Wall clock time and date at job start Wed Apr 1 2020 00:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47395 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46833 * 300.00266 * 5 4 3 7 7 C 1.53005 * 109.47059 * 59.99585 * 5 4 3 8 8 C 1.50698 * 109.47552 * 179.97438 * 5 4 3 9 9 O 1.21281 * 119.99818 * 359.97438 * 8 5 4 10 10 N 1.34768 * 120.00172 * 180.02562 * 8 5 4 11 11 C 1.46503 * 120.00171 * 180.02562 * 10 8 5 12 12 H 1.09005 * 112.84542 * 336.19129 * 11 10 8 13 13 C 1.53777 * 113.61833 * 107.49581 * 11 10 8 14 14 C 1.53778 * 87.07907 * 89.12030 * 13 11 10 15 15 H 1.09009 * 113.69243 * 270.87335 * 14 13 11 16 16 N 1.46898 * 113.61657 * 139.98118 * 14 13 11 17 17 C 1.46907 * 110.99876 * 107.49979 * 16 14 13 18 18 C 1.50707 * 109.47005 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99842 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99782 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99502 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00282 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99707 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99752 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99793 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46889 * 90.00299 * 25 23 21 27 27 H 1.48501 * 109.46665 * 210.00025 * 25 23 21 28 28 H 1.48494 * 109.47242 * 330.00056 * 25 23 21 29 29 C 1.53779 * 113.61440 * 204.99966 * 11 10 8 30 30 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 33 33 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 34 34 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 35 35 H 1.09000 * 109.46916 * 299.99948 * 4 3 2 36 36 H 1.09003 * 109.47336 * 59.99762 * 4 3 2 37 37 H 1.09000 * 109.47524 * 59.99600 * 6 5 4 38 38 H 1.09001 * 109.47090 * 180.02562 * 6 5 4 39 39 H 1.09003 * 109.46832 * 299.99483 * 6 5 4 40 40 H 1.09007 * 109.46740 * 60.00492 * 7 5 4 41 41 H 1.09001 * 109.46928 * 180.02562 * 7 5 4 42 42 H 1.08992 * 109.47349 * 300.00571 * 7 5 4 43 43 H 0.97002 * 120.00273 * 359.97438 * 10 8 5 44 44 H 1.08999 * 113.61471 * 203.66199 * 13 11 10 45 45 H 1.08997 * 113.61541 * 334.57136 * 13 11 10 46 46 H 1.00907 * 111.00279 * 231.45285 * 16 14 13 47 47 H 1.08994 * 109.47173 * 300.00305 * 17 16 14 48 48 H 1.09004 * 109.47225 * 60.00402 * 17 16 14 49 49 H 0.96996 * 120.00304 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99810 * 179.97438 * 24 23 21 51 51 H 1.08996 * 113.61521 * 25.42592 * 29 11 10 52 52 H 1.09003 * 113.61377 * 156.24425 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 3.7068 3.3408 -1.2499 7 6 3.7058 3.3424 1.2486 8 6 5.6601 2.4634 0.0013 9 8 6.1817 1.3685 0.0030 10 7 6.4240 3.5737 0.0015 11 6 7.8844 3.4580 0.0022 12 1 8.2336 2.5085 0.4079 13 6 8.5327 3.8315 -1.3414 14 6 8.5937 5.2771 -0.8204 15 1 7.7016 5.8618 -1.0453 16 7 9.8373 5.9766 -1.1699 17 6 9.5985 6.9874 -2.2088 18 6 10.8938 7.6830 -2.5400 19 8 11.9154 7.3673 -1.9673 20 7 10.9170 8.6557 -3.4725 21 6 12.0955 9.2880 -3.7742 22 1 13.0052 9.0064 -3.2649 23 6 12.1196 10.2906 -4.7360 24 7 11.0127 10.6329 -5.3561 25 14 13.7251 11.1527 -5.1465 26 1 14.4106 10.4255 -6.2449 27 1 13.4430 12.5460 -5.5758 28 1 14.5979 11.1718 -3.9453 29 6 8.5991 4.6825 0.5978 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.6887 1.8463 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.8567 0.6439 0.8909 36 1 3.8575 0.6435 -0.8891 37 1 2.6202 3.4269 -1.2504 38 1 4.1505 4.3364 -1.2506 39 1 4.0288 2.7993 -2.1394 40 1 4.0272 2.8021 2.1391 41 1 4.1489 4.3384 1.2479 42 1 2.6193 3.4285 1.2481 43 1 6.0069 4.4494 0.0005 44 1 9.5132 3.3805 -1.4934 45 1 7.8694 3.7033 -2.1968 46 1 10.2611 6.3906 -0.3531 47 1 9.2064 6.5035 -3.1033 48 1 8.8766 7.7187 -1.8452 49 1 10.1002 8.9079 -3.9308 50 1 11.0294 11.3331 -6.0273 51 1 7.9894 5.2413 1.3079 52 1 9.5972 4.4638 0.9773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661491324.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:13 Heat of formation + Delta-G solvation = -107.978073 kcal Electronic energy + Delta-G solvation = -29409.433768 eV Core-core repulsion = 25216.363318 eV Total energy + Delta-G solvation = -4193.070450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86225 -39.25938 -38.32308 -37.96418 -36.13952 -34.61355 -33.82963 -32.44521 -31.20148 -29.89007 -27.91155 -26.96135 -26.69337 -25.80486 -25.18773 -24.35099 -23.04192 -22.02723 -19.59366 -19.51039 -19.10692 -17.89266 -17.54999 -16.81683 -16.50023 -16.28353 -16.04278 -15.46883 -15.29657 -15.21946 -15.09468 -14.60308 -14.37972 -14.22922 -14.18574 -14.03506 -13.70834 -13.38256 -13.23338 -12.92540 -12.53381 -12.46584 -12.41271 -12.14694 -12.04003 -11.93224 -11.84274 -11.62759 -11.57434 -11.36968 -11.27529 -11.22389 -11.05195 -10.62338 -10.53580 -10.40117 -10.22248 -10.04845 -9.91602 -9.51855 -9.24003 -8.45453 -8.08886 -7.96896 -6.42807 -3.83554 2.36993 2.75819 3.17366 3.25982 3.31823 3.36354 3.89867 4.10448 4.13638 4.31100 4.33611 4.36149 4.39365 4.47536 4.69228 4.73768 4.76278 4.84490 4.91410 4.93808 4.96032 4.99228 5.07234 5.19055 5.22264 5.25342 5.25405 5.27570 5.39150 5.42305 5.52857 5.57218 5.63755 5.71202 5.76447 5.80476 5.86152 5.89581 5.90436 6.03135 6.08763 6.24980 6.44269 6.72737 7.22535 7.26221 7.54303 7.64670 7.97176 8.05466 8.60256 9.16963 9.53305 10.04774 10.74934 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.001573 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.299068 B =17796.944269 C =18518.719121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.058 3.942 4 C -0.095 4.095 5 C -0.078 4.078 6 C -0.147 4.147 7 C -0.146 4.146 8 C 0.527 3.473 9 O -0.534 6.534 10 N -0.709 5.709 11 C 0.117 3.883 12 H 0.105 0.895 13 C -0.135 4.135 14 C 0.060 3.940 15 H 0.068 0.932 16 N -0.655 5.655 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.148 4.148 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.399 0.601 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.351 0.649 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.070 0.930 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.337 -14.106 11.872 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.018 4.018 4 C -0.133 4.133 5 C -0.082 4.082 6 C -0.204 4.204 7 C -0.203 4.203 8 C 0.313 3.687 9 O -0.410 6.410 10 N -0.360 5.360 11 C 0.012 3.988 12 H 0.123 0.877 13 C -0.175 4.175 14 C -0.051 4.051 15 H 0.086 0.914 16 N -0.287 5.287 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.186 4.186 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.234 0.766 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.171 0.829 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.961 -15.592 11.672 29.354 hybrid contribution -0.672 2.145 -0.208 2.257 sum -22.632 -13.448 11.464 28.714 Atomic orbital electron populations 1.22747 0.80982 1.02849 0.99938 1.87889 1.19687 1.28052 1.95405 1.22713 0.94045 0.84711 1.00365 1.21279 0.92321 0.94720 1.04954 1.20712 0.91873 0.97508 0.98091 1.21971 1.02213 1.00070 0.96139 1.21964 1.02231 0.99976 0.96131 1.20396 0.88807 0.84206 0.75322 1.90720 1.74809 1.26577 1.48857 1.45699 1.06244 1.08894 1.75211 1.21783 0.79091 0.99810 0.98146 0.87713 1.23540 1.01652 0.95861 0.96407 1.23099 0.92228 0.94817 0.94957 0.91409 1.60217 1.23112 1.31331 1.14088 1.21732 0.96523 0.93456 0.96536 1.19830 0.89960 0.83481 0.84177 1.90524 1.34737 1.66816 1.54656 1.41865 1.11306 1.32142 1.34730 1.19714 0.88643 1.14936 1.19650 0.87914 1.25261 0.98693 0.97520 0.96437 1.69612 1.26892 1.31430 1.26416 0.85854 0.81303 0.78175 0.78944 1.20374 1.20946 1.19417 1.23605 1.01914 0.96473 0.96633 0.94103 0.89578 0.94048 0.92918 0.92994 0.90236 0.90169 0.91116 0.91753 0.91565 0.91685 0.91813 0.91131 0.76613 0.88103 0.91563 0.82895 0.89695 0.93983 0.77493 0.91888 0.91127 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.44 10.70 -35.23 -0.38 -3.81 16 3 C 0.06 0.39 5.23 37.16 0.19 0.59 16 4 C -0.09 -0.78 3.93 -26.73 -0.11 -0.89 16 5 C -0.08 -0.54 0.64 -155.66 -0.10 -0.64 16 6 C -0.15 -0.81 8.02 37.16 0.30 -0.51 16 7 C -0.15 -0.73 8.02 37.16 0.30 -0.43 16 8 C 0.53 5.25 6.48 -10.99 -0.07 5.18 16 9 O -0.53 -7.56 15.58 5.56 0.09 -7.48 16 10 N -0.71 -5.94 5.05 -53.02 -0.27 -6.21 16 11 C 0.12 1.17 4.32 -67.12 -0.29 0.87 16 12 H 0.10 1.19 7.46 -51.93 -0.39 0.80 16 13 C -0.13 -1.54 7.68 -25.92 -0.20 -1.74 16 14 C 0.06 0.67 4.02 -66.90 -0.27 0.41 16 15 H 0.07 0.69 7.87 -51.92 -0.41 0.29 16 16 N -0.66 -10.13 6.18 -107.12 -0.66 -10.79 16 17 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 18 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 19 O -0.58 -15.79 15.78 5.55 0.09 -15.71 16 20 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 C -0.15 -1.37 7.40 -25.92 -0.19 -1.56 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.30 6.43 -51.93 -0.33 -0.04 16 34 H 0.05 0.28 6.43 -51.93 -0.33 -0.05 16 35 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.30 6.43 -51.93 -0.33 -0.04 16 38 H 0.06 0.30 7.57 -51.93 -0.39 -0.09 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.06 0.25 7.56 -51.93 -0.39 -0.14 16 42 H 0.07 0.26 6.43 -51.93 -0.33 -0.07 16 43 H 0.40 2.44 7.54 -40.82 -0.31 2.14 16 44 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.35 5.56 8.25 -39.29 -0.32 5.24 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 48 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 49 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 419.34 15.07 6.32 6.32 Total: -1.00 -34.05 419.34 -7.72 -41.77 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -8.87 Total: 12.31 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 0.32 Total: 5.62 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.26 Total: -55.00 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.20 Total: -27.00 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.05 -7.72 -41.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661491324.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.209 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds