Wall clock time and date at job start Wed Apr 1 2020 01:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00385 * 2 1 4 4 H 1.08999 * 109.46939 * 330.00364 * 3 2 1 5 5 C 1.53005 * 109.47071 * 89.99818 * 3 2 1 6 6 C 1.50698 * 109.47483 * 210.00175 * 3 2 1 7 7 O 1.21281 * 119.99749 * 349.89126 * 6 3 2 8 8 N 1.34774 * 119.99921 * 169.88737 * 6 3 2 9 9 C 1.46929 * 120.63379 * 354.15616 * 8 6 3 10 10 C 1.53187 * 108.89502 * 126.29868 * 9 8 6 11 11 C 1.53350 * 109.15081 * 54.57980 * 10 9 8 12 12 H 1.09003 * 109.43066 * 58.75868 * 11 10 9 13 13 C 1.53000 * 109.40610 * 178.68270 * 11 10 9 14 14 C 1.53042 * 109.60646 * 298.71427 * 11 10 9 15 15 C 1.46930 * 120.63070 * 174.13430 * 8 6 3 16 16 H 1.09001 * 109.58494 * 113.84101 * 15 8 6 17 17 C 1.52997 * 109.58458 * 353.41785 * 15 8 6 18 18 N 1.46897 * 109.46944 * 181.14626 * 17 15 8 19 19 C 1.46902 * 111.00091 * 184.96551 * 18 17 15 20 20 C 1.50695 * 109.47425 * 179.97438 * 19 18 17 21 21 O 1.21293 * 119.99946 * 359.97438 * 20 19 18 22 22 N 1.34782 * 120.00210 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99809 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00363 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99583 * 179.97438 * 23 22 20 26 26 N 1.31414 * 120.00401 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00014 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46956 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47265 * 119.99746 * 27 25 23 30 30 H 1.48504 * 109.46977 * 240.00231 * 27 25 23 31 31 H 1.09005 * 109.46866 * 299.99852 * 1 2 3 32 32 H 1.09002 * 109.47118 * 59.99672 * 1 2 3 33 33 H 1.09002 * 109.47468 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46949 * 184.99057 * 5 3 2 35 35 H 1.08999 * 109.47227 * 304.99845 * 5 3 2 36 36 H 1.09001 * 109.46719 * 64.99391 * 5 3 2 37 37 H 1.09003 * 109.58705 * 246.16189 * 9 8 6 38 38 H 1.09005 * 109.58466 * 6.43739 * 9 8 6 39 39 H 1.09003 * 109.49731 * 174.65610 * 10 9 8 40 40 H 1.09002 * 109.49491 * 294.75437 * 10 9 8 41 41 H 1.09008 * 109.46506 * 180.12035 * 13 11 10 42 42 H 1.08996 * 109.47053 * 300.11728 * 13 11 10 43 43 H 1.08998 * 109.47292 * 60.12089 * 13 11 10 44 44 H 1.09002 * 109.49215 * 301.42145 * 14 11 10 45 45 H 1.08998 * 109.49564 * 181.32775 * 14 11 10 46 46 H 1.09007 * 109.46924 * 301.13899 * 17 15 8 47 47 H 1.08997 * 109.47402 * 61.13978 * 17 15 8 48 48 H 1.00901 * 110.99899 * 308.91120 * 18 17 15 49 49 H 1.09006 * 109.47002 * 299.99907 * 19 18 17 50 50 H 1.09001 * 109.47341 * 59.99271 * 19 18 17 51 51 H 0.96994 * 119.99682 * 359.97438 * 22 20 19 52 52 H 0.96999 * 120.00464 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.8335 0.1976 -1.0090 8 7 3.9766 2.4115 -1.0140 9 6 3.3341 3.7111 -0.7751 10 6 4.2698 4.5789 0.0723 11 6 5.6363 4.6675 -0.6180 12 1 5.5127 5.0939 -1.6136 13 6 6.5656 5.5600 0.2070 14 6 6.2444 3.2680 -0.7347 15 6 5.3282 2.3870 -1.5897 16 1 5.2982 2.7721 -2.6090 17 6 5.8569 0.9513 -1.5961 18 7 7.2187 0.9335 -2.1468 19 6 7.7155 -0.4427 -2.2782 20 6 9.1114 -0.4209 -2.8454 21 8 9.6403 0.6370 -3.1143 22 7 9.7723 -1.5770 -3.0539 23 6 11.0420 -1.5571 -3.5705 24 1 11.5127 -0.6152 -3.8107 25 6 11.7235 -2.7489 -3.7849 26 7 11.1507 -3.8951 -3.4931 27 14 13.4539 -2.7219 -4.4881 28 1 13.8681 -1.3164 -4.7297 29 1 14.3896 -3.3555 -3.5247 30 1 13.4793 -3.4722 -5.7694 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.5779 2.8000 1.4438 35 1 1.2719 1.7168 1.9816 36 1 2.9511 1.1289 1.9299 37 1 3.1414 4.2042 -1.7280 38 1 2.3937 3.5617 -0.2444 39 1 3.8454 5.5775 0.1759 40 1 4.3891 4.1296 1.0582 41 1 7.5367 5.6254 -0.2840 42 1 6.1326 6.5568 0.2901 43 1 6.6897 5.1336 1.2024 44 1 6.3453 2.8312 0.2589 45 1 7.2258 3.3357 -1.2042 46 1 5.8722 0.5652 -0.5768 47 1 5.2080 0.3278 -2.2112 48 1 7.2574 1.4177 -3.0312 49 1 7.7286 -0.9194 -1.2979 50 1 7.0610 -1.0031 -2.9458 51 1 9.3494 -2.4229 -2.8385 52 1 11.6263 -4.7271 -3.6432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656522963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:28 Heat of formation + Delta-G solvation = -129.698409 kcal Electronic energy + Delta-G solvation = -31055.369607 eV Core-core repulsion = 26861.357293 eV Total energy + Delta-G solvation = -4194.012315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.87041 -40.17474 -39.31385 -38.24990 -36.87608 -35.86781 -35.06817 -33.40771 -33.11714 -31.70451 -29.56822 -28.49700 -27.70216 -26.74049 -25.62359 -24.65631 -23.99499 -22.64202 -21.43521 -21.07034 -20.07916 -19.83841 -18.56117 -17.86044 -17.66713 -17.12154 -16.73164 -16.54404 -16.47042 -16.07728 -15.90114 -15.67324 -15.46369 -15.28498 -14.95671 -14.73807 -14.54771 -14.40843 -14.18062 -14.13789 -13.60282 -13.50348 -13.37587 -13.25351 -13.16709 -12.96401 -12.84901 -12.74604 -12.64829 -12.43492 -12.42270 -12.12305 -12.10504 -12.02077 -11.86694 -11.53307 -11.37914 -11.22539 -10.87232 -10.41673 -10.27923 -10.04188 -9.65591 -9.17825 -8.48032 -5.97737 1.35767 1.40306 1.51370 1.55744 1.68234 2.00769 2.27975 2.77525 3.03633 3.18249 3.41875 3.56383 3.71151 3.77093 3.89287 3.91427 4.02116 4.07189 4.19636 4.23543 4.29465 4.42305 4.44486 4.49217 4.51198 4.55023 4.59881 4.63588 4.65710 4.78568 4.81405 4.85391 4.86689 4.93480 4.99485 5.02340 5.10276 5.21075 5.22595 5.29630 5.39046 5.40839 5.56988 5.60029 5.82422 6.02527 6.10118 6.37048 6.41571 6.56845 7.09440 7.16453 7.52204 8.06643 8.69965 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.002414 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.983940 B =11594.977480 C =13377.918867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.072 3.928 4 H 0.117 0.883 5 C -0.167 4.167 6 C 0.501 3.499 7 O -0.562 6.562 8 N -0.600 5.600 9 C 0.095 3.905 10 C -0.125 4.125 11 C -0.091 4.091 12 H 0.078 0.922 13 C -0.144 4.144 14 C -0.109 4.109 15 C 0.155 3.845 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.676 5.676 19 C 0.070 3.930 20 C 0.442 3.558 21 O -0.618 6.618 22 N -0.574 5.574 23 C -0.333 4.333 24 H 0.081 0.919 25 C -0.016 4.016 26 N -0.923 5.923 27 Si 0.998 3.002 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.270 1.270 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.046 0.954 48 H 0.342 0.658 49 H 0.092 0.908 50 H 0.055 0.945 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.208 18.520 10.134 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.011 3.989 4 H 0.134 0.866 5 C -0.224 4.224 6 C 0.290 3.710 7 O -0.440 6.440 8 N -0.335 5.335 9 C -0.025 4.025 10 C -0.163 4.163 11 C -0.110 4.110 12 H 0.096 0.904 13 C -0.201 4.201 14 C -0.147 4.147 15 C 0.051 3.949 16 H 0.096 0.904 17 C -0.050 4.050 18 N -0.310 5.310 19 C -0.063 4.063 20 C 0.230 3.770 21 O -0.504 6.504 22 N -0.211 5.211 23 C -0.463 4.463 24 H 0.099 0.901 25 C -0.216 4.216 26 N -0.564 5.564 27 Si 0.821 3.179 28 H -0.196 1.196 29 H -0.195 1.195 30 H -0.195 1.195 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.161 0.839 49 H 0.110 0.890 50 H 0.073 0.927 51 H 0.228 0.772 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.159 18.393 10.407 32.857 hybrid contribution 0.323 -1.237 -1.004 1.625 sum -24.837 17.156 9.403 31.617 Atomic orbital electron populations 1.23085 0.78635 1.04042 1.01576 1.88032 1.21954 1.26696 1.95187 1.22106 0.92210 0.86826 0.97785 0.86565 1.22295 1.04064 1.02665 0.93415 1.21178 0.87564 0.83592 0.78678 1.90757 1.67457 1.31898 1.53863 1.48200 1.15983 1.06775 1.62510 1.22244 0.96867 0.81593 1.01838 1.22068 0.94233 1.01309 0.98683 1.21207 0.95567 0.93900 1.00307 0.90398 1.21782 0.99020 0.99786 0.99543 1.21850 0.98443 0.95198 0.99257 1.21149 0.81441 0.94920 0.97357 0.90381 1.22407 0.86477 0.96009 1.00090 1.60131 1.23755 1.13907 1.33217 1.21405 0.92047 0.91674 1.01139 1.20667 0.89120 0.83856 0.83393 1.90466 1.70746 1.31492 1.57695 1.41955 1.14907 1.07498 1.56713 1.19744 0.91865 0.94395 1.40252 0.90052 1.26142 1.04060 0.93890 0.97487 1.69701 1.40022 0.98145 1.48505 0.84806 0.76631 0.78387 0.78086 1.19562 1.19525 1.19472 0.91623 0.92620 0.89098 0.88474 0.89027 0.93609 0.89309 0.86967 0.87573 0.91592 0.93750 0.90851 0.93182 0.93155 0.91448 0.92643 0.93589 0.83936 0.89031 0.92677 0.77158 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.40 -8.66 9.90 -130.14 -1.29 -9.95 16 3 C 0.07 1.14 2.28 29.85 0.07 1.21 16 4 H 0.12 0.98 6.76 -2.39 -0.02 0.96 16 5 C -0.17 -1.88 9.20 71.98 0.66 -1.22 16 6 C 0.50 12.03 6.87 87.66 0.60 12.63 16 7 O -0.56 -19.51 12.09 15.81 0.19 -19.32 16 8 N -0.60 -11.28 2.97 -795.02 -2.36 -13.65 16 9 C 0.10 0.84 5.59 86.36 0.48 1.32 16 10 C -0.13 -1.07 5.27 30.77 0.16 -0.90 16 11 C -0.09 -1.31 2.68 -10.66 -0.03 -1.34 16 12 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 13 C -0.14 -2.04 9.19 71.98 0.66 -1.38 16 14 C -0.11 -2.46 4.40 30.67 0.14 -2.33 16 15 C 0.15 3.72 3.09 44.97 0.14 3.86 16 16 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 17 C 0.08 2.55 3.58 86.30 0.31 2.86 16 18 N -0.68 -25.15 5.50 -517.93 -2.85 -28.00 16 19 C 0.07 2.91 6.16 85.56 0.53 3.44 16 20 C 0.44 23.00 7.82 87.65 0.69 23.69 16 21 O -0.62 -36.05 15.78 -3.07 -0.05 -36.10 16 22 N -0.57 -31.77 5.29 -306.98 -1.62 -33.39 16 23 C -0.33 -19.85 9.68 84.04 0.81 -19.04 16 24 H 0.08 5.12 7.16 -2.91 -0.02 5.10 16 25 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 26 N -0.92 -52.29 13.05 21.66 0.28 -52.01 16 27 Si 1.00 44.51 29.55 68.60 2.03 46.53 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 31 H 0.07 0.44 7.78 -2.38 -0.02 0.42 16 32 H 0.06 0.48 8.09 -2.39 -0.02 0.46 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 0.64 5.70 -2.39 -0.01 0.62 16 35 H 0.09 0.65 7.78 -2.39 -0.02 0.63 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.11 0.39 4.57 -2.38 -0.01 0.38 16 39 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.07 0.65 7.74 -2.39 -0.02 0.63 16 41 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.87 7.79 -2.39 -0.02 1.85 16 46 H 0.06 2.03 7.30 -2.38 -0.02 2.01 16 47 H 0.05 1.68 6.16 -2.39 -0.01 1.67 16 48 H 0.34 12.74 8.36 -89.69 -0.75 11.99 16 49 H 0.09 3.67 8.14 -2.38 -0.02 3.65 16 50 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.39 21.10 7.90 -92.71 -0.73 20.37 16 52 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -80.06 406.71 0.69 -79.37 By element: Atomic # 1 Polarization: 43.23 SS G_CDS: -0.55 Total: 42.68 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 6.91 Total: 23.83 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -6.55 Total: -127.05 kcal Atomic # 8 Polarization: -64.22 SS G_CDS: -1.15 Total: -65.36 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -80.06 0.69 -79.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656522963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.327 kcal (2) G-P(sol) polarization free energy of solvation -80.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds