Wall clock time and date at job start Wed Apr 1 2020 00:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47249 * 2 1 4 4 O 1.42897 * 109.46859 * 119.99792 * 2 1 3 5 5 C 1.42899 * 114.00297 * 89.99697 * 4 2 1 6 6 C 1.50694 * 109.47605 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99966 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46912 * 184.97960 * 9 8 6 11 11 H 1.08998 * 109.45987 * 186.08978 * 10 9 8 12 12 C 1.53034 * 109.46496 * 66.12448 * 10 9 8 13 13 C 1.53123 * 109.27909 * 180.80553 * 12 10 9 14 14 C 1.53109 * 109.16093 * 57.65338 * 13 12 10 15 15 C 1.53040 * 109.27991 * 302.34323 * 14 13 12 16 16 N 1.46844 * 109.46249 * 306.06588 * 10 9 8 17 17 C 1.46897 * 111.00375 * 305.86132 * 16 10 9 18 18 C 1.50695 * 109.47222 * 164.00593 * 17 16 10 19 19 O 1.21297 * 120.00247 * 359.97438 * 18 17 16 20 20 N 1.34784 * 120.00083 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00078 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00205 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00109 * 180.27705 * 21 20 18 24 24 N 1.31418 * 120.00100 * 359.72252 * 23 21 20 25 25 Si 1.86804 * 120.00519 * 179.72751 * 23 21 20 26 26 H 1.48500 * 109.46477 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46922 * 119.99681 * 25 23 21 28 28 H 1.48497 * 109.47223 * 240.00030 * 25 23 21 29 29 H 1.09003 * 109.47316 * 300.00593 * 1 2 3 30 30 H 1.09005 * 109.47114 * 60.00064 * 1 2 3 31 31 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46907 * 239.99303 * 2 1 3 33 33 H 1.09000 * 109.46731 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46656 * 299.99928 * 3 2 1 35 35 H 1.09001 * 109.46990 * 59.99745 * 3 2 1 36 36 H 1.09000 * 109.46618 * 59.99885 * 5 4 2 37 37 H 1.09005 * 109.47463 * 300.00492 * 5 4 2 38 38 H 0.96995 * 120.00148 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.47293 * 64.97585 * 9 8 6 40 40 H 1.08998 * 109.46977 * 304.97426 * 9 8 6 41 41 H 1.09004 * 109.50489 * 300.74567 * 12 10 9 42 42 H 1.09003 * 109.50520 * 60.81902 * 12 10 9 43 43 H 1.08997 * 109.51666 * 177.56052 * 13 12 10 44 44 H 1.09006 * 109.51845 * 297.68059 * 13 12 10 45 45 H 1.09002 * 109.50540 * 62.28678 * 14 13 12 46 46 H 1.09002 * 109.50422 * 182.37110 * 14 13 12 47 47 H 1.08994 * 109.46618 * 299.16861 * 15 14 13 48 48 H 1.08997 * 109.46394 * 179.19755 * 15 14 13 49 49 H 1.09003 * 109.47446 * 44.00308 * 17 16 10 50 50 H 1.09005 * 109.46816 * 284.00195 * 17 16 10 51 51 H 0.97000 * 119.99563 * 0.02562 * 20 18 17 52 52 H 0.96991 * 120.00403 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 -2.0782 0.9888 6 6 2.7012 -2.6832 2.2747 7 8 2.8751 -1.9808 3.2481 8 7 2.9564 -4.0048 2.3432 9 6 3.4432 -4.5931 3.5935 10 6 3.7691 -6.0709 3.3688 11 1 4.0275 -6.5346 4.3208 12 6 4.9521 -6.1915 2.4055 13 6 5.2618 -7.6722 2.1679 14 6 4.0123 -8.3648 1.6170 15 6 2.8566 -8.1813 2.6033 16 7 2.5989 -6.7485 2.7962 17 6 1.4075 -6.5353 3.6287 18 6 0.1736 -6.8915 2.8403 19 8 0.2765 -7.2840 1.6972 20 7 -1.0444 -6.7741 3.4054 21 6 -2.1670 -7.0977 2.6881 22 1 -2.0754 -7.4472 1.6703 23 6 -3.4230 -6.9711 3.2687 24 7 -3.5345 -6.5464 4.5073 25 14 -4.9531 -7.4048 2.2888 26 1 -4.5592 -7.8541 0.9293 27 1 -5.6892 -8.4954 2.9773 28 1 -5.8271 -6.2091 2.1807 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9318 -2.2467 0.1988 37 1 1.2536 -2.5434 0.7126 38 1 2.8170 -4.5666 1.5649 39 1 2.6744 -4.5031 4.3609 40 1 4.3420 -4.0678 3.9163 41 1 4.6996 -5.7159 1.4577 42 1 5.8246 -5.7013 2.8374 43 1 6.0757 -7.7631 1.4487 44 1 5.5532 -8.1388 3.1089 45 1 3.7450 -7.9234 0.6569 46 1 4.2137 -9.4279 1.4855 47 1 3.1191 -8.6350 3.5589 48 1 1.9616 -8.6612 2.2073 49 1 1.3569 -5.4888 3.9295 50 1 1.4665 -7.1659 4.5158 51 1 -1.1267 -6.4599 4.3194 52 1 -4.4112 -6.4584 4.9128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661852103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:29 Heat of formation + Delta-G solvation = -122.806470 kcal Electronic energy + Delta-G solvation = -31289.957715 eV Core-core repulsion = 27096.244258 eV Total energy + Delta-G solvation = -4193.713458 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.12427 -39.18581 -38.00017 -37.59411 -34.66917 -34.02636 -33.12062 -32.86939 -31.26283 -31.18203 -28.29584 -27.51914 -27.28614 -25.68055 -24.57839 -22.94307 -21.48439 -21.36482 -20.69569 -19.43052 -19.11490 -17.86058 -17.21283 -17.07560 -16.39347 -15.92496 -15.72308 -15.31585 -15.18004 -14.74382 -14.57726 -14.26692 -14.22366 -13.98737 -13.89805 -13.55262 -13.34865 -13.26733 -12.91737 -12.82021 -12.71429 -12.34314 -12.22447 -12.09424 -11.99268 -11.81501 -11.55557 -11.51849 -11.45533 -11.16178 -11.06680 -10.84969 -10.70972 -10.36196 -10.30268 -10.25949 -10.18262 -9.74630 -9.65509 -9.48970 -8.90513 -8.49155 -7.98319 -7.90926 -6.41603 -3.82627 2.74040 2.88078 3.15411 3.26022 3.32372 3.80864 3.90954 4.03041 4.21854 4.59715 4.69954 4.71675 4.86122 4.92151 4.96377 5.04031 5.05190 5.08635 5.19535 5.23637 5.24670 5.28491 5.37147 5.45188 5.50064 5.57086 5.62276 5.66502 5.67303 5.70695 5.72402 5.81408 5.86126 5.95056 6.01621 6.02682 6.03589 6.12788 6.13757 6.27068 6.39228 6.44751 6.54223 7.03649 7.23063 7.33114 7.54795 7.68067 8.06125 8.36863 8.61530 9.18062 9.54897 10.06214 10.76173 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006245 B = 0.004113 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4482.393482 B = 6805.988434 C =10310.604753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 C -0.148 4.148 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.514 3.486 7 O -0.530 6.530 8 N -0.712 5.712 9 C 0.126 3.874 10 C 0.070 3.930 11 H 0.054 0.946 12 C -0.108 4.108 13 C -0.120 4.120 14 C -0.114 4.114 15 C 0.059 3.941 16 N -0.509 5.509 17 C 0.037 3.963 18 C 0.446 3.554 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.413 0.587 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.023 0.977 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.048 0.952 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.723 5.834 -5.896 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.021 3.979 3 C -0.205 4.205 4 O -0.277 6.277 5 C -0.036 4.036 6 C 0.299 3.701 7 O -0.406 6.406 8 N -0.367 5.367 9 C 0.002 3.998 10 C -0.039 4.039 11 H 0.072 0.928 12 C -0.146 4.146 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.068 4.068 16 N -0.234 5.234 17 C -0.094 4.094 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.114 0.886 49 H 0.110 0.890 50 H 0.066 0.934 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.689 6.409 -6.130 18.022 hybrid contribution -1.016 -0.841 0.458 1.396 sum 14.672 5.568 -5.672 16.687 Atomic orbital electron populations 1.22327 0.95686 1.02904 1.02662 1.22156 0.93968 0.93832 0.87895 1.21845 1.01708 0.94430 1.02554 1.88042 1.86570 1.17830 1.35219 1.22224 1.01587 0.83989 0.95838 1.20198 0.77922 0.82281 0.89689 1.90709 1.51344 1.60879 1.37637 1.45734 1.67566 1.07780 1.15667 1.21440 0.99631 0.91923 0.86778 1.21954 0.91741 0.93154 0.97091 0.92789 1.21598 0.96230 0.96868 0.99923 1.21592 0.97928 0.95505 1.00775 1.21555 0.93961 0.99829 0.99823 1.22146 0.99881 0.87520 0.97292 1.61467 1.01459 1.12439 1.48023 1.21999 0.90708 1.02222 0.94502 1.19691 0.83963 0.84938 0.88266 1.90496 1.86172 1.51121 1.18405 1.41883 1.04629 1.58335 1.15330 1.19714 0.83253 1.41098 0.98700 0.87908 1.25255 0.99269 0.97327 0.96077 1.69620 1.25244 1.46632 1.12698 0.85830 0.80972 0.78034 0.79679 1.19255 1.20786 1.20769 0.91561 0.91628 0.92078 0.92115 0.92042 0.91245 0.91629 0.90512 0.89904 0.75048 0.91329 0.90821 0.91001 0.91604 0.92039 0.92470 0.90881 0.91930 0.95865 0.88632 0.88987 0.93405 0.77580 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.53 37.16 0.35 -1.50 16 2 C 0.08 0.84 3.34 -26.73 -0.09 0.75 16 3 C -0.15 -1.34 9.56 37.16 0.36 -0.98 16 4 O -0.36 -5.08 9.52 -55.14 -0.52 -5.61 16 5 C 0.04 0.55 6.23 36.00 0.22 0.77 16 6 C 0.51 7.74 7.91 -10.99 -0.09 7.66 16 7 O -0.53 -10.07 16.50 -14.35 -0.24 -10.31 16 8 N -0.71 -9.34 5.08 -60.30 -0.31 -9.64 16 9 C 0.13 1.58 4.58 -4.04 -0.02 1.56 16 10 C 0.07 0.81 2.11 -67.73 -0.14 0.66 16 11 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.11 -1.07 5.27 -26.65 -0.14 -1.21 16 13 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 14 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 15 C 0.06 0.85 5.11 -3.83 -0.02 0.84 16 16 N -0.51 -7.43 3.44 -228.13 -0.79 -8.21 16 17 C 0.04 0.63 5.26 -4.98 -0.03 0.60 16 18 C 0.45 10.05 7.47 -10.98 -0.08 9.97 16 19 O -0.58 -14.59 14.41 5.54 0.08 -14.51 16 20 N -0.57 -14.07 5.29 -10.96 -0.06 -14.13 16 21 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 25 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 32 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 38 H 0.41 5.23 7.45 -40.82 -0.30 4.92 16 39 H 0.07 0.95 6.36 -51.93 -0.33 0.62 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.73 7.36 -51.93 -0.38 0.35 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.10 1.72 6.34 -51.93 -0.33 1.39 16 49 H 0.09 1.52 5.52 -51.93 -0.29 1.24 16 50 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 51 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 52 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 413.68 15.07 6.23 6.23 Total: -1.00 -32.75 413.68 -9.15 -41.90 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -9.02 Total: 13.72 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.23 Total: 8.50 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.42 Total: -55.80 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.68 Total: -30.43 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.75 -9.15 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661852103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.906 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds