.21544 0.95929 1.05006 0.92816 1.23672 0.79587 0.73157 0.90502 1.90743 1.61035 1.53435 1.39638 1.84501 1.27882 1.75303 1.45035 1.22836 1.03090 0.94030 0.89752 1.22041 0.79513 1.01705 0.97949 1.47476 1.07939 1.61745 1.19702 1.16221 0.84953 0.78489 0.80592 1.90921 1.15417 1.63170 1.81096 1.45488 1.12317 1.66536 1.14372 1.21075 0.91636 0.97487 0.85332 1.18357 0.93211 0.92629 0.90673 1.21645 0.98369 0.97171 1.00398 1.21642 0.98625 0.98156 0.99132 1.21284 0.94028 1.41330 0.99800 0.93886 1.25427 0.96308 0.95335 1.00038 1.69902 1.12613 1.43748 1.27461 0.85729 0.79527 0.77684 0.79984 1.20157 1.20763 1.20673 0.93071 0.91535 0.93951 0.95580 0.87719 0.95137 0.89516 0.84373 0.85657 0.71087 0.95141 0.85701 0.88816 0.89708 0.76026 0.95020 0.94795 0.91822 0.96384 0.94531 0.91788 0.96564 0.94647 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 7.61 71.98 0.55 -2.77 16 2 C 0.17 3.74 3.65 44.96 0.16 3.90 16 3 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.05 0.95 4.87 86.38 0.42 1.37 16 5 N -0.53 -7.71 4.78 -894.30 -4.27 -11.98 16 6 C 0.07 0.92 4.56 86.30 0.39 1.31 16 7 C -0.12 -0.98 5.06 29.85 0.15 -0.83 16 8 C 0.49 6.11 8.33 71.24 0.59 6.70 16 9 O -0.56 -11.28 16.74 21.96 0.37 -10.91 16 10 O -0.51 -4.25 13.42 -51.37 -0.69 -4.94 16 11 C 0.03 0.44 5.06 86.54 0.44 0.88 16 12 C 0.11 2.00 6.57 86.50 0.57 2.57 16 13 N -0.63 -16.26 3.00 -811.06 -2.44 -18.70 16 14 C 0.70 24.36 8.22 179.05 1.47 25.83 16 15 O -0.62 -26.28 11.85 -4.01 -0.05 -26.33 16 16 N -0.73 -25.67 4.87 -478.52 -2.33 -28.00 16 17 C 0.17 7.32 4.51 86.38 0.39 7.71 16 18 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 19 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 20 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 21 C -0.53 -27.82 8.01 25.60 0.21 -27.61 16 22 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 23 C 0.03 1.50 5.15 84.66 0.44 1.94 16 24 N -0.90 -47.41 9.35 21.45 0.20 -47.21 16 25 Si 0.94 42.58 29.54 68.60 2.03 44.61 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 29 H 0.05 1.65 6.70 -2.39 -0.02 1.64 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.37 6.85 -2.39 -0.02 1.35 16 32 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.10 1.51 8.11 -2.38 -0.02 1.49 16 34 H 0.03 0.50 8.04 -2.39 -0.02 0.48 16 35 H 0.09 1.18 8.10 -2.39 -0.02 1.16 16 36 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.13 0.74 6.18 -2.38 -0.01 0.72 16 38 H 0.43 0.42 9.10 -74.06 -0.67 -0.26 16 39 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.13 0.96 5.73 -2.39 -0.01 0.95 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.53 5.74 -2.39 -0.01 1.52 16 43 H 0.40 12.23 3.70 -92.71 -0.34 11.89 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.03 1.56 8.14 -2.39 -0.02 1.55 16 46 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 47 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 49 H 0.06 3.12 6.07 -2.38 -0.01 3.10 16 50 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 52 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 Total: -1.00 -69.21 394.71 -0.34 -69.55 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.08 Total: 19.75 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.91 Total: 14.17 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -8.84 Total: -105.89 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.37 Total: -42.18 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -69.21 -0.34 -69.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604789460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.051 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds