Wall clock time and date at job start Wed Apr 1 2020 01:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00565 * 2 1 4 4 H 1.09005 * 109.47156 * 29.99829 * 3 2 1 5 5 C 1.53005 * 109.47470 * 270.00130 * 3 2 1 6 6 C 1.50692 * 109.47414 * 149.99662 * 3 2 1 7 7 O 1.21285 * 120.00131 * 4.72770 * 6 3 2 8 8 N 1.34782 * 120.00376 * 185.00264 * 6 3 2 9 9 C 1.46919 * 120.62623 * 356.36890 * 8 6 3 10 10 C 1.53198 * 108.77694 * 126.37084 * 9 8 6 11 11 C 1.53036 * 109.30939 * 54.63251 * 10 9 8 12 12 H 1.08999 * 109.46349 * 58.66027 * 11 10 9 13 13 C 1.53009 * 109.45485 * 178.61649 * 11 10 9 14 14 C 1.53041 * 109.53806 * 298.63393 * 11 10 9 15 15 C 1.46923 * 120.63177 * 176.08977 * 8 6 3 16 16 H 1.09003 * 109.58394 * 113.84488 * 15 8 6 17 17 C 1.53004 * 109.58777 * 353.41619 * 15 8 6 18 18 N 1.46900 * 109.46927 * 181.75951 * 17 15 8 19 19 C 1.46898 * 110.99541 * 184.91120 * 18 17 15 20 20 C 1.50705 * 109.46903 * 180.02562 * 19 18 17 21 21 O 1.21294 * 120.00111 * 0.02562 * 20 19 18 22 22 N 1.34770 * 120.00322 * 180.02562 * 20 19 18 23 23 C 1.37098 * 120.00675 * 180.02562 * 22 20 19 24 24 H 1.08007 * 119.99334 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00454 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99997 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99847 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47101 * 60.00301 * 27 25 23 29 29 H 1.48505 * 109.46778 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47008 * 300.00274 * 27 25 23 31 31 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47282 * 300.00410 * 1 2 3 33 33 H 1.09010 * 109.46803 * 59.99942 * 1 2 3 34 34 H 1.08998 * 109.46345 * 300.00021 * 5 3 2 35 35 H 1.09003 * 109.46717 * 59.99265 * 5 3 2 36 36 H 1.08996 * 109.46909 * 179.97438 * 5 3 2 37 37 H 1.09006 * 109.58699 * 246.15669 * 9 8 6 38 38 H 1.08996 * 109.59206 * 6.43566 * 9 8 6 39 39 H 1.08997 * 109.49502 * 174.58470 * 10 9 8 40 40 H 1.08997 * 109.49522 * 294.68090 * 10 9 8 41 41 H 1.08994 * 109.46918 * 60.00068 * 13 11 10 42 42 H 1.09004 * 109.46811 * 179.97438 * 13 11 10 43 43 H 1.08993 * 109.47016 * 299.99890 * 13 11 10 44 44 H 1.09001 * 109.49723 * 181.32062 * 14 11 10 45 45 H 1.08998 * 109.50293 * 301.41711 * 14 11 10 46 46 H 1.08995 * 109.47007 * 301.76245 * 17 15 8 47 47 H 1.08995 * 109.46676 * 61.76417 * 17 15 8 48 48 H 1.00901 * 111.00081 * 308.87177 * 18 17 15 49 49 H 1.08991 * 109.47817 * 300.00027 * 19 18 17 50 50 H 1.09001 * 109.46832 * 60.00932 * 19 18 17 51 51 H 0.97001 * 119.99867 * 359.97438 * 22 20 19 52 52 H 0.96996 * 120.00011 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7714 -1.4425 6 6 3.3386 1.2638 0.7104 7 8 3.7873 0.2049 1.0959 8 7 4.0255 2.4038 0.9225 9 6 3.5313 3.6840 0.3977 10 6 3.4501 4.6907 1.5497 11 6 4.8122 4.7789 2.2417 12 1 5.5683 5.0831 1.5180 13 6 4.7443 5.8090 3.3711 14 6 5.1815 3.4112 2.8207 15 6 5.2796 2.3909 1.6879 16 1 6.1101 2.6547 1.0331 17 6 5.5080 0.9964 2.2747 18 7 6.7404 0.9975 3.0741 19 6 7.0550 -0.3533 3.5582 20 6 8.3222 -0.3126 4.3728 21 8 8.9057 0.7384 4.5345 22 7 8.8073 -1.4439 4.9215 23 6 9.9599 -1.4068 5.6630 24 1 10.4789 -0.4708 5.8077 25 6 10.4596 -2.5732 6.2292 26 7 9.8278 -3.7119 6.0535 27 14 12.0297 -2.5223 7.2401 28 1 11.8431 -1.6124 8.3988 29 1 12.3481 -3.8881 7.7287 30 1 13.1460 -2.0263 6.3959 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 2.8830 1.0773 -1.9563 35 1 1.2570 1.8014 -1.9563 36 1 2.6608 2.7672 -1.4424 37 1 4.2164 4.0555 -0.3645 38 1 2.5421 3.5431 -0.0376 39 1 3.1769 5.6705 1.1579 40 1 2.6980 4.3627 2.2671 41 1 3.9879 5.5054 4.0947 42 1 5.7142 5.8716 3.8645 43 1 4.4824 6.7833 2.9588 44 1 6.1408 3.4803 3.3336 45 1 4.4132 3.0951 3.5262 46 1 4.6637 0.7263 2.9088 47 1 5.6007 0.2725 1.4652 48 1 7.5115 1.3823 2.5493 49 1 6.2361 -0.7168 4.1789 50 1 7.1907 -1.0215 2.7078 51 1 8.3405 -2.2844 4.7925 52 1 10.1769 -4.5262 6.4484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656522964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:50 Heat of formation + Delta-G solvation = -99.769051 kcal Electronic energy + Delta-G solvation = -31023.030388 eV Core-core repulsion = 26830.315907 eV Total energy + Delta-G solvation = -4192.714480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02914 -38.64816 -38.08801 -37.42520 -35.46540 -34.36261 -33.77935 -32.33281 -31.15497 -30.86392 -28.70326 -27.20850 -27.01902 -25.26582 -24.54863 -23.71609 -22.92189 -21.65318 -20.52571 -19.55790 -19.00830 -17.79296 -17.51450 -17.02281 -16.42616 -15.87016 -15.53978 -15.45059 -15.13419 -14.97843 -14.65950 -14.58687 -14.30635 -14.02451 -13.85810 -13.66746 -13.54627 -13.38279 -13.12454 -12.97990 -12.67574 -12.60341 -12.21586 -12.09812 -11.99544 -11.96681 -11.68490 -11.53847 -11.42711 -11.36012 -11.10335 -11.08293 -10.91999 -10.64916 -10.45960 -10.38206 -10.20970 -10.13225 -9.41567 -9.32364 -8.79285 -8.29482 -7.88007 -7.72870 -6.32885 -3.73617 2.40531 2.45727 3.25877 3.30674 3.35320 3.48768 4.02851 4.10445 4.22425 4.32469 4.45708 4.49063 4.54026 4.60181 4.64472 4.82758 4.89407 4.97535 4.99331 5.01314 5.10717 5.17589 5.25868 5.30121 5.31835 5.33364 5.35880 5.41319 5.48122 5.59671 5.63076 5.67700 5.71269 5.88440 5.96636 5.99088 6.04459 6.14992 6.18059 6.26504 6.37391 6.40659 6.54934 6.68935 7.15514 7.41123 7.62861 7.83918 8.05789 8.15625 8.71373 9.26599 9.64813 10.16731 10.85022 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.002405 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.765719 B =11639.256256 C =13356.992368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.069 3.931 4 H 0.084 0.916 5 C -0.181 4.181 6 C 0.512 3.488 7 O -0.504 6.504 8 N -0.606 5.606 9 C 0.099 3.901 10 C -0.131 4.131 11 C -0.095 4.095 12 H 0.071 0.929 13 C -0.146 4.146 14 C -0.117 4.117 15 C 0.151 3.849 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.674 5.674 19 C 0.057 3.943 20 C 0.444 3.556 21 O -0.585 6.585 22 N -0.565 5.565 23 C -0.298 4.298 24 H 0.102 0.898 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.342 0.658 49 H 0.084 0.916 50 H 0.043 0.957 51 H 0.393 0.607 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 16.071 -15.698 30.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.007 3.993 4 H 0.101 0.899 5 C -0.239 4.239 6 C 0.299 3.701 7 O -0.378 6.378 8 N -0.342 5.342 9 C -0.024 4.024 10 C -0.170 4.170 11 C -0.114 4.114 12 H 0.089 0.911 13 C -0.203 4.203 14 C -0.155 4.155 15 C 0.048 3.952 16 H 0.089 0.911 17 C -0.063 4.063 18 N -0.308 5.308 19 C -0.076 4.076 20 C 0.229 3.771 21 O -0.469 6.469 22 N -0.202 5.202 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.200 1.200 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.161 0.839 49 H 0.102 0.898 50 H 0.061 0.939 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.657 15.986 -14.733 29.989 hybrid contribution 0.433 -0.700 -0.395 0.913 sum -20.224 15.285 -15.128 29.521 Atomic orbital electron populations 1.22886 0.80630 1.03373 0.99889 1.88072 1.19614 1.24980 1.94889 1.21949 0.93810 0.86846 0.96648 0.89852 1.22487 1.03575 1.02606 0.95210 1.20379 0.85972 0.83941 0.79817 1.90801 1.67667 1.29977 1.49346 1.48103 1.24420 1.06894 1.54785 1.22030 1.00224 0.83639 0.96463 1.22024 0.98424 0.98815 0.97692 1.21173 0.96521 0.96012 0.97661 0.91102 1.21800 1.02348 0.97968 0.98178 1.21901 1.04043 0.92458 0.97115 1.21238 0.84390 0.97169 0.92354 0.91101 1.22561 0.93204 0.93847 0.96673 1.60145 1.05933 1.21621 1.43069 1.21574 0.97694 0.89959 0.98391 1.19873 0.87292 0.84862 0.85058 1.90499 1.61670 1.30319 1.64451 1.41866 1.23968 1.08535 1.45857 1.19648 1.00743 0.95980 1.26422 0.88035 1.25258 0.99603 0.94758 0.98424 1.69612 1.40261 0.99008 1.45536 0.85924 0.81379 0.77061 0.79863 1.19931 1.21029 1.19974 0.89038 0.93843 0.93930 0.90898 0.91256 0.90155 0.90926 0.89291 0.90742 0.91412 0.92747 0.92160 0.92975 0.88773 0.91588 0.90457 0.92285 0.83918 0.89753 0.93911 0.77426 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.03 9.88 -55.10 -0.54 -4.57 16 3 C 0.07 0.62 2.31 -27.88 -0.06 0.55 16 4 H 0.08 0.54 7.25 -51.93 -0.38 0.17 16 5 C -0.18 -1.15 9.07 37.16 0.34 -0.81 16 6 C 0.51 6.23 7.00 -10.99 -0.08 6.16 16 7 O -0.50 -8.37 12.01 -14.31 -0.17 -8.54 16 8 N -0.61 -6.07 2.98 -165.47 -0.49 -6.57 16 9 C 0.10 0.61 5.06 -3.71 -0.02 0.59 16 10 C -0.13 -0.82 5.36 -26.61 -0.14 -0.96 16 11 C -0.10 -0.78 2.68 -90.58 -0.24 -1.02 16 12 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 13 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 14 C -0.12 -1.31 4.36 -26.83 -0.12 -1.43 16 15 C 0.15 1.81 3.08 -67.82 -0.21 1.60 16 16 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 17 C 0.07 1.02 3.58 -3.82 -0.01 1.00 16 18 N -0.67 -12.00 5.45 -115.06 -0.63 -12.63 16 19 C 0.06 1.13 6.16 -4.97 -0.03 1.10 16 20 C 0.44 11.13 7.82 -10.99 -0.09 11.04 16 21 O -0.59 -16.45 15.78 5.55 0.09 -16.36 16 22 N -0.57 -15.15 5.29 -10.96 -0.06 -15.21 16 23 C -0.30 -8.65 9.68 -14.93 -0.14 -8.79 16 24 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -25.55 13.05 55.50 0.72 -24.82 16 27 Si 0.93 21.73 29.55 -169.99 -5.02 16.71 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.04 0.21 7.87 -51.92 -0.41 -0.20 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 36 H 0.08 0.36 5.15 -51.93 -0.27 0.09 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.37 4.43 -51.93 -0.23 0.14 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 1.25 7.76 -51.93 -0.40 0.84 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.33 7.19 -51.93 -0.37 0.96 16 47 H 0.06 1.02 6.28 -51.93 -0.33 0.69 16 48 H 0.34 6.11 8.37 -39.29 -0.33 5.78 16 49 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 50 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.39 10.16 7.90 -40.82 -0.32 9.84 16 52 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -35.01 406.45 -8.32 -43.34 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -8.87 Total: 12.54 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 0.53 Total: 10.00 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.45 Total: -59.23 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.63 Total: -29.47 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.01 -8.32 -43.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656522964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.433 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds