Wall clock time and date at job start Wed Apr 1 2020 01:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00385 * 2 1 4 4 H 1.08999 * 109.46939 * 330.00364 * 3 2 1 5 5 C 1.53005 * 109.47071 * 89.99818 * 3 2 1 6 6 C 1.50698 * 109.47483 * 210.00175 * 3 2 1 7 7 O 1.21281 * 119.99749 * 349.89126 * 6 3 2 8 8 N 1.34774 * 119.99921 * 169.88737 * 6 3 2 9 9 C 1.46929 * 120.63379 * 354.15616 * 8 6 3 10 10 C 1.53187 * 108.89502 * 126.29868 * 9 8 6 11 11 C 1.53350 * 109.15081 * 54.57980 * 10 9 8 12 12 H 1.09003 * 109.43066 * 58.75868 * 11 10 9 13 13 C 1.53000 * 109.40610 * 178.68270 * 11 10 9 14 14 C 1.53042 * 109.60646 * 298.71427 * 11 10 9 15 15 C 1.46930 * 120.63070 * 174.13430 * 8 6 3 16 16 H 1.09001 * 109.58494 * 113.84101 * 15 8 6 17 17 C 1.52997 * 109.58458 * 353.41785 * 15 8 6 18 18 N 1.46897 * 109.46944 * 181.14626 * 17 15 8 19 19 C 1.46902 * 111.00091 * 184.96551 * 18 17 15 20 20 C 1.50695 * 109.47425 * 179.97438 * 19 18 17 21 21 O 1.21293 * 119.99946 * 359.97438 * 20 19 18 22 22 N 1.34782 * 120.00210 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99809 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00363 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99583 * 179.97438 * 23 22 20 26 26 N 1.31414 * 120.00401 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00014 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46956 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47265 * 119.99746 * 27 25 23 30 30 H 1.48504 * 109.46977 * 240.00231 * 27 25 23 31 31 H 1.09005 * 109.46866 * 299.99852 * 1 2 3 32 32 H 1.09002 * 109.47118 * 59.99672 * 1 2 3 33 33 H 1.09002 * 109.47468 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46949 * 184.99057 * 5 3 2 35 35 H 1.08999 * 109.47227 * 304.99845 * 5 3 2 36 36 H 1.09001 * 109.46719 * 64.99391 * 5 3 2 37 37 H 1.09003 * 109.58705 * 246.16189 * 9 8 6 38 38 H 1.09005 * 109.58466 * 6.43739 * 9 8 6 39 39 H 1.09003 * 109.49731 * 174.65610 * 10 9 8 40 40 H 1.09002 * 109.49491 * 294.75437 * 10 9 8 41 41 H 1.09008 * 109.46506 * 180.12035 * 13 11 10 42 42 H 1.08996 * 109.47053 * 300.11728 * 13 11 10 43 43 H 1.08998 * 109.47292 * 60.12089 * 13 11 10 44 44 H 1.09002 * 109.49215 * 301.42145 * 14 11 10 45 45 H 1.08998 * 109.49564 * 181.32775 * 14 11 10 46 46 H 1.09007 * 109.46924 * 301.13899 * 17 15 8 47 47 H 1.08997 * 109.47402 * 61.13978 * 17 15 8 48 48 H 1.00901 * 110.99899 * 308.91120 * 18 17 15 49 49 H 1.09006 * 109.47002 * 299.99907 * 19 18 17 50 50 H 1.09001 * 109.47341 * 59.99271 * 19 18 17 51 51 H 0.96994 * 119.99682 * 359.97438 * 22 20 19 52 52 H 0.96999 * 120.00464 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.8335 0.1976 -1.0090 8 7 3.9766 2.4115 -1.0140 9 6 3.3341 3.7111 -0.7751 10 6 4.2698 4.5789 0.0723 11 6 5.6363 4.6675 -0.6180 12 1 5.5127 5.0939 -1.6136 13 6 6.5656 5.5600 0.2070 14 6 6.2444 3.2680 -0.7347 15 6 5.3282 2.3870 -1.5897 16 1 5.2982 2.7721 -2.6090 17 6 5.8569 0.9513 -1.5961 18 7 7.2187 0.9335 -2.1468 19 6 7.7155 -0.4427 -2.2782 20 6 9.1114 -0.4209 -2.8454 21 8 9.6403 0.6370 -3.1143 22 7 9.7723 -1.5770 -3.0539 23 6 11.0420 -1.5571 -3.5705 24 1 11.5127 -0.6152 -3.8107 25 6 11.7235 -2.7489 -3.7849 26 7 11.1507 -3.8951 -3.4931 27 14 13.4539 -2.7219 -4.4881 28 1 13.8681 -1.3164 -4.7297 29 1 14.3896 -3.3555 -3.5247 30 1 13.4793 -3.4722 -5.7694 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.5779 2.8000 1.4438 35 1 1.2719 1.7168 1.9816 36 1 2.9511 1.1289 1.9299 37 1 3.1414 4.2042 -1.7280 38 1 2.3937 3.5617 -0.2444 39 1 3.8454 5.5775 0.1759 40 1 4.3891 4.1296 1.0582 41 1 7.5367 5.6254 -0.2840 42 1 6.1326 6.5568 0.2901 43 1 6.6897 5.1336 1.2024 44 1 6.3453 2.8312 0.2589 45 1 7.2258 3.3357 -1.2042 46 1 5.8722 0.5652 -0.5768 47 1 5.2080 0.3278 -2.2112 48 1 7.2574 1.4177 -3.0312 49 1 7.7286 -0.9194 -1.2979 50 1 7.0610 -1.0031 -2.9458 51 1 9.3494 -2.4229 -2.8385 52 1 11.6263 -4.7271 -3.6432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656522963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:33 Heat of formation + Delta-G solvation = -103.830326 kcal Electronic energy + Delta-G solvation = -31054.247883 eV Core-core repulsion = 26861.357293 eV Total energy + Delta-G solvation = -4192.890590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.00730 -38.63635 -38.08984 -37.42543 -35.44792 -34.28192 -33.78007 -32.30568 -31.16205 -30.88973 -28.72466 -27.19527 -27.02418 -25.27381 -24.41415 -23.75641 -23.00368 -21.62758 -20.61374 -19.39243 -18.95987 -17.81732 -17.63525 -17.08683 -16.09337 -16.02353 -15.76148 -15.31959 -15.14526 -14.95334 -14.69565 -14.52352 -14.24984 -14.03819 -13.90563 -13.79479 -13.41860 -13.32731 -13.13255 -12.82760 -12.80070 -12.56298 -12.24978 -12.07016 -12.06014 -11.97899 -11.67355 -11.54406 -11.43788 -11.36130 -11.14099 -11.08841 -10.95429 -10.67027 -10.47908 -10.28592 -10.22138 -10.14455 -9.43680 -9.33317 -8.79635 -8.29503 -7.88036 -7.72028 -6.33179 -3.73791 2.38500 2.46756 3.21980 3.31628 3.39143 3.48358 4.02617 4.11040 4.22556 4.31231 4.46121 4.49621 4.55809 4.60240 4.63867 4.82565 4.89147 4.97106 4.97838 5.05584 5.09817 5.17761 5.27235 5.30047 5.31278 5.32651 5.35632 5.41041 5.47368 5.59770 5.61358 5.69389 5.74755 5.88139 5.96572 5.99041 6.04220 6.14726 6.17688 6.26770 6.36857 6.40282 6.54821 6.68566 7.15568 7.41001 7.63123 7.83800 8.05580 8.15893 8.71159 9.26628 9.64735 10.16496 10.84840 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.002414 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.983940 B =11594.977480 C =13377.918867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.069 3.931 4 H 0.081 0.919 5 C -0.173 4.173 6 C 0.513 3.487 7 O -0.504 6.504 8 N -0.606 5.606 9 C 0.103 3.897 10 C -0.131 4.131 11 C -0.095 4.095 12 H 0.070 0.930 13 C -0.146 4.146 14 C -0.116 4.116 15 C 0.151 3.849 16 H 0.071 0.929 17 C 0.063 3.937 18 N -0.674 5.674 19 C 0.056 3.944 20 C 0.444 3.556 21 O -0.585 6.585 22 N -0.566 5.566 23 C -0.297 4.297 24 H 0.103 0.897 25 C 0.020 3.980 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.342 0.658 49 H 0.084 0.916 50 H 0.043 0.957 51 H 0.392 0.608 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.285 16.553 9.646 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.007 3.993 4 H 0.099 0.901 5 C -0.231 4.231 6 C 0.300 3.700 7 O -0.378 6.378 8 N -0.343 5.343 9 C -0.020 4.020 10 C -0.169 4.169 11 C -0.113 4.113 12 H 0.089 0.911 13 C -0.203 4.203 14 C -0.155 4.155 15 C 0.049 3.951 16 H 0.089 0.911 17 C -0.065 4.065 18 N -0.307 5.307 19 C -0.076 4.076 20 C 0.229 3.771 21 O -0.469 6.469 22 N -0.203 5.203 23 C -0.426 4.426 24 H 0.121 0.879 25 C -0.181 4.181 26 N -0.544 5.544 27 Si 0.756 3.244 28 H -0.193 1.193 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.161 0.839 49 H 0.103 0.897 50 H 0.061 0.939 51 H 0.226 0.774 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.188 16.396 9.897 30.075 hybrid contribution -0.232 -0.627 -0.868 1.096 sum -23.421 15.769 9.028 29.643 Atomic orbital electron populations 1.22886 0.80681 1.03361 0.99872 1.88079 1.19558 1.25065 1.94909 1.21983 0.93789 0.86722 0.96776 0.90094 1.22301 1.03587 1.02237 0.94935 1.20374 0.86402 0.84039 0.79222 1.90790 1.65765 1.29814 1.51413 1.48116 1.17051 1.05450 1.63637 1.21865 0.96087 0.83709 1.00366 1.22079 0.95796 0.99666 0.99375 1.21224 0.94323 0.96378 0.99407 0.91117 1.21800 0.99634 0.98742 1.00125 1.21970 0.99568 0.93082 1.00843 1.21324 0.79911 0.97416 0.96492 0.91072 1.22584 0.88320 0.93579 1.02056 1.60132 1.22036 1.15321 1.33247 1.21577 0.95010 0.90015 1.01029 1.19876 0.87724 0.84846 0.84605 1.90500 1.69460 1.30457 1.56481 1.41881 1.15102 1.06921 1.56393 1.19745 0.90476 0.94549 1.37864 0.87924 1.25264 1.00187 0.94703 0.97962 1.69630 1.38465 0.97579 1.48720 0.85809 0.81767 0.78489 0.78313 1.19260 1.20795 1.20836 0.93889 0.93916 0.89044 0.90623 0.91207 0.90908 0.91045 0.89804 0.90714 0.91280 0.92173 0.92976 0.92724 0.91549 0.88825 0.90625 0.91946 0.83903 0.89745 0.93908 0.77430 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.02 9.90 -54.94 -0.54 -4.56 16 3 C 0.07 0.62 2.28 -27.88 -0.06 0.55 16 4 H 0.08 0.50 6.76 -51.93 -0.35 0.15 16 5 C -0.17 -1.19 9.20 37.16 0.34 -0.84 16 6 C 0.51 6.24 6.87 -10.99 -0.08 6.16 16 7 O -0.50 -8.36 12.09 -14.15 -0.17 -8.53 16 8 N -0.61 -6.07 2.97 -165.22 -0.49 -6.56 16 9 C 0.10 0.64 5.59 -3.71 -0.02 0.62 16 10 C -0.13 -0.79 5.27 -26.45 -0.14 -0.93 16 11 C -0.09 -0.77 2.68 -90.42 -0.24 -1.01 16 12 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 13 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 14 C -0.12 -1.29 4.40 -26.61 -0.12 -1.41 16 15 C 0.15 1.80 3.09 -67.60 -0.21 1.59 16 16 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 17 C 0.06 0.98 3.58 -3.83 -0.01 0.96 16 18 N -0.67 -11.97 5.50 -115.06 -0.63 -12.61 16 19 C 0.06 1.13 6.16 -4.98 -0.03 1.10 16 20 C 0.44 11.12 7.82 -10.99 -0.09 11.04 16 21 O -0.58 -16.43 15.78 5.55 0.09 -16.35 16 22 N -0.57 -15.16 5.29 -10.96 -0.06 -15.21 16 23 C -0.30 -8.59 9.68 -14.93 -0.14 -8.74 16 24 H 0.10 3.10 7.16 -52.49 -0.38 2.73 16 25 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 26 N -0.90 -25.54 13.05 55.50 0.72 -24.81 16 27 Si 0.93 21.71 29.55 -169.99 -5.02 16.69 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 31 H 0.04 0.21 7.78 -51.93 -0.40 -0.19 16 32 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.39 5.70 -51.93 -0.30 0.09 16 35 H 0.07 0.37 7.78 -51.93 -0.40 -0.04 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.35 4.57 -51.93 -0.24 0.12 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.45 7.74 -51.93 -0.40 0.05 16 41 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 1.23 7.79 -51.93 -0.40 0.83 16 46 H 0.08 1.29 7.30 -51.92 -0.38 0.91 16 47 H 0.06 1.08 6.16 -51.93 -0.32 0.76 16 48 H 0.34 6.11 8.36 -39.29 -0.33 5.78 16 49 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 50 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.39 10.16 7.90 -40.82 -0.32 9.83 16 52 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -35.01 406.71 -8.29 -43.30 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -8.85 Total: 12.48 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 0.54 Total: 10.04 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.46 Total: -59.19 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.63 Total: -29.44 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.01 -8.29 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656522963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.529 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds