Wall clock time and date at job start Wed Apr 1 2020 00:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 O 1.42901 * 109.47309 * 119.99971 * 2 1 3 5 5 C 1.42894 * 114.00281 * 149.99775 * 4 2 1 6 6 C 1.50700 * 109.47369 * 179.97438 * 5 4 2 7 7 O 1.21290 * 119.99822 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00453 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00555 * 180.27803 * 8 6 5 10 10 C 1.52999 * 109.47353 * 174.91086 * 9 8 6 11 11 H 1.08998 * 109.45922 * 174.43947 * 10 9 8 12 12 C 1.53036 * 109.46287 * 294.41570 * 10 9 8 13 13 C 1.53118 * 109.27724 * 179.19356 * 12 10 9 14 14 C 1.53116 * 109.16332 * 302.34866 * 13 12 10 15 15 C 1.53042 * 109.28002 * 57.65072 * 14 13 12 16 16 N 1.46841 * 109.52427 * 300.82366 * 15 14 13 17 17 C 1.46900 * 111.00420 * 185.83643 * 16 15 14 18 18 C 1.50702 * 109.46793 * 300.51263 * 17 16 15 19 19 O 1.21293 * 120.00421 * 354.68728 * 18 17 16 20 20 N 1.34781 * 119.99617 * 174.68356 * 18 17 16 21 21 C 1.37103 * 119.99465 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00279 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99679 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00203 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46746 * 60.00764 * 25 23 21 27 27 H 1.48498 * 109.47218 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47202 * 300.00766 * 25 23 21 29 29 H 1.09000 * 109.47090 * 300.00241 * 1 2 3 30 30 H 1.09004 * 109.46920 * 59.99881 * 1 2 3 31 31 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47683 * 240.00172 * 2 1 3 33 33 H 1.09005 * 109.46913 * 60.00064 * 3 2 1 34 34 H 1.08997 * 109.47487 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47147 * 300.00176 * 3 2 1 36 36 H 1.09003 * 109.47076 * 60.00551 * 5 4 2 37 37 H 1.08996 * 109.47736 * 300.00605 * 5 4 2 38 38 H 0.97008 * 119.99859 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47031 * 294.91715 * 9 8 6 40 40 H 1.09001 * 109.46580 * 54.91124 * 9 8 6 41 41 H 1.08993 * 109.50439 * 299.13978 * 12 10 9 42 42 H 1.09005 * 109.50000 * 59.22001 * 12 10 9 43 43 H 1.09003 * 109.52224 * 62.24972 * 13 12 10 44 44 H 1.08994 * 109.52319 * 182.37820 * 13 12 10 45 45 H 1.08999 * 109.50843 * 177.59683 * 14 13 12 46 46 H 1.09006 * 109.50592 * 297.67555 * 14 13 12 47 47 H 1.09003 * 109.45447 * 60.83658 * 15 14 13 48 48 H 1.08997 * 109.46408 * 180.80641 * 15 14 13 49 49 H 1.09004 * 109.46774 * 60.50988 * 17 16 15 50 50 H 1.08991 * 109.47733 * 180.50965 * 17 16 15 51 51 H 0.96995 * 120.00269 * 0.02562 * 20 18 17 52 52 H 0.97001 * 120.00668 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6699 -1.9978 2.2749 7 8 2.9497 -1.9276 3.2483 8 7 4.8308 -2.6788 2.3435 9 6 5.2207 -3.3384 3.5921 10 6 6.5046 -4.1394 3.3666 11 1 6.8486 -4.5490 4.3163 12 6 6.2269 -5.2833 2.3887 13 6 7.5189 -6.0696 2.1505 14 6 8.5945 -5.1194 1.6170 15 6 8.8036 -3.9802 2.6173 16 7 7.5395 -3.2584 2.8103 17 6 7.7335 -2.0740 3.6573 18 6 8.2690 -2.4991 5.0003 19 8 8.3785 -3.6779 5.2641 20 7 8.6263 -1.5693 5.9082 21 6 9.1130 -1.9561 7.1302 22 1 9.2104 -3.0058 7.3651 23 6 9.4818 -0.9976 8.0661 24 7 9.3638 0.2796 7.7802 25 14 10.1443 -1.5245 9.7313 26 1 11.3757 -2.3325 9.5410 27 1 10.4618 -0.3209 10.5411 28 1 9.1217 -2.3389 10.4357 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 4.0200 -0.5874 0.7125 37 1 3.1810 -2.0706 0.1987 38 1 5.4067 -2.7353 1.5648 39 1 5.3921 -2.5863 4.3622 40 1 4.4244 -4.0108 3.9117 41 1 5.4700 -5.9455 2.8088 42 1 5.8691 -4.8751 1.4434 43 1 7.8554 -6.5104 3.0889 44 1 7.3356 -6.8595 1.4221 45 1 9.5292 -5.6646 1.4857 46 1 8.2750 -4.7091 0.6590 47 1 9.1367 -4.3906 3.5706 48 1 9.5587 -3.2940 2.2337 49 1 8.4436 -1.3985 3.1802 50 1 6.7801 -1.5631 3.7915 51 1 8.5384 -0.6266 5.6975 52 1 9.6209 0.9488 8.4336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661852102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:25 Heat of formation + Delta-G solvation = -123.060793 kcal Electronic energy + Delta-G solvation = -31198.687801 eV Core-core repulsion = 27004.963315 eV Total energy + Delta-G solvation = -4193.724486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.20017 -39.35080 -38.09032 -37.36215 -34.61127 -34.12155 -33.00969 -32.91868 -31.31925 -31.13768 -28.32543 -27.50267 -27.31795 -25.61048 -24.54927 -22.73924 -21.58647 -21.33349 -20.68670 -19.59514 -19.01678 -17.88106 -17.21164 -17.17696 -16.24405 -15.96684 -15.73828 -15.37306 -15.25062 -14.76884 -14.61775 -14.26363 -14.08382 -14.04740 -13.86817 -13.59948 -13.35382 -13.16854 -12.98598 -12.75603 -12.67239 -12.45704 -12.22328 -12.07630 -11.82570 -11.70258 -11.65471 -11.54052 -11.32977 -11.15887 -10.98586 -10.64905 -10.55889 -10.47250 -10.28254 -10.18803 -10.05217 -9.87577 -9.67998 -9.47953 -9.27347 -8.86367 -8.02800 -7.49282 -6.47666 -3.89241 2.71575 2.82718 3.15001 3.22370 3.26212 3.77776 3.88877 4.12603 4.22533 4.57805 4.72472 4.82697 4.87127 4.89696 4.91930 4.97000 5.05135 5.06656 5.10657 5.18908 5.32204 5.39133 5.40482 5.43923 5.53498 5.56374 5.68178 5.70565 5.86494 5.87280 5.91132 5.94512 5.95327 5.99074 6.06305 6.15043 6.16036 6.19798 6.31193 6.37242 6.45209 6.61807 6.74134 6.92521 7.30487 7.38826 7.48598 7.67028 7.97817 8.35942 8.52246 9.10005 9.46072 9.95872 10.68697 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009622 B = 0.002905 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.364857 B = 9637.328775 C =11699.408832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.357 6.357 5 C 0.045 3.955 6 C 0.507 3.493 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.128 3.872 10 C 0.055 3.945 11 H 0.100 0.900 12 C -0.106 4.106 13 C -0.119 4.119 14 C -0.111 4.111 15 C 0.038 3.962 16 N -0.509 5.509 17 C 0.035 3.965 18 C 0.406 3.594 19 O -0.595 6.595 20 N -0.554 5.554 21 C -0.303 4.303 22 H 0.102 0.898 23 C 0.025 3.975 24 N -0.897 5.897 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.407 0.593 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.393 0.607 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 -2.714 -19.612 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.035 4.035 6 C 0.292 3.708 7 O -0.400 6.400 8 N -0.368 5.368 9 C 0.004 3.996 10 C -0.053 4.053 11 H 0.118 0.882 12 C -0.144 4.144 13 C -0.157 4.157 14 C -0.149 4.149 15 C -0.090 4.090 16 N -0.232 5.232 17 C -0.097 4.097 18 C 0.191 3.809 19 O -0.483 6.483 20 N -0.188 5.188 21 C -0.433 4.433 22 H 0.120 0.880 23 C -0.177 4.177 24 N -0.537 5.537 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.110 0.890 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.097 -3.096 -18.883 21.636 hybrid contribution 1.136 0.296 0.930 1.498 sum -8.960 -2.800 -17.953 20.259 Atomic orbital electron populations 1.21851 0.93394 1.02825 1.02588 1.22161 0.95272 0.92558 0.87907 1.22319 1.01670 0.96704 1.02749 1.88078 1.34720 1.69676 1.35087 1.22228 0.88110 0.97069 0.96083 1.20224 0.81592 0.79377 0.89616 1.90744 1.52089 1.59637 1.37569 1.45823 1.21456 1.53588 1.15897 1.21488 0.95850 0.96277 0.85955 1.22186 0.90347 0.92802 0.99976 0.88230 1.21569 0.97309 0.96238 0.99242 1.21542 0.95509 0.97576 1.01046 1.21538 0.98349 0.96244 0.98770 1.22301 0.90862 0.95464 1.00346 1.62418 1.08058 1.07484 1.45275 1.22130 1.02149 0.93986 0.91419 1.21015 0.85523 0.86940 0.87397 1.90393 1.60746 1.17224 1.79922 1.42053 1.54775 1.08422 1.13573 1.19654 1.38794 0.94702 0.90170 0.87991 1.25295 0.97493 0.94806 1.00153 1.69599 1.47640 0.99855 1.36645 0.85924 0.79385 0.77823 0.81143 1.19887 1.20884 1.19834 0.91563 0.91239 0.91943 0.92145 0.91513 0.92357 0.91619 0.90377 0.90567 0.75727 0.91298 0.91112 0.91908 0.91953 0.91861 0.92512 0.92144 0.92039 0.90488 0.91821 0.89463 0.89045 0.77397 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.56 37.16 0.36 -0.80 16 2 C 0.08 0.68 3.34 -26.73 -0.09 0.59 16 3 C -0.18 -1.38 9.53 37.16 0.35 -1.03 16 4 O -0.36 -4.48 9.52 -55.14 -0.52 -5.01 16 5 C 0.05 0.47 6.23 36.01 0.22 0.69 16 6 C 0.51 7.13 7.91 -10.99 -0.09 7.04 16 7 O -0.53 -10.03 16.50 -14.36 -0.24 -10.27 16 8 N -0.71 -8.78 5.01 -60.29 -0.30 -9.09 16 9 C 0.13 1.90 4.56 -4.04 -0.02 1.88 16 10 C 0.06 0.81 1.72 -67.72 -0.12 0.70 16 11 H 0.10 1.86 5.71 -51.93 -0.30 1.57 16 12 C -0.11 -1.25 5.26 -26.65 -0.14 -1.39 16 13 C -0.12 -1.40 6.00 -26.61 -0.16 -1.56 16 14 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 15 C 0.04 0.57 5.00 -3.83 -0.02 0.55 16 16 N -0.51 -7.38 4.04 -228.13 -0.92 -8.30 16 17 C 0.03 0.58 5.45 -4.98 -0.03 0.56 16 18 C 0.41 8.94 7.18 -10.98 -0.08 8.86 16 19 O -0.60 -14.51 11.22 5.55 0.06 -14.45 16 20 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 23 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.41 7.79 -51.93 -0.40 0.00 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 37 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.41 4.14 7.43 -40.82 -0.30 3.84 16 39 H 0.07 1.21 6.56 -51.93 -0.34 0.87 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.66 7.31 -51.93 -0.38 0.28 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.45 5.66 -51.93 -0.29 1.16 16 48 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 49 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.09 1.50 6.01 -51.93 -0.31 1.19 16 51 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 52 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -32.18 407.98 -9.23 -41.41 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -8.90 Total: 14.13 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.21 Total: 6.74 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.56 Total: -54.62 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.70 Total: -29.72 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.18 -9.23 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661852102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.651 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds