Wall clock time and date at job start Wed Apr 1 2020 00:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47395 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46833 * 300.00266 * 5 4 3 7 7 C 1.53005 * 109.47059 * 59.99585 * 5 4 3 8 8 C 1.50698 * 109.47552 * 179.97438 * 5 4 3 9 9 O 1.21281 * 119.99818 * 359.97438 * 8 5 4 10 10 N 1.34768 * 120.00172 * 180.02562 * 8 5 4 11 11 C 1.46503 * 120.00171 * 180.02562 * 10 8 5 12 12 H 1.09005 * 112.84542 * 336.19129 * 11 10 8 13 13 C 1.53777 * 113.61833 * 107.49581 * 11 10 8 14 14 C 1.53778 * 87.07907 * 89.12030 * 13 11 10 15 15 H 1.09009 * 113.69243 * 270.87335 * 14 13 11 16 16 N 1.46898 * 113.61657 * 139.98118 * 14 13 11 17 17 C 1.46907 * 110.99876 * 107.49979 * 16 14 13 18 18 C 1.50707 * 109.47005 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99842 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99782 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99502 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00282 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99707 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99752 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99793 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46889 * 90.00299 * 25 23 21 27 27 H 1.48501 * 109.46665 * 210.00025 * 25 23 21 28 28 H 1.48494 * 109.47242 * 330.00056 * 25 23 21 29 29 C 1.53779 * 113.61440 * 204.99966 * 11 10 8 30 30 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 33 33 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 34 34 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 35 35 H 1.09000 * 109.46916 * 299.99948 * 4 3 2 36 36 H 1.09003 * 109.47336 * 59.99762 * 4 3 2 37 37 H 1.09000 * 109.47524 * 59.99600 * 6 5 4 38 38 H 1.09001 * 109.47090 * 180.02562 * 6 5 4 39 39 H 1.09003 * 109.46832 * 299.99483 * 6 5 4 40 40 H 1.09007 * 109.46740 * 60.00492 * 7 5 4 41 41 H 1.09001 * 109.46928 * 180.02562 * 7 5 4 42 42 H 1.08992 * 109.47349 * 300.00571 * 7 5 4 43 43 H 0.97002 * 120.00273 * 359.97438 * 10 8 5 44 44 H 1.08999 * 113.61471 * 203.66199 * 13 11 10 45 45 H 1.08997 * 113.61541 * 334.57136 * 13 11 10 46 46 H 1.00907 * 111.00279 * 231.45285 * 16 14 13 47 47 H 1.08994 * 109.47173 * 300.00305 * 17 16 14 48 48 H 1.09004 * 109.47225 * 60.00402 * 17 16 14 49 49 H 0.96996 * 120.00304 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99810 * 179.97438 * 24 23 21 51 51 H 1.08996 * 113.61521 * 25.42592 * 29 11 10 52 52 H 1.09003 * 113.61377 * 156.24425 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 3.7068 3.3408 -1.2499 7 6 3.7058 3.3424 1.2486 8 6 5.6601 2.4634 0.0013 9 8 6.1817 1.3685 0.0030 10 7 6.4240 3.5737 0.0015 11 6 7.8844 3.4580 0.0022 12 1 8.2336 2.5085 0.4079 13 6 8.5327 3.8315 -1.3414 14 6 8.5937 5.2771 -0.8204 15 1 7.7016 5.8618 -1.0453 16 7 9.8373 5.9766 -1.1699 17 6 9.5985 6.9874 -2.2088 18 6 10.8938 7.6830 -2.5400 19 8 11.9154 7.3673 -1.9673 20 7 10.9170 8.6557 -3.4725 21 6 12.0955 9.2880 -3.7742 22 1 13.0052 9.0064 -3.2649 23 6 12.1196 10.2906 -4.7360 24 7 11.0127 10.6329 -5.3561 25 14 13.7251 11.1527 -5.1465 26 1 14.4106 10.4255 -6.2449 27 1 13.4430 12.5460 -5.5758 28 1 14.5979 11.1718 -3.9453 29 6 8.5991 4.6825 0.5978 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.6887 1.8463 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.8567 0.6439 0.8909 36 1 3.8575 0.6435 -0.8891 37 1 2.6202 3.4269 -1.2504 38 1 4.1505 4.3364 -1.2506 39 1 4.0288 2.7993 -2.1394 40 1 4.0272 2.8021 2.1391 41 1 4.1489 4.3384 1.2479 42 1 2.6193 3.4285 1.2481 43 1 6.0069 4.4494 0.0005 44 1 9.5132 3.3805 -1.4934 45 1 7.8694 3.7033 -2.1968 46 1 10.2611 6.3906 -0.3531 47 1 9.2064 6.5035 -3.1033 48 1 8.8766 7.7187 -1.8452 49 1 10.1002 8.9079 -3.9308 50 1 11.0294 11.3331 -6.0273 51 1 7.9894 5.2413 1.3079 52 1 9.5972 4.4638 0.9773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661491324.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:12 Heat of formation + Delta-G solvation = -134.631595 kcal Electronic energy + Delta-G solvation = -29410.589551 eV Core-core repulsion = 25216.363318 eV Total energy + Delta-G solvation = -4194.226234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64535 -40.32593 -39.70607 -38.83417 -36.80141 -36.13320 -35.41168 -33.52529 -33.16546 -30.43906 -28.47197 -28.30641 -27.15335 -26.69279 -26.27912 -25.55649 -24.06263 -22.80467 -21.13955 -20.33650 -20.15301 -19.86529 -18.16438 -17.91776 -17.38533 -17.00776 -16.91439 -16.81694 -16.40405 -16.16301 -16.11622 -15.90053 -15.57205 -15.50458 -15.03117 -14.75452 -14.71040 -14.61851 -14.12869 -13.71350 -13.52018 -13.45190 -13.36061 -13.25523 -13.05737 -12.87843 -12.83698 -12.63776 -12.52926 -12.41045 -12.32348 -12.11600 -12.11258 -11.84446 -11.77676 -11.52899 -11.48773 -11.45415 -10.71010 -10.54677 -10.32755 -10.05635 -10.01104 -9.29104 -8.46588 -5.95173 1.38306 1.42305 1.54783 1.59486 2.05326 2.05996 2.29658 2.86365 2.97312 3.21051 3.48671 3.52790 3.56745 3.65969 3.80712 3.84000 3.98805 4.13484 4.20315 4.23030 4.28387 4.31343 4.44400 4.48460 4.56059 4.56849 4.58184 4.60465 4.73696 4.77219 4.86278 4.87447 4.88168 4.89076 4.97091 4.97901 5.01053 5.08689 5.13585 5.15575 5.32487 5.34886 5.41268 5.57784 5.94076 6.17840 6.26672 6.45155 6.53649 6.60740 7.13082 7.23972 7.56869 8.12369 8.70714 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.001573 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.299068 B =17796.944269 C =18518.719121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.425 6.425 3 C 0.060 3.940 4 C -0.093 4.093 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.144 4.144 8 C 0.522 3.478 9 O -0.584 6.584 10 N -0.695 5.695 11 C 0.124 3.876 12 H 0.087 0.913 13 C -0.139 4.139 14 C 0.062 3.938 15 H 0.092 0.908 16 N -0.672 5.672 17 C 0.066 3.934 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.273 1.273 29 C -0.132 4.132 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.415 0.585 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.347 0.653 47 H 0.098 0.902 48 H 0.071 0.929 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.095 0.905 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.553 -12.454 12.231 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.345 6.345 3 C -0.015 4.015 4 C -0.131 4.131 5 C -0.073 4.073 6 C -0.203 4.203 7 C -0.201 4.201 8 C 0.310 3.690 9 O -0.463 6.463 10 N -0.347 5.347 11 C 0.018 3.982 12 H 0.105 0.895 13 C -0.179 4.179 14 C -0.048 4.048 15 H 0.110 0.890 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.171 4.171 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.252 0.748 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.167 0.833 47 H 0.116 0.884 48 H 0.089 0.911 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.114 0.886 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.228 -13.911 12.026 30.416 hybrid contribution 0.004 1.542 -0.310 1.573 sum -24.224 -12.369 11.715 29.615 Atomic orbital electron populations 1.22921 0.79364 1.03683 1.01085 1.87847 1.21607 1.29348 1.95664 1.22756 0.92481 0.84386 1.01921 1.21220 0.93984 0.95268 1.02618 1.20679 0.89285 0.97180 1.00160 1.22006 1.03627 1.00225 0.94423 1.21998 1.03607 1.00216 0.94285 1.21040 0.90250 0.83644 0.74102 1.90702 1.75919 1.28529 1.51188 1.45564 1.05453 1.09389 1.74257 1.21579 0.80019 0.99461 0.97188 0.89513 1.23515 1.00862 0.96351 0.97154 1.23214 0.91317 0.94043 0.96184 0.89027 1.60174 1.25645 1.30877 1.13800 1.21583 0.93108 0.94085 0.97849 1.20958 0.91738 0.82436 0.82513 1.90493 1.37085 1.67765 1.55748 1.41931 1.10760 1.32806 1.35523 1.19671 0.89037 1.16748 1.21058 0.90406 1.26014 1.01939 0.97488 0.95674 1.69666 1.28270 1.31648 1.26443 0.84944 0.77421 0.77603 0.78472 1.19807 1.19440 1.19762 1.23499 1.01970 0.95590 0.96001 0.92804 0.89083 0.92961 0.91397 0.91123 0.92413 0.92758 0.89097 0.90178 0.93078 0.92654 0.90062 0.89172 0.74773 0.90024 0.91777 0.83258 0.88370 0.91071 0.76951 0.91299 0.88627 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -7.22 10.70 -148.98 -1.59 -8.81 16 3 C 0.06 0.73 5.23 71.98 0.38 1.11 16 4 C -0.09 -1.55 3.93 30.59 0.12 -1.43 16 5 C -0.07 -0.87 0.64 -52.93 -0.03 -0.91 16 6 C -0.15 -1.25 8.02 71.98 0.58 -0.68 16 7 C -0.14 -1.04 8.02 71.98 0.58 -0.46 16 8 C 0.52 10.18 6.48 87.66 0.57 10.74 16 9 O -0.58 -17.28 15.58 -3.03 -0.05 -17.32 16 10 N -0.70 -10.42 5.05 -440.05 -2.22 -12.65 16 11 C 0.12 2.35 4.32 45.52 0.20 2.54 16 12 H 0.09 2.02 7.46 -2.38 -0.02 2.00 16 13 C -0.14 -3.09 7.68 31.12 0.24 -2.85 16 14 C 0.06 1.26 4.02 45.44 0.18 1.45 16 15 H 0.09 1.49 7.87 -2.38 -0.02 1.48 16 16 N -0.67 -19.88 6.18 -492.83 -3.05 -22.93 16 17 C 0.07 2.16 6.01 85.56 0.51 2.68 16 18 C 0.44 20.48 7.82 87.66 0.69 21.17 16 19 O -0.62 -34.47 15.78 -3.07 -0.05 -34.52 16 20 N -0.57 -29.12 5.29 -306.98 -1.62 -30.75 16 21 C -0.34 -19.02 9.68 84.04 0.81 -18.21 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.12 13.05 21.67 0.28 -48.84 16 25 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 29 C -0.13 -2.18 7.40 31.12 0.23 -1.95 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.07 0.60 6.43 -2.39 -0.02 0.59 16 34 H 0.07 0.58 6.43 -2.39 -0.02 0.56 16 35 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.09 0.44 6.43 -2.39 -0.02 0.43 16 38 H 0.08 0.45 7.57 -2.39 -0.02 0.43 16 39 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.08 0.32 7.56 -2.39 -0.02 0.30 16 42 H 0.09 0.33 6.43 -2.39 -0.02 0.32 16 43 H 0.41 3.66 7.54 -92.71 -0.70 2.96 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.35 10.67 8.25 -89.69 -0.74 9.93 16 47 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 48 H 0.07 1.95 8.13 -2.38 -0.02 1.93 16 49 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 50 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 51 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -76.65 419.34 -0.74 -77.39 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -1.23 Total: 39.11 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.76 Total: 14.56 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -6.61 Total: -115.15 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -1.69 Total: -60.66 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -76.65 -0.74 -77.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661491324.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.244 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds