Wall clock time and date at job start Wed Apr 1 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.62397 * 2 1 4 4 C 1.53240 * 109.62757 * 120.58729 * 2 1 3 5 5 N 1.46895 * 109.33710 * 173.53951 * 4 2 1 6 6 C 1.46907 * 111.00286 * 172.74255 * 5 4 2 7 7 C 1.52999 * 109.47195 * 190.34820 * 6 5 4 8 8 C 1.50707 * 109.46521 * 180.02562 * 7 6 5 9 9 O 1.20817 * 120.00216 * 359.97438 * 8 7 6 10 10 O 1.34231 * 119.99483 * 179.97438 * 8 7 6 11 11 C 1.46892 * 111.27316 * 296.89210 * 5 4 2 12 12 C 1.53240 * 109.33847 * 63.10431 * 11 5 4 13 13 N 1.47077 * 108.52184 * 306.17280 * 12 11 5 14 14 C 1.34775 * 120.88432 * 231.16373 * 13 12 11 15 15 O 1.21586 * 120.00513 * 185.72543 * 14 13 12 16 16 N 1.34781 * 120.00060 * 5.72882 * 14 13 12 17 17 C 1.46501 * 120.00000 * 185.11458 * 16 14 13 18 18 C 1.53000 * 109.46985 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47237 * 299.99811 * 18 17 16 20 20 C 1.53004 * 109.46989 * 59.99612 * 18 17 16 21 21 C 1.50697 * 109.47405 * 179.97438 * 18 17 16 22 22 H 1.08000 * 119.99827 * 0.02562 * 21 18 17 23 23 C 1.37872 * 120.00203 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00213 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 120.00135 * 180.02562 * 23 21 18 26 26 H 1.48506 * 109.47075 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47603 * 119.99825 * 25 23 21 28 28 H 1.48505 * 109.47056 * 240.00222 * 25 23 21 29 29 H 1.09003 * 109.47062 * 172.01958 * 1 2 3 30 30 H 1.08991 * 109.47486 * 52.01367 * 1 2 3 31 31 H 1.09005 * 109.47183 * 292.01189 * 1 2 3 32 32 H 1.09003 * 109.49226 * 293.49731 * 4 2 1 33 33 H 1.08992 * 109.49807 * 53.58012 * 4 2 1 34 34 H 1.09007 * 109.46756 * 310.34884 * 6 5 4 35 35 H 1.09000 * 109.46576 * 70.34613 * 6 5 4 36 36 H 1.08999 * 109.47023 * 299.99705 * 7 6 5 37 37 H 1.09000 * 109.47079 * 60.00667 * 7 6 5 38 38 H 0.96698 * 116.99946 * 179.97438 * 10 8 7 39 39 H 1.09008 * 109.49336 * 303.14560 * 11 5 4 40 40 H 1.08997 * 109.51941 * 183.07966 * 11 5 4 41 41 H 1.09007 * 109.62978 * 186.46756 * 12 11 5 42 42 H 1.08997 * 109.79305 * 65.98011 * 12 11 5 43 43 H 0.96994 * 119.99727 * 5.10341 * 16 14 13 44 44 H 1.08999 * 109.46719 * 299.98835 * 17 16 14 45 45 H 1.08996 * 109.47380 * 59.99985 * 17 16 14 46 46 H 1.09004 * 109.47324 * 59.99593 * 19 18 17 47 47 H 1.08999 * 109.47771 * 179.97438 * 19 18 17 48 48 H 1.08996 * 109.47356 * 299.99813 * 19 18 17 49 49 H 1.08998 * 109.47363 * 60.00576 * 20 18 17 50 50 H 1.09005 * 109.46989 * 180.02562 * 20 18 17 51 51 H 1.09000 * 109.47378 * 300.00114 * 20 18 17 52 52 H 0.97005 * 120.00465 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7345 1.2425 5 7 3.5054 -0.8664 1.1593 6 6 4.0569 -1.4104 2.4076 7 6 5.5823 -1.2936 2.3847 8 6 6.1479 -1.8522 3.6651 9 8 5.4071 -2.2975 4.5092 10 8 7.4749 -1.8551 3.8675 11 6 3.9016 -1.6871 0.0072 12 6 3.4629 -0.9918 -1.2860 13 7 2.0241 -0.7008 -1.1950 14 6 1.1807 -1.0661 -2.1808 15 8 0.0138 -0.7272 -2.1393 16 7 1.6309 -1.8072 -3.2126 17 6 0.7442 -2.1099 -4.3388 18 6 1.4961 -2.9586 -5.3661 19 6 2.7162 -2.1859 -5.8711 20 6 1.9539 -4.2639 -4.7122 21 6 0.5839 -3.2705 -6.5244 22 1 -0.4306 -2.9001 -6.5277 23 6 1.0443 -4.0288 -7.5798 24 7 2.2798 -4.4794 -7.5760 25 14 -0.0862 -4.4148 -9.0159 26 1 -1.4152 -3.7956 -8.7800 27 1 0.4991 -3.8700 -10.2672 28 1 -0.2417 -5.8863 -9.1418 29 1 -0.3633 -1.0177 -0.1427 30 1 -0.3634 0.6324 -0.8099 31 1 -0.3634 0.3852 0.9528 32 1 1.7810 -0.1676 2.1354 33 1 1.5924 -1.7248 1.2932 34 1 3.6621 -0.8487 3.2543 35 1 3.7740 -2.4587 2.5032 36 1 5.9770 -1.8553 1.5380 37 1 5.8650 -0.2453 2.2891 38 1 7.7906 -2.2233 4.7040 39 1 3.4233 -2.6643 0.0751 40 1 4.9844 -1.8116 0.0039 41 1 3.6508 -1.6475 -2.1362 42 1 4.0173 -0.0618 -1.4113 43 1 2.5419 -2.1400 -3.2095 44 1 -0.1252 -2.6602 -3.9790 45 1 0.4184 -1.1800 -4.8049 46 1 3.3759 -1.9605 -5.0331 47 1 3.2522 -2.7906 -6.6026 48 1 2.3901 -1.2560 -6.3369 49 1 1.0847 -4.8145 -4.3525 50 1 2.4900 -4.8683 -5.4439 51 1 2.6136 -4.0387 -3.8742 52 1 2.6037 -5.0132 -8.3184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604789461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:47 Heat of formation + Delta-G solvation = -119.726789 kcal Electronic energy + Delta-G solvation = -31164.177899 eV Core-core repulsion = 26970.597987 eV Total energy + Delta-G solvation = -4193.579913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72425 -41.20939 -39.46169 -38.18526 -37.13917 -35.98581 -35.37448 -33.65480 -32.37539 -32.17030 -29.25826 -27.55662 -27.46001 -27.06652 -26.45728 -24.87329 -23.44176 -22.54844 -21.37520 -20.68212 -20.53798 -19.14764 -18.82437 -17.81790 -17.68949 -17.31231 -17.11934 -16.80983 -16.52024 -16.14118 -15.73855 -15.64237 -15.60017 -15.24315 -14.91783 -14.68765 -14.47410 -14.08015 -14.02926 -13.91900 -13.43391 -13.34098 -13.19054 -13.09784 -13.00387 -12.67752 -12.62184 -12.55580 -12.52588 -12.38921 -12.30614 -12.23880 -12.12131 -12.07782 -11.77505 -11.61309 -11.47212 -11.18421 -10.69608 -10.39093 -10.35357 -9.99473 -9.62245 -9.25306 -8.01601 -6.16641 1.23967 1.41613 1.45874 1.55011 1.69963 2.05832 2.23556 2.46411 2.94724 3.05139 3.22103 3.71187 3.81605 3.92848 3.99746 4.17116 4.21717 4.30557 4.35966 4.44708 4.46895 4.55258 4.58756 4.65287 4.71556 4.73519 4.78951 4.83646 4.88270 4.94782 5.00297 5.00881 5.06006 5.11472 5.20757 5.23411 5.36252 5.42768 5.65630 5.67488 5.68129 5.69106 5.72560 5.85438 5.94438 6.07809 6.16201 6.23319 6.45179 6.87567 7.01754 7.08775 7.50932 7.68817 8.97583 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016488 B = 0.002314 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.758895 B =12098.962620 C =13336.256183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.167 3.833 3 H 0.089 0.911 4 C 0.053 3.947 5 N -0.530 5.530 6 C 0.070 3.930 7 C -0.107 4.107 8 C 0.487 3.513 9 O -0.558 6.558 10 O -0.514 6.514 11 C 0.037 3.963 12 C 0.112 3.888 13 N -0.631 5.631 14 C 0.696 3.304 15 O -0.624 6.624 16 N -0.730 5.730 17 C 0.169 3.831 18 C 0.052 3.948 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.525 4.525 22 H 0.043 0.957 23 C 0.028 3.972 24 N -0.899 5.899 25 Si 0.944 3.056 26 H -0.276 1.276 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.025 0.975 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.427 0.573 39 H 0.029 0.971 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.401 0.599 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.036 0.964 47 H 0.063 0.937 48 H 0.018 0.982 49 H 0.015 0.985 50 H 0.063 0.937 51 H 0.033 0.967 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 7.650 21.663 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.064 3.936 3 H 0.106 0.894 4 C -0.076 4.076 5 N -0.254 5.254 6 C -0.058 4.058 7 C -0.144 4.144 8 C 0.331 3.669 9 O -0.450 6.450 10 O -0.328 6.328 11 C -0.092 4.092 12 C -0.011 4.011 13 N -0.369 5.369 14 C 0.398 3.602 15 O -0.506 6.506 16 N -0.388 5.388 17 C 0.045 3.955 18 C 0.051 3.949 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.564 4.564 22 H 0.061 0.939 23 C -0.171 4.171 24 N -0.538 5.538 25 Si 0.771 3.229 26 H -0.201 1.201 27 H -0.206 1.206 28 H -0.208 1.208 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.289 0.711 39 H 0.047 0.953 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.239 0.761 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.037 0.963 49 H 0.034 0.966 50 H 0.082 0.918 51 H 0.052 0.948 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.387 8.297 21.345 25.576 hybrid contribution -0.662 -1.762 -0.396 1.923 sum 10.725 6.536 20.950 24.426 Atomic orbital electron populations 1.21942 0.93534 1.01940 1.01032 1.21232 0.94514 0.95769 0.82127 0.89355 1.22532 0.87115 0.99412 0.98520 1.61892 1.10281 1.50419 1.02844 1.21801 0.93424 0.98565 0.92007 1.21340 0.94738 1.05685 0.92665 1.23719 0.80153 0.74159 0.88909 1.90741 1.61027 1.45729 1.47488 1.84505 1.24295 1.77148 1.46809 1.22650 1.02827 0.93934 0.89782 1.21918 0.79587 1.01719 0.97842 1.47491 1.07870 1.61740 1.19797 1.16196 0.84591 0.79151 0.80247 1.90903 1.17925 1.62386 1.79378 1.45484 1.17120 1.55516 1.20641 1.21077 0.91842 0.97457 0.85156 1.18358 0.93367 0.91774 0.91392 1.21641 0.97973 0.98130 0.99816 1.21647 0.98498 0.99186 0.98226 1.21280 0.98021 1.32769 1.04342 0.93851 1.25433 0.96279 0.95534 0.99901 1.69905 1.15787 1.36086 1.31979 0.85721 0.79439 0.77689 0.80026 1.20122 1.20647 1.20797 0.94603 0.92526 0.91265 0.87495 0.95630 0.89701 0.95086 0.85787 0.84710 0.71138 0.95289 0.86235 0.89845 0.88804 0.76053 0.95038 0.94713 0.94543 0.91842 0.96283 0.96605 0.91772 0.94792 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 7.63 71.98 0.55 -2.80 16 2 C 0.17 3.71 3.65 44.96 0.16 3.87 16 3 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 4 C 0.05 0.93 4.91 86.38 0.42 1.35 16 5 N -0.53 -7.60 4.63 -895.25 -4.14 -11.75 16 6 C 0.07 0.90 4.25 86.30 0.37 1.27 16 7 C -0.11 -0.90 5.75 29.85 0.17 -0.73 16 8 C 0.49 6.08 8.33 71.24 0.59 6.67 16 9 O -0.56 -11.32 16.74 21.99 0.37 -10.96 16 10 O -0.51 -4.23 13.42 -51.43 -0.69 -4.92 16 11 C 0.04 0.53 5.46 86.39 0.47 1.00 16 12 C 0.11 2.06 6.61 86.35 0.57 2.63 16 13 N -0.63 -16.33 3.01 -811.95 -2.44 -18.77 16 14 C 0.70 24.49 8.08 179.05 1.45 25.94 16 15 O -0.62 -26.34 12.07 -3.99 -0.05 -26.39 16 16 N -0.73 -25.86 4.86 -478.53 -2.32 -28.18 16 17 C 0.17 7.34 4.51 86.38 0.39 7.73 16 18 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 19 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 20 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 21 C -0.53 -27.85 8.01 25.60 0.21 -27.65 16 22 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 23 C 0.03 1.48 5.15 84.65 0.44 1.92 16 24 N -0.90 -47.56 9.35 21.44 0.20 -47.36 16 25 Si 0.94 42.66 29.54 68.60 2.03 44.69 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 29 H 0.03 1.15 6.96 -2.39 -0.02 1.13 16 30 H 0.06 1.82 6.60 -2.39 -0.02 1.80 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.11 1.47 7.99 -2.39 -0.02 1.45 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 1.14 7.92 -2.38 -0.02 1.12 16 35 H 0.03 0.50 8.08 -2.39 -0.02 0.48 16 36 H 0.12 0.68 6.41 -2.39 -0.02 0.67 16 37 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.43 0.40 9.10 -74.06 -0.67 -0.28 16 39 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.12 1.02 6.18 -2.39 -0.01 1.01 16 41 H 0.08 1.55 5.63 -2.38 -0.01 1.54 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.40 12.37 3.69 -92.71 -0.34 12.03 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.04 1.32 6.86 -2.38 -0.02 1.30 16 47 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 51 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 52 H 0.26 13.22 8.31 -92.70 -0.77 12.45 16 Total: -1.00 -69.18 395.83 -0.21 -69.39 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.08 Total: 19.92 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.92 Total: 14.32 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -8.71 Total: -106.06 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.37 Total: -42.26 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -69.18 -0.21 -69.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604789461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.338 kcal (2) G-P(sol) polarization free energy of solvation -69.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds