Wall clock time and date at job start Wed Apr 1 2020 00:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52595 * 2 1 4 4 C 1.53041 * 109.49854 * 239.91631 * 2 1 3 5 5 C 1.53036 * 109.53755 * 178.68875 * 4 2 1 6 6 C 1.52763 * 109.38729 * 61.23911 * 5 4 2 7 7 N 1.46925 * 109.00381 * 305.59142 * 6 5 4 8 8 C 1.34780 * 120.62429 * 233.57910 * 7 6 5 9 9 O 1.21350 * 119.99795 * 175.52197 * 8 7 6 10 10 C 1.49448 * 120.00538 * 355.52253 * 8 7 6 11 11 O 1.21347 * 119.99915 * 84.09291 * 10 8 7 12 12 N 1.34774 * 119.99876 * 264.09989 * 10 8 7 13 13 C 1.46497 * 120.00048 * 4.52357 * 12 10 8 14 14 C 1.46503 * 119.99615 * 184.52269 * 12 10 8 15 15 C 1.53002 * 109.46901 * 90.00099 * 14 12 10 16 16 H 1.08993 * 109.47201 * 60.00064 * 15 14 12 17 17 O 1.42896 * 109.46864 * 299.99439 * 15 14 12 18 18 C 1.53000 * 109.46994 * 179.97438 * 15 14 12 19 19 N 1.46496 * 109.47380 * 185.00000 * 18 15 14 20 20 C 1.46502 * 119.99889 * 270.00089 * 19 18 15 21 21 C 1.36935 * 120.00324 * 89.99915 * 19 18 15 22 22 H 1.08003 * 119.99477 * 30.63182 * 21 19 18 23 23 C 1.38811 * 120.00100 * 210.63739 * 21 19 18 24 24 N 1.31615 * 120.00343 * 6.86800 * 23 21 19 25 25 Si 1.86801 * 119.99667 * 186.87533 * 23 21 19 26 26 H 1.48495 * 109.47267 * 89.99813 * 25 23 21 27 27 H 1.48500 * 109.46963 * 209.99826 * 25 23 21 28 28 H 1.48500 * 109.47103 * 329.99586 * 25 23 21 29 29 C 1.46917 * 118.74225 * 53.30895 * 7 6 5 30 30 H 1.09000 * 109.47291 * 299.92557 * 1 2 3 31 31 H 1.09008 * 109.46650 * 59.91868 * 1 2 3 32 32 H 1.09000 * 109.47211 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46043 * 298.70553 * 4 2 1 34 34 H 1.08997 * 109.46260 * 58.66613 * 4 2 1 35 35 H 1.09000 * 109.50011 * 181.31887 * 5 4 2 36 36 H 1.09009 * 109.49615 * 301.41184 * 5 4 2 37 37 H 1.08993 * 109.50921 * 185.70952 * 6 5 4 38 38 H 1.09000 * 109.42852 * 65.42564 * 6 5 4 39 39 H 1.08996 * 109.47162 * 84.79516 * 13 12 10 40 40 H 1.09003 * 109.46958 * 204.79449 * 13 12 10 41 41 H 1.08994 * 109.47167 * 324.79009 * 13 12 10 42 42 H 1.09005 * 109.47173 * 209.99481 * 14 12 10 43 43 H 1.09000 * 109.47713 * 329.99483 * 14 12 10 44 44 H 0.96694 * 114.00041 * 299.99957 * 17 15 14 45 45 H 1.09007 * 109.47456 * 305.00282 * 18 15 14 46 46 H 1.09007 * 109.47049 * 65.00116 * 18 15 14 47 47 H 1.09007 * 109.47003 * 94.50883 * 20 19 18 48 48 H 1.08998 * 109.47122 * 214.50751 * 20 19 18 49 49 H 1.08997 * 109.47469 * 334.50884 * 20 19 18 50 50 H 0.96998 * 120.00461 * 180.02562 * 24 23 21 51 51 H 1.09004 * 109.59103 * 66.42650 * 29 7 6 52 52 H 1.08998 * 109.58745 * 186.70939 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6952 -1.2659 6 6 4.1055 -1.4217 -0.0330 7 7 3.5045 -0.8292 1.1697 8 6 4.2811 -0.3857 2.1780 9 8 3.7783 0.1751 3.1295 10 6 5.7613 -0.5844 2.1243 11 8 6.4580 0.2050 1.5210 12 7 6.3224 -1.6404 2.7460 13 6 5.4745 -2.6468 3.3898 14 6 7.7802 -1.7818 2.7778 15 6 8.3335 -1.0817 4.0207 16 1 7.9049 -1.5352 4.9142 17 8 7.9903 0.3048 3.9786 18 6 9.8559 -1.2299 4.0543 19 7 10.3742 -0.6645 5.3023 20 6 10.7559 0.7487 5.3634 21 6 10.5020 -1.4567 6.4119 22 1 10.7103 -2.5107 6.3017 23 6 10.3637 -0.9051 7.6782 24 7 9.9774 0.3459 7.8126 25 14 10.7261 -1.9384 9.1916 26 1 12.1583 -1.7957 9.5571 27 1 9.8788 -1.4770 10.3205 28 1 10.4292 -3.3640 8.9004 29 6 2.0413 -0.7238 1.2496 30 1 -0.3634 0.5127 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6967 -1.7574 -1.2352 34 1 1.6583 -0.2246 -2.1389 35 1 3.9335 -1.1898 -2.1669 36 1 3.9160 0.3388 -1.2540 37 1 5.1894 -1.3161 0.0102 38 1 3.8412 -2.4776 -0.0914 39 1 5.1558 -3.3807 2.6496 40 1 6.0382 -3.1465 4.1776 41 1 4.5989 -2.1619 3.8212 42 1 8.0421 -2.8395 2.8099 43 1 8.2090 -1.3284 1.8842 44 1 8.3394 0.7732 3.2081 45 1 10.1196 -2.2861 3.9968 46 1 10.2914 -0.7001 3.2069 47 1 9.9182 1.3353 5.7409 48 1 11.6107 0.8657 6.0294 49 1 11.0225 1.0965 4.3654 50 1 9.8811 0.7314 8.6974 51 1 1.6051 -1.7216 1.2980 52 1 1.7636 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649476189.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:46 Heat of formation + Delta-G solvation = -94.106795 kcal Electronic energy + Delta-G solvation = -31641.167433 eV Core-core repulsion = 27448.698486 eV Total energy + Delta-G solvation = -4192.468946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05255 -39.28389 -37.82451 -37.07918 -35.41267 -34.43527 -34.17827 -32.26913 -31.30310 -29.84540 -27.72272 -27.04641 -26.62659 -25.74463 -25.36873 -23.15126 -22.70375 -21.54830 -20.47475 -20.34210 -18.93337 -17.90603 -17.09396 -16.82764 -16.50240 -15.70980 -15.60864 -15.37199 -14.99002 -14.85685 -14.64714 -14.55110 -14.31857 -13.90912 -13.74687 -13.56797 -13.37627 -13.17881 -13.02475 -12.97637 -12.79904 -12.44573 -12.40167 -12.21751 -11.71574 -11.56501 -11.52037 -11.38322 -11.24619 -11.09718 -11.05565 -10.83797 -10.79833 -10.63896 -10.34638 -10.25388 -10.00377 -9.86963 -9.67773 -9.41652 -9.03432 -8.59244 -8.42216 -6.53163 -5.64726 -3.19866 2.06006 2.16595 2.51655 3.24569 3.39953 3.45354 3.47671 4.04269 4.28182 4.39677 4.42371 4.52832 4.57419 4.81980 4.96381 5.01107 5.04837 5.09645 5.15269 5.17456 5.25985 5.31908 5.32727 5.37256 5.41450 5.50741 5.54565 5.56737 5.62739 5.69702 5.72355 5.75020 5.77503 5.91356 5.97224 6.05106 6.11273 6.14412 6.42951 6.59730 6.85856 6.89348 6.90502 7.17831 7.43800 7.69620 7.84594 7.89263 7.97340 8.49667 8.53492 9.30619 9.92119 10.46169 11.37690 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.002429 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.630823 B =11523.551358 C =11852.982167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.106 3.894 7 N -0.601 5.601 8 C 0.519 3.481 9 O -0.506 6.506 10 C 0.524 3.476 11 O -0.514 6.514 12 N -0.588 5.588 13 C 0.072 3.928 14 C 0.077 3.923 15 C 0.070 3.930 16 H 0.097 0.903 17 O -0.539 6.539 18 C 0.126 3.874 19 N -0.590 5.590 20 C 0.165 3.835 21 C -0.265 4.265 22 H 0.064 0.936 23 C 0.010 3.990 24 N -0.894 5.894 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.114 3.886 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.360 0.640 45 H 0.049 0.951 46 H 0.039 0.961 47 H 0.039 0.961 48 H 0.032 0.968 49 H -0.006 1.006 50 H 0.253 0.747 51 H 0.072 0.928 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.987 -7.309 -20.792 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.174 4.174 6 C -0.017 4.017 7 N -0.337 5.337 8 C 0.302 3.698 9 O -0.379 6.379 10 C 0.306 3.694 11 O -0.389 6.389 12 N -0.321 5.321 13 C -0.071 4.071 14 C -0.046 4.046 15 C 0.006 3.994 16 H 0.115 0.885 17 O -0.342 6.342 18 C -0.003 4.003 19 N -0.311 5.311 20 C 0.020 3.980 21 C -0.395 4.395 22 H 0.082 0.918 23 C -0.190 4.190 24 N -0.537 5.537 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.008 4.008 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.205 0.795 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.013 0.987 50 H 0.063 0.937 51 H 0.090 0.910 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.164 -6.615 -19.829 27.047 hybrid contribution 0.330 -0.450 0.500 0.749 sum -16.834 -7.065 -19.329 26.588 Atomic orbital electron populations 1.21760 0.94127 1.02092 1.02265 1.21529 0.96133 1.00427 0.94741 0.90511 1.21598 0.95042 1.00853 0.97675 1.21843 0.96177 1.01970 0.97409 1.21718 0.98708 0.97221 0.84055 1.48138 1.06908 1.60540 1.18136 1.20477 0.87697 0.78888 0.82781 1.90825 1.73461 1.40438 1.33174 1.19902 0.88114 0.81850 0.79490 1.90758 1.62328 1.43043 1.42791 1.47734 1.07743 1.22833 1.53812 1.21907 0.95597 0.91456 0.98144 1.22647 0.77976 1.02213 1.01727 1.23283 0.98044 0.82345 0.95714 0.88507 1.86690 1.77856 1.20933 1.48738 1.21468 0.90760 0.97802 0.90229 1.43739 1.72071 1.07851 1.07471 1.20793 0.98822 0.84324 0.94014 1.19098 1.43547 0.92595 0.84280 0.91849 1.25285 0.99146 0.96522 0.98057 1.70042 1.49120 1.12747 1.21824 0.86316 0.77671 0.79722 0.83125 1.21456 1.21682 1.20481 1.21763 0.78382 1.01135 0.99495 0.92237 0.92209 0.92413 0.91599 0.91410 0.90257 0.91030 0.89648 0.90792 0.92288 0.89584 0.91154 0.89456 0.89650 0.79472 0.93232 0.94227 0.94225 0.94880 0.98723 0.93708 0.90953 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.45 16 2 C -0.11 -0.78 2.87 -90.50 -0.26 -1.04 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -0.66 5.17 -26.69 -0.14 -0.80 16 5 C -0.14 -0.92 6.06 -26.83 -0.16 -1.09 16 6 C 0.11 0.87 6.30 -3.93 -0.02 0.84 16 7 N -0.60 -6.49 2.98 -173.55 -0.52 -7.01 16 8 C 0.52 7.82 5.78 -11.58 -0.07 7.75 16 9 O -0.51 -9.42 16.33 5.50 0.09 -9.33 16 10 C 0.52 8.35 5.04 -11.59 -0.06 8.29 16 11 O -0.51 -9.30 15.52 3.04 0.05 -9.26 16 12 N -0.59 -8.30 2.83 -182.08 -0.51 -8.81 16 13 C 0.07 0.80 10.22 59.85 0.61 1.42 16 14 C 0.08 1.10 5.14 -4.04 -0.02 1.08 16 15 C 0.07 1.34 3.48 -26.73 -0.09 1.24 16 16 H 0.10 2.15 8.14 -51.93 -0.42 1.73 16 17 O -0.54 -11.87 11.80 -37.69 -0.44 -12.31 16 18 C 0.13 2.55 5.37 -4.04 -0.02 2.53 16 19 N -0.59 -15.16 2.86 -181.11 -0.52 -15.68 16 20 C 0.17 4.28 8.64 59.85 0.52 4.80 16 21 C -0.27 -7.37 9.59 -15.06 -0.14 -7.52 16 22 H 0.06 1.70 7.84 -52.48 -0.41 1.29 16 23 C 0.01 0.29 5.22 -17.43 -0.09 0.19 16 24 N -0.89 -27.15 10.87 55.49 0.60 -26.55 16 25 Si 0.90 22.14 29.56 -169.99 -5.02 17.11 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.11 1.01 5.73 -3.71 -0.02 0.98 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.09 0.82 6.20 -51.93 -0.32 0.50 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 41 H 0.07 0.87 6.87 -51.93 -0.36 0.51 16 42 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 43 H 0.09 1.19 7.36 -51.93 -0.38 0.81 16 44 H 0.36 7.12 8.60 45.56 0.39 7.51 16 45 H 0.05 0.93 8.04 -51.92 -0.42 0.51 16 46 H 0.04 0.73 7.86 -51.92 -0.41 0.32 16 47 H 0.04 1.14 7.24 -51.92 -0.38 0.77 16 48 H 0.03 0.90 7.65 -51.93 -0.40 0.50 16 49 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 LS Contribution 412.52 15.07 6.22 6.22 Total: -1.00 -36.07 412.52 -8.19 -44.26 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.49 Total: 3.13 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 0.37 Total: 18.22 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.95 Total: -58.05 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.31 Total: -30.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.07 -8.19 -44.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649476189.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.842 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds