Wall clock time and date at job start Wed Apr 1 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.62397 * 2 1 4 4 C 1.53240 * 109.62757 * 120.58729 * 2 1 3 5 5 N 1.46895 * 109.33710 * 173.53951 * 4 2 1 6 6 C 1.46907 * 111.00286 * 172.74255 * 5 4 2 7 7 C 1.52999 * 109.47195 * 190.34820 * 6 5 4 8 8 C 1.50707 * 109.46521 * 180.02562 * 7 6 5 9 9 O 1.20817 * 120.00216 * 359.97438 * 8 7 6 10 10 O 1.34231 * 119.99483 * 179.97438 * 8 7 6 11 11 C 1.46892 * 111.27316 * 296.89210 * 5 4 2 12 12 C 1.53240 * 109.33847 * 63.10431 * 11 5 4 13 13 N 1.47077 * 108.52184 * 306.17280 * 12 11 5 14 14 C 1.34775 * 120.88432 * 231.16373 * 13 12 11 15 15 O 1.21586 * 120.00513 * 185.72543 * 14 13 12 16 16 N 1.34781 * 120.00060 * 5.72882 * 14 13 12 17 17 C 1.46501 * 120.00000 * 185.11458 * 16 14 13 18 18 C 1.53000 * 109.46985 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47237 * 299.99811 * 18 17 16 20 20 C 1.53004 * 109.46989 * 59.99612 * 18 17 16 21 21 C 1.50697 * 109.47405 * 179.97438 * 18 17 16 22 22 H 1.08000 * 119.99827 * 0.02562 * 21 18 17 23 23 C 1.37872 * 120.00203 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00213 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 120.00135 * 180.02562 * 23 21 18 26 26 H 1.48506 * 109.47075 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47603 * 119.99825 * 25 23 21 28 28 H 1.48505 * 109.47056 * 240.00222 * 25 23 21 29 29 H 1.09003 * 109.47062 * 172.01958 * 1 2 3 30 30 H 1.08991 * 109.47486 * 52.01367 * 1 2 3 31 31 H 1.09005 * 109.47183 * 292.01189 * 1 2 3 32 32 H 1.09003 * 109.49226 * 293.49731 * 4 2 1 33 33 H 1.08992 * 109.49807 * 53.58012 * 4 2 1 34 34 H 1.09007 * 109.46756 * 310.34884 * 6 5 4 35 35 H 1.09000 * 109.46576 * 70.34613 * 6 5 4 36 36 H 1.08999 * 109.47023 * 299.99705 * 7 6 5 37 37 H 1.09000 * 109.47079 * 60.00667 * 7 6 5 38 38 H 0.96698 * 116.99946 * 179.97438 * 10 8 7 39 39 H 1.09008 * 109.49336 * 303.14560 * 11 5 4 40 40 H 1.08997 * 109.51941 * 183.07966 * 11 5 4 41 41 H 1.09007 * 109.62978 * 186.46756 * 12 11 5 42 42 H 1.08997 * 109.79305 * 65.98011 * 12 11 5 43 43 H 0.96994 * 119.99727 * 5.10341 * 16 14 13 44 44 H 1.08999 * 109.46719 * 299.98835 * 17 16 14 45 45 H 1.08996 * 109.47380 * 59.99985 * 17 16 14 46 46 H 1.09004 * 109.47324 * 59.99593 * 19 18 17 47 47 H 1.08999 * 109.47771 * 179.97438 * 19 18 17 48 48 H 1.08996 * 109.47356 * 299.99813 * 19 18 17 49 49 H 1.08998 * 109.47363 * 60.00576 * 20 18 17 50 50 H 1.09005 * 109.46989 * 180.02562 * 20 18 17 51 51 H 1.09000 * 109.47378 * 300.00114 * 20 18 17 52 52 H 0.97005 * 120.00465 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7345 1.2425 5 7 3.5054 -0.8664 1.1593 6 6 4.0569 -1.4104 2.4076 7 6 5.5823 -1.2936 2.3847 8 6 6.1479 -1.8522 3.6651 9 8 5.4071 -2.2975 4.5092 10 8 7.4749 -1.8551 3.8675 11 6 3.9016 -1.6871 0.0072 12 6 3.4629 -0.9918 -1.2860 13 7 2.0241 -0.7008 -1.1950 14 6 1.1807 -1.0661 -2.1808 15 8 0.0138 -0.7272 -2.1393 16 7 1.6309 -1.8072 -3.2126 17 6 0.7442 -2.1099 -4.3388 18 6 1.4961 -2.9586 -5.3661 19 6 2.7162 -2.1859 -5.8711 20 6 1.9539 -4.2639 -4.7122 21 6 0.5839 -3.2705 -6.5244 22 1 -0.4306 -2.9001 -6.5277 23 6 1.0443 -4.0288 -7.5798 24 7 2.2798 -4.4794 -7.5760 25 14 -0.0862 -4.4148 -9.0159 26 1 -1.4152 -3.7956 -8.7800 27 1 0.4991 -3.8700 -10.2672 28 1 -0.2417 -5.8863 -9.1418 29 1 -0.3633 -1.0177 -0.1427 30 1 -0.3634 0.6324 -0.8099 31 1 -0.3634 0.3852 0.9528 32 1 1.7810 -0.1676 2.1354 33 1 1.5924 -1.7248 1.2932 34 1 3.6621 -0.8487 3.2543 35 1 3.7740 -2.4587 2.5032 36 1 5.9770 -1.8553 1.5380 37 1 5.8650 -0.2453 2.2891 38 1 7.7906 -2.2233 4.7040 39 1 3.4233 -2.6643 0.0751 40 1 4.9844 -1.8116 0.0039 41 1 3.6508 -1.6475 -2.1362 42 1 4.0173 -0.0618 -1.4113 43 1 2.5419 -2.1400 -3.2095 44 1 -0.1252 -2.6602 -3.9790 45 1 0.4184 -1.1800 -4.8049 46 1 3.3759 -1.9605 -5.0331 47 1 3.2522 -2.7906 -6.6026 48 1 2.3901 -1.2560 -6.3369 49 1 1.0847 -4.8145 -4.3525 50 1 2.4900 -4.8683 -5.4439 51 1 2.6136 -4.0387 -3.8742 52 1 2.6037 -5.0132 -8.3184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604789461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:48 Heat of formation + Delta-G solvation = -98.318049 kcal Electronic energy + Delta-G solvation = -31163.249547 eV Core-core repulsion = 26970.597987 eV Total energy + Delta-G solvation = -4192.651560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78937 -40.40516 -38.41318 -36.69460 -36.46061 -34.97093 -33.89822 -32.27368 -31.62431 -30.61915 -28.28645 -26.21991 -25.73054 -25.56842 -24.77682 -24.11552 -22.57975 -21.49405 -20.77427 -19.42681 -18.76597 -18.56919 -17.69842 -17.09734 -16.66018 -16.08488 -15.82501 -15.52835 -15.36659 -15.00956 -14.88633 -14.62731 -14.30053 -14.11447 -13.55968 -13.43097 -13.41129 -12.88969 -12.67870 -12.61663 -12.47153 -12.22338 -12.02301 -11.98250 -11.79018 -11.67645 -11.45514 -11.38076 -11.21748 -11.12311 -11.03891 -11.00688 -10.87164 -10.65256 -10.38496 -10.18988 -9.63124 -9.33827 -9.00829 -8.86021 -8.77405 -8.52177 -8.39506 -8.09592 -6.02319 -4.11898 1.76977 2.49530 2.90476 3.27161 3.35858 3.40882 3.55093 3.67718 4.25231 4.27195 4.42041 4.49896 4.68297 4.77355 4.83966 4.99550 5.05861 5.08200 5.13424 5.24695 5.25327 5.38215 5.46145 5.47898 5.55042 5.62383 5.77588 5.85347 6.06011 6.18773 6.28054 6.37812 6.46077 6.50603 6.59610 6.61959 6.78214 6.81280 6.85368 6.93082 7.03208 7.13797 7.29572 7.39788 7.44416 7.55652 7.70009 8.00904 8.12508 8.38117 8.44738 8.88341 9.06842 9.53917 10.99188 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002314 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.758895 B =12098.962620 C =13336.256183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.169 3.831 3 H 0.074 0.926 4 C 0.046 3.954 5 N -0.537 5.537 6 C 0.066 3.934 7 C -0.113 4.113 8 C 0.481 3.519 9 O -0.518 6.518 10 O -0.518 6.518 11 C 0.034 3.966 12 C 0.118 3.882 13 N -0.636 5.636 14 C 0.702 3.298 15 O -0.589 6.589 16 N -0.735 5.735 17 C 0.150 3.850 18 C 0.056 3.944 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.503 4.503 22 H 0.058 0.942 23 C 0.065 3.935 24 N -0.887 5.887 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.411 0.589 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.391 0.609 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.004 0.996 47 H 0.085 0.915 48 H 0.027 0.973 49 H 0.026 0.974 50 H 0.085 0.915 51 H 0.003 0.997 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 6.904 20.416 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.065 3.935 3 H 0.092 0.908 4 C -0.082 4.082 5 N -0.261 5.261 6 C -0.062 4.062 7 C -0.151 4.151 8 C 0.323 3.677 9 O -0.406 6.406 10 O -0.330 6.330 11 C -0.095 4.095 12 C -0.006 4.006 13 N -0.375 5.375 14 C 0.404 3.596 15 O -0.468 6.468 16 N -0.391 5.391 17 C 0.027 3.973 18 C 0.055 3.945 19 C -0.187 4.187 20 C -0.187 4.187 21 C -0.542 4.542 22 H 0.076 0.924 23 C -0.136 4.136 24 N -0.525 5.525 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.270 0.730 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.228 0.772 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.023 0.977 47 H 0.104 0.896 48 H 0.046 0.954 49 H 0.045 0.955 50 H 0.104 0.896 51 H 0.022 0.978 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.135 7.546 20.060 23.298 hybrid contribution -0.027 -1.560 -0.082 1.562 sum 9.107 5.986 19.978 22.757 Atomic orbital electron populations 1.22133 0.92209 1.04370 1.00645 1.21076 0.95512 0.94889 0.82004 0.90777 1.22631 0.86288 1.00296 0.99028 1.61869 1.11294 1.50547 1.02432 1.21851 0.92032 0.99589 0.92718 1.21351 0.96318 1.04469 0.92922 1.23481 0.79955 0.75184 0.89041 1.90745 1.60055 1.43757 1.46033 1.84540 1.25376 1.77436 1.45600 1.22623 1.01109 0.95038 0.90725 1.21652 0.81629 1.00597 0.96747 1.47405 1.06863 1.62713 1.20558 1.16018 0.84581 0.79307 0.79740 1.90906 1.16131 1.61277 1.78533 1.45770 1.17198 1.54991 1.21190 1.21565 0.92157 0.98948 0.84619 1.18365 0.93332 0.91079 0.91743 1.21813 0.98228 0.99278 0.99346 1.21814 0.98759 1.00123 0.97956 1.21020 0.98023 1.32326 1.02787 0.92360 1.24879 0.95095 0.95518 0.98083 1.69811 1.15108 1.36056 1.31562 0.86522 0.81079 0.77974 0.82346 1.19747 1.21078 1.21103 0.91643 0.89726 0.94134 0.89526 0.93983 0.89565 0.93611 0.87376 0.86469 0.73021 0.93845 0.89362 0.89785 0.90600 0.77205 0.92968 0.93057 0.97713 0.89648 0.95420 0.95474 0.89641 0.97771 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 7.63 37.16 0.28 -1.52 16 2 C 0.17 2.01 3.65 -67.49 -0.25 1.77 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.05 0.45 4.91 -3.70 -0.02 0.43 16 5 N -0.54 -4.64 4.63 -234.32 -1.08 -5.72 16 6 C 0.07 0.51 4.25 -3.82 -0.02 0.49 16 7 C -0.11 -0.67 5.75 -27.88 -0.16 -0.83 16 8 C 0.48 3.56 8.33 36.01 0.30 3.86 16 9 O -0.52 -5.57 16.74 -18.74 -0.31 -5.88 16 10 O -0.52 -2.81 13.42 -39.26 -0.53 -3.34 16 11 C 0.03 0.30 5.46 -3.70 -0.02 0.28 16 12 C 0.12 1.25 6.61 -3.60 -0.02 1.22 16 13 N -0.64 -8.66 3.01 -170.61 -0.51 -9.17 16 14 C 0.70 12.37 8.08 -86.92 -0.70 11.67 16 15 O -0.59 -12.08 12.07 5.29 0.06 -12.02 16 16 N -0.73 -13.19 4.86 -65.23 -0.32 -13.51 16 17 C 0.15 3.20 4.51 -4.04 -0.02 3.18 16 18 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 19 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 20 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 21 C -0.50 -13.10 8.01 -34.44 -0.28 -13.38 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 23 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 24 N -0.89 -23.44 9.35 55.43 0.52 -22.92 16 25 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.06 1.03 6.96 -51.93 -0.36 0.66 16 30 H 0.08 1.33 6.60 -51.93 -0.34 0.99 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.71 7.99 -51.93 -0.41 0.30 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.11 0.53 6.41 -51.93 -0.33 0.19 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.41 0.65 9.10 45.56 0.41 1.07 16 39 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.09 0.57 6.18 -51.93 -0.32 0.25 16 41 H 0.08 0.90 5.63 -51.92 -0.29 0.61 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.39 6.37 3.69 -40.82 -0.15 6.22 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 47 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 48 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 51 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 52 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -31.22 395.83 -9.44 -40.66 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.74 Total: 5.46 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.47 Total: 4.84 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -1.40 Total: -51.32 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.78 Total: -21.24 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.22 -9.44 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604789461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.658 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds