Wall clock time and date at job start Wed Apr 1 2020 01:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00292 * 2 1 4 4 C 1.52999 * 109.47519 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46768 * 59.99771 * 4 3 2 6 6 C 1.52995 * 109.47028 * 299.99907 * 4 3 2 7 7 C 1.50698 * 109.47004 * 179.97438 * 4 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 H 1.09002 * 110.27509 * 327.36235 * 10 9 7 12 12 C 1.54598 * 110.31053 * 89.56214 * 10 9 7 13 13 C 1.54939 * 102.92085 * 96.95852 * 12 10 9 14 14 N 1.48532 * 103.22757 * 37.41430 * 13 12 10 15 15 C 1.46899 * 111.00176 * 200.27921 * 14 13 12 16 16 C 1.50701 * 109.47083 * 307.40035 * 15 14 13 17 17 O 1.21296 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00213 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00294 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99825 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00179 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00202 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99937 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47130 * 60.00401 * 23 21 19 25 25 H 1.48508 * 109.47094 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47623 * 300.00395 * 23 21 19 27 27 C 1.47904 * 105.82154 * 320.79381 * 14 13 12 28 28 H 1.09000 * 109.91666 * 265.97305 * 27 14 13 29 29 C 1.52998 * 110.08207 * 144.77515 * 27 14 13 30 30 H 1.08995 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47403 * 300.00085 * 1 2 3 32 32 H 1.09001 * 109.47457 * 59.99899 * 1 2 3 33 33 H 1.09000 * 109.47055 * 59.99367 * 3 2 1 34 34 H 1.09007 * 109.46875 * 300.00378 * 3 2 1 35 35 H 1.09001 * 109.47038 * 180.02562 * 5 4 3 36 36 H 1.08995 * 109.47475 * 299.99715 * 5 4 3 37 37 H 1.09001 * 109.47406 * 60.00127 * 5 4 3 38 38 H 1.08995 * 109.47139 * 300.00141 * 6 4 3 39 39 H 1.09003 * 109.47199 * 59.99964 * 6 4 3 40 40 H 1.09001 * 109.46983 * 179.97438 * 6 4 3 41 41 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 42 42 H 1.08995 * 110.72320 * 215.31366 * 12 10 9 43 43 H 1.08992 * 110.71992 * 338.60299 * 12 10 9 44 44 H 1.09005 * 110.66523 * 278.98422 * 13 12 10 45 45 H 1.08997 * 110.66672 * 155.84748 * 13 12 10 46 46 H 1.09000 * 109.47154 * 67.39860 * 15 14 13 47 47 H 1.09001 * 109.47222 * 187.39881 * 15 14 13 48 48 H 0.97003 * 119.99654 * 0.02562 * 18 16 15 49 49 H 0.96999 * 120.00088 * 179.97438 * 22 21 19 50 50 H 1.09006 * 109.47291 * 302.30942 * 29 27 14 51 51 H 1.09001 * 109.47429 * 62.31192 * 29 27 14 52 52 H 1.08992 * 109.47358 * 182.31216 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9863 0.4256 -1.2502 6 6 3.9874 0.4252 1.2483 7 6 4.1483 2.5614 -0.0013 8 8 3.4355 3.5426 -0.0008 9 7 5.4887 2.7022 -0.0014 10 6 6.0846 4.0406 -0.0081 11 1 5.4519 4.7329 -0.5634 12 6 6.2920 4.5428 1.4393 13 6 7.7782 4.2020 1.7146 14 7 8.4364 4.4743 0.4112 15 6 9.7249 3.7753 0.3159 16 6 10.5657 4.1049 1.5224 17 8 10.1341 4.8494 2.3773 18 7 11.7971 3.5726 1.6515 19 6 12.5622 3.8729 2.7488 20 1 12.1782 4.5364 3.5095 21 6 13.8315 3.3236 2.8821 22 7 14.2989 2.5167 1.9562 23 14 14.8742 3.7333 4.3768 24 1 14.1653 3.3015 5.6083 25 1 16.1765 3.0260 4.2809 26 1 15.1100 5.1986 4.4295 27 6 7.4953 3.9945 -0.6239 28 1 7.7440 2.9715 -0.9064 29 6 7.5575 4.9039 -1.8527 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 5.0729 0.3391 -1.2505 36 1 3.5431 -0.5702 -1.2502 37 1 3.6643 0.9666 -2.1400 38 1 3.6661 0.9660 2.1384 39 1 3.5441 -0.5706 1.2483 40 1 5.0740 0.3388 1.2476 41 1 6.0589 1.9175 -0.0014 42 1 6.1249 5.6180 1.5021 43 1 5.6395 4.0089 2.1300 44 1 7.8878 3.1528 1.9890 45 1 8.1834 4.8487 2.4927 46 1 9.5527 2.6998 0.2760 47 1 10.2451 4.0938 -0.5875 48 1 12.1424 2.9776 0.9676 49 1 15.1852 2.1336 2.0491 50 1 7.3270 5.9280 -1.5589 51 1 8.5585 4.8658 -2.2826 52 1 6.8316 4.5659 -2.5921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656975364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:37 Heat of formation + Delta-G solvation = -116.083415 kcal Electronic energy + Delta-G solvation = -30896.571842 eV Core-core repulsion = 26703.149918 eV Total energy + Delta-G solvation = -4193.421924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75089 -39.37822 -38.20158 -37.54443 -35.17592 -34.41059 -33.79039 -31.43804 -31.15767 -30.75719 -27.77680 -27.66930 -26.52959 -25.91743 -25.36904 -24.11968 -22.88540 -21.09882 -20.46487 -19.38456 -19.18296 -17.91288 -17.40643 -16.83893 -16.23019 -16.02523 -15.87330 -15.59393 -15.31309 -14.84003 -14.79525 -14.54254 -14.28602 -13.97547 -13.79894 -13.69324 -13.50005 -13.41507 -12.92251 -12.60945 -12.56406 -12.42528 -12.22319 -12.18792 -11.95562 -11.82799 -11.66858 -11.46409 -11.43178 -11.34073 -11.12708 -11.09128 -11.06364 -10.86379 -10.61837 -10.44740 -10.24612 -10.00528 -9.85675 -9.51777 -9.17696 -8.42515 -8.05315 -7.93212 -6.45139 -3.86077 2.41969 2.75569 3.17647 3.23864 3.28064 3.56577 3.85373 4.02885 4.21233 4.28768 4.43574 4.47087 4.54783 4.75258 4.82162 4.97994 4.98998 5.01269 5.13803 5.21998 5.24759 5.26154 5.30296 5.32991 5.33647 5.42524 5.46901 5.51499 5.53700 5.58278 5.64184 5.71943 5.83600 5.88555 5.90962 5.92375 5.97020 6.02788 6.19444 6.20941 6.31079 6.41996 6.68601 6.76935 7.18540 7.24439 7.31105 7.51972 8.00144 8.02176 8.57739 9.14360 9.49771 10.01441 10.72357 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.002140 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.665051 B =13079.560788 C =13656.612825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.086 3.914 4 C -0.081 4.081 5 C -0.137 4.137 6 C -0.138 4.138 7 C 0.528 3.472 8 O -0.541 6.541 9 N -0.717 5.717 10 C 0.136 3.864 11 H 0.100 0.900 12 C -0.134 4.134 13 C 0.039 3.961 14 N -0.488 5.488 15 C 0.038 3.962 16 C 0.441 3.559 17 O -0.580 6.580 18 N -0.561 5.561 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.054 3.946 28 H 0.054 0.946 29 C -0.132 4.132 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.399 0.601 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.034 0.966 45 H 0.120 0.880 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.814 -6.570 -8.387 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.009 3.991 4 C -0.084 4.084 5 C -0.194 4.194 6 C -0.195 4.195 7 C 0.314 3.686 8 O -0.418 6.418 9 N -0.368 5.368 10 C 0.032 3.968 11 H 0.118 0.882 12 C -0.173 4.173 13 C -0.088 4.088 14 N -0.213 5.213 15 C -0.094 4.094 16 C 0.227 3.773 17 O -0.465 6.465 18 N -0.197 5.197 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.055 4.055 28 H 0.072 0.928 29 C -0.190 4.190 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.234 0.766 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.138 0.862 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.225 0.775 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.078 0.922 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.170 -5.066 -7.889 24.071 hybrid contribution 0.874 -1.325 0.314 1.618 sum -21.295 -6.392 -7.575 23.489 Atomic orbital electron populations 1.22726 0.80789 1.02680 1.00148 1.87794 1.19742 1.27740 1.95512 1.22209 0.91113 0.84194 1.01576 1.20719 0.95151 0.93335 0.99182 1.21800 1.01315 1.01108 0.95180 1.21807 1.01396 1.01084 0.95218 1.20298 0.82390 0.90558 0.75389 1.90704 1.60990 1.40531 1.49530 1.46140 1.06517 1.09179 1.74952 1.21946 0.93623 0.83675 0.97604 0.88243 1.22975 0.97197 1.02061 0.95057 1.23496 0.91484 1.00216 0.93568 1.64589 1.01156 1.53035 1.02516 1.22095 0.91526 0.96254 0.99501 1.19684 0.83530 0.85635 0.88462 1.90444 1.71902 1.40004 1.44106 1.41840 1.13168 1.42569 1.22121 1.19649 0.96280 1.27081 0.99930 0.87926 1.25266 0.97447 0.96379 0.98803 1.69599 1.19085 1.31387 1.34150 0.85915 0.78541 0.78716 0.81034 1.19910 1.20970 1.19861 1.22705 0.91013 0.97846 0.93950 0.92771 1.21706 1.01776 1.00184 0.95352 0.89561 0.94018 0.94048 0.92417 0.92472 0.92080 0.90407 0.92199 0.92113 0.90394 0.92020 0.76598 0.89986 0.91136 0.94749 0.86206 0.93521 0.89215 0.77472 0.91784 0.91526 0.92162 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.50 9.35 -35.23 -0.33 -3.83 16 3 C 0.09 0.82 4.09 37.16 0.15 0.97 16 4 C -0.08 -0.73 0.70 -155.66 -0.11 -0.84 16 5 C -0.14 -1.03 8.22 37.16 0.31 -0.73 16 6 C -0.14 -1.14 8.22 37.16 0.31 -0.83 16 7 C 0.53 6.00 6.48 -10.99 -0.07 5.93 16 8 O -0.54 -7.98 15.63 5.55 0.09 -7.89 16 9 N -0.72 -7.45 4.84 -52.49 -0.25 -7.70 16 10 C 0.14 1.65 2.98 -66.57 -0.20 1.45 16 11 H 0.10 1.29 7.10 -51.93 -0.37 0.92 16 12 C -0.13 -1.83 6.78 -24.87 -0.17 -2.00 16 13 C 0.04 0.65 5.30 -1.90 -0.01 0.64 16 14 N -0.49 -7.83 4.90 -224.00 -1.10 -8.93 16 15 C 0.04 0.65 5.52 -4.98 -0.03 0.63 16 16 C 0.44 10.09 7.49 -10.98 -0.08 10.01 16 17 O -0.58 -14.99 13.10 5.54 0.07 -14.92 16 18 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 19 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 23 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.05 0.67 2.85 -66.64 -0.19 0.48 16 28 H 0.05 0.61 7.05 -51.93 -0.37 0.25 16 29 C -0.13 -1.48 9.32 37.16 0.35 -1.13 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 34 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.06 0.40 7.57 -51.93 -0.39 0.00 16 36 H 0.08 0.58 7.68 -51.93 -0.40 0.18 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.62 7.68 -51.93 -0.40 0.22 16 40 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 41 H 0.40 3.48 7.17 -40.82 -0.29 3.18 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 44 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 45 H 0.12 2.39 5.97 -51.93 -0.31 2.08 16 46 H 0.05 0.73 7.81 -51.93 -0.41 0.32 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 49 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 413.85 15.07 6.24 6.24 Total: -1.00 -31.57 413.85 -7.58 -39.16 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -9.06 Total: 11.39 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 1.12 Total: 8.07 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.69 Total: -53.98 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.17 Total: -26.65 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.57 -7.58 -39.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656975364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.928 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds